Wall clock time and date at job start Sat Apr 11 2020 08:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.52134 * 2 1 4 4 C 1.53186 * 109.49774 * 120.07954 * 2 1 3 5 5 N 1.46925 * 108.77786 * 174.58681 * 4 2 1 6 6 C 1.34778 * 120.63547 * 126.36842 * 5 4 2 7 7 O 1.21686 * 119.99350 * 353.03456 * 6 5 4 8 8 C 1.46762 * 120.00416 * 173.03408 * 6 5 4 9 9 C 1.36689 * 126.87822 * 335.44321 * 8 6 5 10 10 N 1.33318 * 107.78750 * 179.68911 * 9 8 6 11 11 C 1.30954 * 109.75510 * 0.14665 * 10 9 8 12 12 N 1.34536 * 108.94786 * 0.34851 * 11 10 9 13 13 C 1.46478 * 126.52510 * 178.86289 * 12 11 10 14 14 C 1.53037 * 109.57772 * 28.19869 * 13 12 11 15 15 C 1.52829 * 109.60083 * 270.60906 * 14 13 12 16 16 C 1.52584 * 110.30350 * 61.24500 * 15 14 13 17 17 C 1.50941 * 125.84977 * 180.74396 * 11 10 9 18 18 C 1.46933 * 118.73881 * 306.39664 * 5 4 2 19 19 C 1.53187 * 108.77333 * 53.60190 * 18 5 4 20 20 C 1.53035 * 109.31523 * 305.36654 * 19 18 5 21 21 H 1.09001 * 109.46604 * 301.34521 * 20 19 18 22 22 N 1.46504 * 109.46119 * 181.38739 * 20 19 18 23 23 C 1.36937 * 120.00100 * 84.99908 * 22 20 19 24 24 H 1.07991 * 119.99964 * 0.02562 * 23 22 20 25 25 C 1.38817 * 119.99909 * 180.02562 * 23 22 20 26 26 N 1.31612 * 120.00093 * 0.02562 * 25 23 22 27 27 Si 1.86797 * 119.99870 * 180.02562 * 25 23 22 28 28 H 1.48505 * 109.47323 * 89.99908 * 27 25 23 29 29 H 1.48494 * 109.47265 * 210.00132 * 27 25 23 30 30 H 1.48505 * 109.47007 * 329.99866 * 27 25 23 31 31 H 1.09003 * 109.46892 * 299.91612 * 1 2 3 32 32 H 1.08992 * 109.47180 * 59.91745 * 1 2 3 33 33 H 1.08997 * 109.46766 * 179.91862 * 1 2 3 34 34 H 1.09006 * 109.59006 * 54.79839 * 4 2 1 35 35 H 1.09002 * 109.59110 * 294.37361 * 4 2 1 36 36 H 1.08003 * 126.11234 * 359.82140 * 9 8 6 37 37 H 1.08998 * 109.45120 * 148.22887 * 13 12 11 38 38 H 1.08996 * 109.45249 * 268.16599 * 13 12 11 39 39 H 1.09005 * 109.44595 * 30.64382 * 14 13 12 40 40 H 1.08995 * 109.45314 * 150.56621 * 14 13 12 41 41 H 1.08997 * 109.33175 * 181.49542 * 15 14 13 42 42 H 1.09005 * 109.33187 * 300.98723 * 15 14 13 43 43 H 1.09001 * 109.45670 * 153.43570 * 16 15 14 44 44 H 1.09001 * 109.45244 * 273.40228 * 16 15 14 45 45 H 1.08999 * 109.50547 * 106.64948 * 17 11 10 46 46 H 1.08997 * 109.50803 * 346.51640 * 17 11 10 47 47 H 1.08996 * 109.58795 * 173.39233 * 18 5 4 48 48 H 1.09001 * 109.58165 * 293.81840 * 18 5 4 49 49 H 1.09000 * 109.49930 * 65.32189 * 19 18 5 50 50 H 1.09004 * 109.49417 * 185.41508 * 19 18 5 51 51 H 0.97010 * 120.00213 * 265.00281 * 22 20 19 52 52 H 0.97000 * 120.00434 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0413 -0.7237 1.2496 5 7 3.5046 -0.8291 1.1696 6 6 4.2812 -0.3855 2.1779 7 8 3.7832 0.2210 3.1078 8 6 5.7275 -0.6341 2.1543 9 6 6.3763 -1.6399 1.4942 10 7 7.6820 -1.5036 1.7264 11 6 7.8881 -0.4673 2.5000 12 7 6.7040 0.0972 2.7988 13 6 6.4864 1.2644 3.6566 14 6 7.7205 2.1685 3.6151 15 6 8.7023 1.7463 4.7075 16 6 9.1631 0.3098 4.4788 17 6 9.2325 0.0268 2.9763 18 6 4.1054 -1.4266 -0.0308 19 6 3.5709 -0.6949 -1.2660 20 6 2.0409 -0.7231 -1.2483 21 1 1.6967 -1.7572 -1.2353 22 7 1.5265 -0.0529 -2.4453 23 6 1.3951 -0.7495 -3.6169 24 1 1.6703 -1.7930 -3.6584 25 6 0.9083 -0.1144 -4.7511 26 7 0.5734 1.1574 -4.7006 27 14 0.7283 -1.0648 -6.3491 28 1 -0.6243 -1.6746 -6.4129 29 1 0.9095 -0.1411 -7.4976 30 1 1.7568 -2.1346 -6.4073 31 1 -0.3633 0.5125 0.8908 32 1 -0.3633 0.5151 -0.8892 33 1 -0.3633 -1.0277 -0.0015 34 1 1.6053 -1.7216 1.2981 35 1 1.7638 -0.1579 2.1389 36 1 5.9140 -2.4068 0.8903 37 1 5.6179 1.8191 3.3014 38 1 6.3122 0.9348 4.6808 39 1 8.2018 2.0812 2.6410 40 1 7.4183 3.2029 3.7787 41 1 9.5672 2.4095 4.6912 42 1 8.2138 1.8182 5.6793 43 1 10.1498 0.1703 4.9204 44 1 8.4563 -0.3767 4.9449 45 1 9.4927 0.9424 2.4452 46 1 9.9889 -0.7339 2.7838 47 1 5.1896 -1.3245 0.0137 48 1 3.8376 -2.4817 -0.0868 49 1 3.9159 0.3389 -1.2541 50 1 3.9335 -1.1896 -2.1671 51 1 1.2791 0.8843 -2.4079 52 1 0.2336 1.6014 -5.4933 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036084311.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:11:20 Heat of formation + Delta-G solvation = 19.990702 kcal Electronic energy + Delta-G solvation = -31636.746644 eV Core-core repulsion = 27636.485388 eV Total energy + Delta-G solvation = -4000.261256 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -43.61037 -41.11747 -38.98442 -38.30498 -36.26898 -34.74049 -34.58717 -33.12067 -31.95341 -31.16657 -30.65591 -28.03996 -26.96625 -26.57058 -25.47534 -24.83643 -23.20981 -23.03625 -21.63596 -20.99426 -20.86090 -20.19114 -19.06667 -18.26444 -17.72645 -17.16380 -16.85120 -16.66184 -16.40073 -16.03539 -15.70963 -15.63091 -15.46839 -15.10440 -15.00578 -14.81843 -14.63063 -14.31494 -14.03320 -13.85487 -13.73927 -13.56254 -13.10260 -13.00864 -12.89170 -12.84678 -12.71947 -12.62698 -12.47366 -12.14324 -12.08460 -11.92142 -11.84359 -11.75719 -11.67690 -11.51387 -11.36826 -11.16591 -10.98144 -10.84164 -10.73657 -9.81033 -9.45833 -8.95608 -7.90765 -5.18280 0.23613 1.30697 1.49140 1.49801 1.57950 1.69883 2.05147 2.16026 2.58432 3.22475 3.32250 3.42947 3.55119 3.64342 3.77389 3.78264 3.83661 3.98638 4.01433 4.08787 4.16316 4.20592 4.24164 4.29112 4.29866 4.36161 4.47082 4.56060 4.66012 4.73737 4.75389 4.77586 4.80004 4.81232 4.86899 4.95278 4.98234 5.02254 5.08243 5.16525 5.18868 5.27541 5.29935 5.35179 5.39322 5.43429 5.49067 5.56302 5.61081 6.03700 6.23565 6.30778 6.80082 6.97479 7.37158 8.13025 8.36208 9.32935 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017374 B = 0.002514 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.176469 B =11133.086762 C =11747.553909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.099 4.099 3 H 0.049 0.951 4 C 0.130 3.870 5 N -0.591 5.591 6 C 0.593 3.407 7 O -0.580 6.580 8 C -0.109 4.109 9 C 0.032 3.968 10 N -0.521 5.521 11 C 0.235 3.765 12 N -0.422 5.422 13 C 0.102 3.898 14 C -0.136 4.136 15 C -0.119 4.119 16 C -0.119 4.119 17 C -0.039 4.039 18 C 0.096 3.904 19 C -0.140 4.140 20 C 0.180 3.820 21 H 0.054 0.946 22 N -0.732 5.732 23 C -0.228 4.228 24 H 0.079 0.921 25 C -0.078 4.078 26 N -0.972 5.972 27 Si 0.967 3.033 28 H -0.289 1.289 29 H -0.301 1.301 30 H -0.268 1.268 31 H 0.064 0.936 32 H 0.040 0.960 33 H 0.061 0.939 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.203 0.797 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.101 0.899 41 H 0.094 0.906 42 H 0.074 0.926 43 H 0.103 0.897 44 H 0.047 0.953 45 H 0.107 0.893 46 H 0.107 0.893 47 H 0.108 0.892 48 H 0.099 0.901 49 H 0.037 0.963 50 H 0.069 0.931 51 H 0.370 0.630 52 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.816 -2.037 21.549 28.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.119 4.119 3 H 0.067 0.933 4 C 0.008 3.992 5 N -0.321 5.321 6 C 0.382 3.618 7 O -0.462 6.462 8 C -0.226 4.226 9 C -0.122 4.122 10 N -0.240 5.240 11 C -0.027 4.027 12 N -0.102 5.102 13 C -0.019 4.019 14 C -0.173 4.173 15 C -0.156 4.156 16 C -0.157 4.157 17 C -0.078 4.078 18 C -0.027 4.027 19 C -0.181 4.181 20 C 0.071 3.929 21 H 0.072 0.928 22 N -0.370 5.370 23 C -0.360 4.360 24 H 0.097 0.903 25 C -0.270 4.270 26 N -0.623 5.623 27 Si 0.797 3.203 28 H -0.217 1.217 29 H -0.228 1.228 30 H -0.193 1.193 31 H 0.083 0.917 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.110 0.890 35 H 0.106 0.894 36 H 0.220 0.780 37 H 0.096 0.904 38 H 0.108 0.892 39 H 0.095 0.905 40 H 0.120 0.880 41 H 0.112 0.888 42 H 0.093 0.907 43 H 0.121 0.879 44 H 0.066 0.934 45 H 0.125 0.875 46 H 0.125 0.875 47 H 0.125 0.875 48 H 0.117 0.883 49 H 0.056 0.944 50 H 0.088 0.912 51 H 0.201 0.799 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 18.115 -2.224 21.711 28.363 hybrid contribution -1.503 0.682 -1.168 2.022 sum 16.613 -1.541 20.544 26.465 Atomic orbital electron populations 1.21569 0.93644 1.02239 1.01237 1.21601 0.96852 0.98921 0.94554 0.93272 1.21699 0.77684 1.01853 0.97983 1.47825 1.07043 1.59845 1.17387 1.16980 0.84550 0.78170 0.82098 1.90751 1.75668 1.43139 1.36606 1.20667 0.90578 1.02151 1.09164 1.23267 0.89472 0.99088 1.00346 1.70166 1.17485 1.18287 1.18065 1.24228 0.89588 0.91720 0.97160 1.45445 1.05775 1.23682 1.35313 1.22210 1.00982 0.84443 0.94245 1.22075 0.94088 0.99645 1.01528 1.21619 0.99518 0.96354 0.98155 1.21602 1.03478 0.97040 0.93612 1.20513 0.87181 1.03034 0.97063 1.22517 0.99789 0.98094 0.82264 1.22470 0.98640 0.99624 0.97388 1.20441 0.91386 0.95602 0.85466 0.92796 1.42599 1.76819 1.10817 1.06788 1.19608 1.33550 0.94415 0.88440 0.90293 1.25495 1.03294 0.96903 1.01323 1.69818 1.52190 1.11097 1.29239 0.85217 0.77872 0.77497 0.79674 1.21672 1.22826 1.19253 0.91654 0.94100 0.91975 0.88958 0.89450 0.78025 0.90419 0.89156 0.90467 0.88024 0.88778 0.90723 0.87892 0.93392 0.87523 0.87452 0.87452 0.88328 0.94413 0.91246 0.79878 0.94321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.11 9.02 71.98 0.65 -3.46 16 2 C -0.10 -3.23 2.46 -10.72 -0.03 -3.26 16 3 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 4 C 0.13 3.58 5.73 86.36 0.49 4.07 16 5 N -0.59 -16.41 2.97 -823.51 -2.45 -18.86 16 6 C 0.59 17.95 7.52 86.47 0.65 18.60 16 7 O -0.58 -20.19 14.99 -4.30 -0.06 -20.25 16 8 C -0.11 -2.98 6.46 40.04 0.26 -2.72 16 9 C 0.03 0.82 9.52 84.10 0.80 1.62 16 10 N -0.52 -13.50 11.20 -187.04 -2.10 -15.60 16 11 C 0.24 5.11 6.83 138.23 0.94 6.05 16 12 N -0.42 -9.96 3.10 -501.45 -1.55 -11.51 16 13 C 0.10 1.95 5.74 86.40 0.50 2.45 16 14 C -0.14 -1.54 5.56 30.55 0.17 -1.37 16 15 C -0.12 -0.85 5.68 30.40 0.17 -0.67 16 16 C -0.12 -1.06 5.67 30.47 0.17 -0.89 16 17 C -0.04 -0.49 5.54 29.94 0.17 -0.33 16 18 C 0.10 2.42 5.16 86.36 0.45 2.86 16 19 C -0.14 -4.69 5.66 30.67 0.17 -4.51 16 20 C 0.18 6.67 2.19 45.01 0.10 6.77 16 21 H 0.05 1.97 8.08 -2.39 -0.02 1.95 16 22 N -0.73 -35.53 4.41 -322.82 -1.42 -36.95 16 23 C -0.23 -12.20 9.93 84.03 0.83 -11.36 16 24 H 0.08 4.01 7.83 -2.91 -0.02 3.98 16 25 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 26 N -0.97 -59.33 13.06 21.65 0.28 -59.05 16 27 Si 0.97 45.71 29.55 68.60 2.03 47.74 16 28 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 29 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 30 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 31 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.04 1.58 7.37 -2.39 -0.02 1.56 16 33 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 35 H 0.09 2.50 7.00 -2.39 -0.02 2.48 16 36 H 0.20 4.16 6.03 -2.91 -0.02 4.14 16 37 H 0.08 1.81 7.22 -2.39 -0.02 1.79 16 38 H 0.09 1.65 7.82 -2.39 -0.02 1.63 16 39 H 0.08 0.96 5.69 -2.38 -0.01 0.95 16 40 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 42 H 0.07 0.50 8.09 -2.38 -0.02 0.48 16 43 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 44 H 0.05 0.62 7.84 -2.39 -0.02 0.60 16 45 H 0.11 1.04 6.30 -2.39 -0.02 1.03 16 46 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.11 2.56 3.98 -2.39 -0.01 2.55 16 48 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 49 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 50 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 51 H 0.37 19.87 7.51 -92.70 -0.70 19.17 16 52 H 0.25 14.81 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -71.84 393.38 1.93 -69.91 By element: Atomic # 1 Polarization: 34.48 SS G_CDS: 0.23 Total: 34.71 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: 6.97 Total: 9.86 kcal Atomic # 7 Polarization: -134.73 SS G_CDS: -7.24 Total: -141.97 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: -0.06 Total: -20.25 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -71.84 1.93 -69.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036084311.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.899 kcal (2) G-P(sol) polarization free energy of solvation -71.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds