Wall clock time and date at job start Sat Apr 11 2020 08:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.52134 * 2 1 4 4 C 1.53186 * 109.49774 * 120.07954 * 2 1 3 5 5 N 1.46925 * 108.77786 * 174.58681 * 4 2 1 6 6 C 1.34778 * 120.63547 * 126.36842 * 5 4 2 7 7 O 1.21686 * 119.99350 * 353.03456 * 6 5 4 8 8 C 1.46762 * 120.00416 * 173.03408 * 6 5 4 9 9 C 1.36689 * 126.87822 * 335.44321 * 8 6 5 10 10 N 1.33318 * 107.78750 * 179.68911 * 9 8 6 11 11 C 1.30954 * 109.75510 * 0.14665 * 10 9 8 12 12 N 1.34536 * 108.94786 * 0.34851 * 11 10 9 13 13 C 1.46478 * 126.52510 * 178.86289 * 12 11 10 14 14 C 1.53037 * 109.57772 * 28.19869 * 13 12 11 15 15 C 1.52829 * 109.60083 * 270.60906 * 14 13 12 16 16 C 1.52584 * 110.30350 * 61.24500 * 15 14 13 17 17 C 1.50941 * 125.84977 * 180.74396 * 11 10 9 18 18 C 1.46933 * 118.73881 * 306.39664 * 5 4 2 19 19 C 1.53187 * 108.77333 * 53.60190 * 18 5 4 20 20 C 1.53035 * 109.31523 * 305.36654 * 19 18 5 21 21 H 1.09001 * 109.46604 * 301.34521 * 20 19 18 22 22 N 1.46504 * 109.46119 * 181.38739 * 20 19 18 23 23 C 1.36937 * 120.00100 * 84.99908 * 22 20 19 24 24 H 1.07991 * 119.99964 * 0.02562 * 23 22 20 25 25 C 1.38817 * 119.99909 * 180.02562 * 23 22 20 26 26 N 1.31612 * 120.00093 * 0.02562 * 25 23 22 27 27 Si 1.86797 * 119.99870 * 180.02562 * 25 23 22 28 28 H 1.48505 * 109.47323 * 89.99908 * 27 25 23 29 29 H 1.48494 * 109.47265 * 210.00132 * 27 25 23 30 30 H 1.48505 * 109.47007 * 329.99866 * 27 25 23 31 31 H 1.09003 * 109.46892 * 299.91612 * 1 2 3 32 32 H 1.08992 * 109.47180 * 59.91745 * 1 2 3 33 33 H 1.08997 * 109.46766 * 179.91862 * 1 2 3 34 34 H 1.09006 * 109.59006 * 54.79839 * 4 2 1 35 35 H 1.09002 * 109.59110 * 294.37361 * 4 2 1 36 36 H 1.08003 * 126.11234 * 359.82140 * 9 8 6 37 37 H 1.08998 * 109.45120 * 148.22887 * 13 12 11 38 38 H 1.08996 * 109.45249 * 268.16599 * 13 12 11 39 39 H 1.09005 * 109.44595 * 30.64382 * 14 13 12 40 40 H 1.08995 * 109.45314 * 150.56621 * 14 13 12 41 41 H 1.08997 * 109.33175 * 181.49542 * 15 14 13 42 42 H 1.09005 * 109.33187 * 300.98723 * 15 14 13 43 43 H 1.09001 * 109.45670 * 153.43570 * 16 15 14 44 44 H 1.09001 * 109.45244 * 273.40228 * 16 15 14 45 45 H 1.08999 * 109.50547 * 106.64948 * 17 11 10 46 46 H 1.08997 * 109.50803 * 346.51640 * 17 11 10 47 47 H 1.08996 * 109.58795 * 173.39233 * 18 5 4 48 48 H 1.09001 * 109.58165 * 293.81840 * 18 5 4 49 49 H 1.09000 * 109.49930 * 65.32189 * 19 18 5 50 50 H 1.09004 * 109.49417 * 185.41508 * 19 18 5 51 51 H 0.97010 * 120.00213 * 265.00281 * 22 20 19 52 52 H 0.97000 * 120.00434 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0413 -0.7237 1.2496 5 7 3.5046 -0.8291 1.1696 6 6 4.2812 -0.3855 2.1779 7 8 3.7832 0.2210 3.1078 8 6 5.7275 -0.6341 2.1543 9 6 6.3763 -1.6399 1.4942 10 7 7.6820 -1.5036 1.7264 11 6 7.8881 -0.4673 2.5000 12 7 6.7040 0.0972 2.7988 13 6 6.4864 1.2644 3.6566 14 6 7.7205 2.1685 3.6151 15 6 8.7023 1.7463 4.7075 16 6 9.1631 0.3098 4.4788 17 6 9.2325 0.0268 2.9763 18 6 4.1054 -1.4266 -0.0308 19 6 3.5709 -0.6949 -1.2660 20 6 2.0409 -0.7231 -1.2483 21 1 1.6967 -1.7572 -1.2353 22 7 1.5265 -0.0529 -2.4453 23 6 1.3951 -0.7495 -3.6169 24 1 1.6703 -1.7930 -3.6584 25 6 0.9083 -0.1144 -4.7511 26 7 0.5734 1.1574 -4.7006 27 14 0.7283 -1.0648 -6.3491 28 1 -0.6243 -1.6746 -6.4129 29 1 0.9095 -0.1411 -7.4976 30 1 1.7568 -2.1346 -6.4073 31 1 -0.3633 0.5125 0.8908 32 1 -0.3633 0.5151 -0.8892 33 1 -0.3633 -1.0277 -0.0015 34 1 1.6053 -1.7216 1.2981 35 1 1.7638 -0.1579 2.1389 36 1 5.9140 -2.4068 0.8903 37 1 5.6179 1.8191 3.3014 38 1 6.3122 0.9348 4.6808 39 1 8.2018 2.0812 2.6410 40 1 7.4183 3.2029 3.7787 41 1 9.5672 2.4095 4.6912 42 1 8.2138 1.8182 5.6793 43 1 10.1498 0.1703 4.9204 44 1 8.4563 -0.3767 4.9449 45 1 9.4927 0.9424 2.4452 46 1 9.9889 -0.7339 2.7838 47 1 5.1896 -1.3245 0.0137 48 1 3.8376 -2.4817 -0.0868 49 1 3.9159 0.3389 -1.2541 50 1 3.9335 -1.1896 -2.1671 51 1 1.2791 0.8843 -2.4079 52 1 0.2336 1.6014 -5.4933 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036084311.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:11:21 Heat of formation + Delta-G solvation = 39.020663 kcal Electronic energy + Delta-G solvation = -31635.921443 eV Core-core repulsion = 27636.485388 eV Total energy + Delta-G solvation = -3999.436055 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.68413 -39.90099 -37.67402 -37.60527 -34.74420 -33.93187 -32.99823 -31.52870 -31.17410 -29.91842 -29.28630 -27.09386 -25.75152 -25.31772 -24.59115 -23.34018 -21.95570 -21.69981 -20.61521 -20.32736 -19.72387 -19.10127 -17.24206 -17.04654 -16.72631 -16.20979 -15.78624 -15.48916 -15.38197 -14.93877 -14.70236 -14.25531 -14.16208 -13.97662 -13.72888 -13.55899 -13.28525 -13.27493 -13.08523 -12.94754 -12.44852 -12.36737 -12.16393 -12.10236 -11.69735 -11.52416 -11.37541 -11.24991 -11.16959 -11.01336 -10.93679 -10.80375 -10.65415 -10.43705 -10.38356 -10.20126 -9.84071 -9.81891 -9.72569 -9.62405 -8.91338 -8.64926 -8.40486 -6.96890 -5.78207 -3.06805 1.25154 2.25983 2.67278 3.11112 3.25574 3.42221 3.47753 3.49169 3.96600 4.13333 4.21372 4.30660 4.47517 4.57387 4.65505 4.79357 4.85322 4.92806 5.05915 5.09027 5.18039 5.23389 5.25237 5.28798 5.35039 5.39012 5.41255 5.52030 5.52282 5.57333 5.62891 5.67784 5.68690 5.75373 5.81267 5.93428 5.98872 6.06426 6.14704 6.31271 6.34581 6.38955 6.42906 6.51947 6.62438 6.80950 6.89138 6.90890 7.05080 7.41884 7.68340 7.77664 8.12586 8.39995 9.51482 10.08872 10.43661 11.44337 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017374 B = 0.002514 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.176469 B =11133.086762 C =11747.553909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.109 4.109 3 H 0.069 0.931 4 C 0.123 3.877 5 N -0.590 5.590 6 C 0.593 3.407 7 O -0.554 6.554 8 C -0.080 4.080 9 C 0.029 3.971 10 N -0.493 5.493 11 C 0.228 3.772 12 N -0.417 5.417 13 C 0.105 3.895 14 C -0.142 4.142 15 C -0.124 4.124 16 C -0.124 4.124 17 C -0.038 4.038 18 C 0.084 3.916 19 C -0.150 4.150 20 C 0.184 3.816 21 H 0.049 0.951 22 N -0.720 5.720 23 C -0.237 4.237 24 H 0.070 0.930 25 C -0.013 4.013 26 N -0.933 5.933 27 Si 0.905 3.095 28 H -0.290 1.290 29 H -0.292 1.292 30 H -0.282 1.282 31 H 0.043 0.957 32 H 0.074 0.926 33 H 0.051 0.949 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.188 0.812 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.079 0.921 44 H 0.066 0.934 45 H 0.091 0.909 46 H 0.099 0.901 47 H 0.097 0.903 48 H 0.071 0.929 49 H 0.058 0.942 50 H 0.078 0.922 51 H 0.384 0.616 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.808 -0.784 20.122 25.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.129 4.129 3 H 0.087 0.913 4 C 0.001 3.999 5 N -0.321 5.321 6 C 0.381 3.619 7 O -0.434 6.434 8 C -0.197 4.197 9 C -0.124 4.124 10 N -0.212 5.212 11 C -0.034 4.034 12 N -0.098 5.098 13 C -0.017 4.017 14 C -0.180 4.180 15 C -0.162 4.162 16 C -0.163 4.163 17 C -0.077 4.077 18 C -0.038 4.038 19 C -0.191 4.191 20 C 0.073 3.927 21 H 0.067 0.933 22 N -0.361 5.361 23 C -0.368 4.368 24 H 0.088 0.912 25 C -0.209 4.209 26 N -0.581 5.581 27 Si 0.736 3.264 28 H -0.218 1.218 29 H -0.219 1.219 30 H -0.208 1.208 31 H 0.062 0.938 32 H 0.093 0.907 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.107 0.893 36 H 0.205 0.795 37 H 0.118 0.882 38 H 0.107 0.893 39 H 0.100 0.900 40 H 0.106 0.894 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.098 0.902 44 H 0.084 0.916 45 H 0.109 0.891 46 H 0.117 0.883 47 H 0.114 0.886 48 H 0.090 0.910 49 H 0.077 0.923 50 H 0.096 0.904 51 H 0.217 0.783 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 16.083 -0.931 20.248 25.875 hybrid contribution -0.932 0.294 -0.812 1.271 sum 15.152 -0.636 19.436 24.652 Atomic orbital electron populations 1.21657 0.94015 1.01821 1.01861 1.21742 0.96608 1.00045 0.94552 0.91278 1.21768 0.77517 1.01038 0.99594 1.47801 1.07065 1.59966 1.17296 1.16787 0.83918 0.78816 0.82396 1.90774 1.75084 1.41936 1.35565 1.20729 0.90912 1.00781 1.07266 1.22972 0.89397 0.99222 1.00842 1.70130 1.17383 1.16955 1.16696 1.23405 0.88451 0.92767 0.98785 1.45228 1.05923 1.23337 1.35342 1.22073 1.00036 0.84770 0.94797 1.22063 0.95219 0.99709 1.01007 1.21623 0.99261 0.96542 0.98740 1.21611 1.02622 0.97001 0.95027 1.20263 0.89375 1.02229 0.95827 1.22533 0.99364 0.97442 0.84479 1.22675 1.00250 1.00394 0.95809 1.20209 0.90394 0.95709 0.86378 0.93314 1.42410 1.76494 1.11373 1.05792 1.19216 1.35841 0.94068 0.87700 0.91196 1.24729 1.02120 0.96006 0.98061 1.69655 1.50085 1.09447 1.28909 0.86223 0.77787 0.78694 0.83682 1.21775 1.21867 1.20768 0.93835 0.90706 0.92986 0.91216 0.89266 0.79535 0.88235 0.89317 0.90045 0.89381 0.90939 0.91234 0.90238 0.91567 0.89104 0.88262 0.88551 0.91029 0.92323 0.90379 0.78251 0.93539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.02 37.16 0.34 -1.84 16 2 C -0.11 -1.79 2.46 -90.50 -0.22 -2.01 16 3 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 4 C 0.12 1.77 5.73 -3.71 -0.02 1.75 16 5 N -0.59 -8.51 2.97 -174.28 -0.52 -9.03 16 6 C 0.59 9.08 7.52 -12.82 -0.10 8.99 16 7 O -0.55 -9.60 14.99 5.20 0.08 -9.52 16 8 C -0.08 -1.11 6.46 -82.21 -0.53 -1.65 16 9 C 0.03 0.39 9.52 -17.47 -0.17 0.22 16 10 N -0.49 -6.69 11.20 -10.47 -0.12 -6.80 16 11 C 0.23 2.62 6.83 -155.38 -1.06 1.56 16 12 N -0.42 -5.06 3.10 -109.85 -0.34 -5.40 16 13 C 0.10 1.02 5.74 -4.03 -0.02 1.00 16 14 C -0.14 -0.94 5.56 -26.80 -0.15 -1.09 16 15 C -0.12 -0.62 5.68 -27.03 -0.15 -0.78 16 16 C -0.12 -0.72 5.67 -26.92 -0.15 -0.87 16 17 C -0.04 -0.28 5.54 -27.74 -0.15 -0.44 16 18 C 0.08 1.14 5.16 -3.71 -0.02 1.12 16 19 C -0.15 -2.54 5.66 -26.62 -0.15 -2.69 16 20 C 0.18 3.43 2.19 -67.89 -0.15 3.28 16 21 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 22 N -0.72 -17.19 4.41 -53.39 -0.24 -17.43 16 23 C -0.24 -6.32 9.93 -15.06 -0.15 -6.47 16 24 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 25 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 26 N -0.93 -27.67 13.06 55.49 0.72 -26.95 16 27 Si 0.90 22.04 29.55 -169.99 -5.02 17.02 16 28 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 29 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 30 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.07 1.42 7.37 -51.93 -0.38 1.03 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.09 1.32 7.00 -51.93 -0.36 0.96 16 36 H 0.19 2.10 6.03 -52.48 -0.32 1.78 16 37 H 0.10 1.13 7.22 -51.93 -0.38 0.75 16 38 H 0.09 0.82 7.82 -51.93 -0.41 0.42 16 39 H 0.08 0.59 5.69 -51.93 -0.30 0.29 16 40 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 43 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.07 0.49 7.84 -51.93 -0.41 0.08 16 45 H 0.09 0.57 6.30 -51.93 -0.33 0.24 16 46 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.10 1.22 3.98 -51.93 -0.21 1.02 16 48 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 49 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 50 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 51 H 0.38 9.92 7.51 -40.82 -0.31 9.61 16 52 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 393.38 15.07 5.93 5.93 Total: -1.00 -32.44 393.38 -10.88 -43.32 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -8.42 Total: 9.23 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -2.96 Total: -0.38 kcal Atomic # 7 Polarization: -65.12 SS G_CDS: -0.49 Total: -65.61 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.08 Total: -9.52 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.44 -10.88 -43.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036084311.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.344 kcal (2) G-P(sol) polarization free energy of solvation -32.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds