Wall clock time and date at job start Sat Apr 11 2020 08:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.52688 * 2 1 4 4 C 1.53626 * 109.42855 * 120.20837 * 2 1 3 5 5 N 1.46931 * 108.54209 * 174.72471 * 4 2 1 6 6 C 1.34774 * 120.63037 * 126.36576 * 5 4 2 7 7 O 1.21686 * 119.99983 * 358.64757 * 6 5 4 8 8 C 1.46768 * 119.99824 * 178.64905 * 6 5 4 9 9 C 1.36690 * 126.88043 * 331.76006 * 8 6 5 10 10 N 1.33312 * 107.78695 * 179.80857 * 9 8 6 11 11 C 1.30960 * 109.75203 * 359.81438 * 10 9 8 12 12 N 1.34519 * 108.95562 * 0.53476 * 11 10 9 13 13 C 1.46487 * 126.52882 * 178.88140 * 12 11 10 14 14 C 1.53032 * 109.55703 * 28.21539 * 13 12 11 15 15 C 1.52827 * 109.63012 * 270.61095 * 14 13 12 16 16 C 1.52587 * 110.30084 * 61.25196 * 15 14 13 17 17 C 1.50938 * 125.82738 * 181.00133 * 11 10 9 18 18 C 1.46923 * 118.73743 * 306.09237 * 5 4 2 19 19 C 1.53200 * 108.77677 * 53.86051 * 18 5 4 20 20 C 1.53036 * 109.49561 * 239.91609 * 2 1 3 21 21 H 1.08998 * 109.45329 * 58.67414 * 20 2 1 22 22 N 1.46500 * 109.46310 * 298.70416 * 20 2 1 23 23 C 1.36941 * 120.00126 * 154.93343 * 22 20 2 24 24 H 1.07995 * 119.99675 * 0.02562 * 23 22 20 25 25 C 1.38804 * 119.99973 * 179.97438 * 23 22 20 26 26 N 1.31619 * 120.00275 * 0.02562 * 25 23 22 27 27 Si 1.86807 * 120.00016 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.46957 * 60.00311 * 27 25 23 29 29 H 1.48499 * 109.47185 * 180.02562 * 27 25 23 30 30 H 1.48500 * 109.46837 * 300.00073 * 27 25 23 31 31 H 1.09007 * 109.47515 * 180.08353 * 1 2 3 32 32 H 1.09002 * 109.47468 * 300.08421 * 1 2 3 33 33 H 1.08996 * 109.47304 * 60.08063 * 1 2 3 34 34 H 1.08997 * 109.74551 * 54.98736 * 4 2 1 35 35 H 1.09002 * 109.66641 * 294.41500 * 4 2 1 36 36 H 1.07998 * 126.10273 * 359.77091 * 9 8 6 37 37 H 1.08996 * 109.45232 * 148.24121 * 13 12 11 38 38 H 1.08998 * 109.45364 * 268.18636 * 13 12 11 39 39 H 1.08997 * 109.44639 * 150.56258 * 14 13 12 40 40 H 1.09001 * 109.41882 * 30.63377 * 14 13 12 41 41 H 1.09004 * 109.33424 * 300.99822 * 15 14 13 42 42 H 1.08998 * 109.19962 * 181.42234 * 15 14 13 43 43 H 1.09007 * 109.45408 * 273.38117 * 16 15 14 44 44 H 1.09000 * 109.45882 * 153.43896 * 16 15 14 45 45 H 1.09007 * 109.50660 * 346.47040 * 17 11 10 46 46 H 1.08994 * 109.50684 * 106.59781 * 17 11 10 47 47 H 1.08997 * 109.58582 * 173.64728 * 18 5 4 48 48 H 1.09000 * 109.58564 * 294.07504 * 18 5 4 49 49 H 1.09002 * 109.49713 * 65.31609 * 19 18 5 50 50 H 1.09001 * 109.49412 * 185.38200 * 19 18 5 51 51 H 0.96998 * 120.00026 * 334.93322 * 22 20 2 52 52 H 0.97002 * 120.00014 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0410 -0.7289 1.2520 5 7 3.5046 -0.8292 1.1696 6 6 4.2810 -0.3865 2.1784 7 8 3.7723 0.1243 3.1587 8 6 5.7402 -0.5204 2.0944 9 6 6.4382 -1.4756 1.4097 10 7 7.7376 -1.2370 1.5885 11 6 7.8933 -0.1801 2.3461 12 7 6.6821 0.2923 2.6914 13 6 6.4090 1.4474 3.5500 14 6 7.5648 2.4453 3.4491 15 6 8.6229 2.1134 4.5007 16 6 9.1862 0.7155 4.2622 17 6 9.2134 0.4234 2.7601 18 6 4.1052 -1.4268 -0.0306 19 6 3.5708 -0.6951 -1.2660 20 6 2.0407 -0.7231 -1.2483 21 1 1.6582 -0.2244 -2.1388 22 7 1.5783 -2.1131 -1.2307 23 6 1.4467 -2.8059 -2.4046 24 1 1.6844 -2.3276 -3.3433 25 6 1.0091 -4.1230 -2.3879 26 7 0.7200 -4.7060 -1.2438 27 14 0.8290 -5.0678 -3.9893 28 1 2.1447 -5.1357 -4.6746 29 1 0.3488 -6.4432 -3.7013 30 1 -0.1503 -4.3754 -4.8651 31 1 -0.3634 -1.0277 0.0015 32 1 -0.3634 0.5151 0.8892 33 1 -0.3634 0.5126 -0.8907 34 1 1.6084 -1.7283 1.2986 35 1 1.7629 -0.1663 2.1432 36 1 6.0130 -2.2802 0.8282 37 1 5.4851 1.9281 3.2287 38 1 6.3050 1.1153 4.5830 39 1 7.1889 3.4543 3.6185 40 1 8.0095 2.3856 2.4557 41 1 8.1722 2.1564 5.4923 42 1 9.4304 2.8430 4.4395 43 1 8.5569 -0.0199 4.7637 44 1 10.1988 0.6590 4.6615 45 1 10.0189 -0.2772 2.5401 46 1 9.3773 1.3511 2.2118 47 1 5.1895 -1.3247 0.0139 48 1 3.8374 -2.4819 -0.0866 49 1 3.9159 0.3388 -1.2541 50 1 3.9339 -1.1895 -2.1670 51 1 1.3652 -2.5427 -0.3876 52 1 0.4138 -5.6263 -1.2322 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036084318.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:11:28 Heat of formation + Delta-G solvation = 43.800780 kcal Electronic energy + Delta-G solvation = -32103.396717 eV Core-core repulsion = 28104.167943 eV Total energy + Delta-G solvation = -3999.228774 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.58221 -39.81160 -37.65545 -37.56521 -34.42455 -33.84169 -32.93198 -31.44707 -31.10058 -29.77576 -29.17655 -27.00599 -25.66347 -25.33844 -24.49721 -23.57730 -22.25693 -21.64768 -20.51527 -20.27076 -19.43506 -18.38440 -17.36394 -16.97741 -16.62397 -16.08065 -15.68059 -15.38571 -15.32689 -14.80834 -14.49928 -14.30616 -14.16608 -14.04620 -13.55850 -13.49845 -13.29948 -13.18206 -13.01991 -12.84868 -12.52437 -12.30315 -12.07992 -12.01962 -11.56506 -11.38318 -11.30868 -11.22115 -11.11506 -10.97079 -10.88161 -10.78247 -10.51561 -10.46683 -10.23619 -10.20222 -9.84725 -9.70813 -9.65982 -9.54785 -8.91957 -8.47572 -8.19758 -6.97301 -5.78356 -3.06918 1.38683 2.36349 2.79063 3.27495 3.38786 3.43074 3.48326 3.48905 4.04645 4.18377 4.25451 4.36574 4.58187 4.60356 4.70866 4.84080 4.90414 5.03096 5.15175 5.19578 5.24927 5.30946 5.32782 5.36038 5.41450 5.46969 5.56778 5.57204 5.61529 5.62421 5.72205 5.73061 5.81880 5.86096 5.90870 6.02923 6.08338 6.10571 6.23081 6.33244 6.41154 6.47864 6.49625 6.63168 6.69442 6.76066 6.92885 6.98817 6.99537 7.63187 7.68993 7.89241 8.29318 8.40125 9.51737 10.07988 10.43170 11.43937 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017894 B = 0.002821 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.361754 B = 9923.476306 C =10845.039337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.107 4.107 3 H 0.065 0.935 4 C 0.122 3.878 5 N -0.583 5.583 6 C 0.590 3.410 7 O -0.559 6.559 8 C -0.077 4.077 9 C 0.029 3.971 10 N -0.493 5.493 11 C 0.224 3.776 12 N -0.419 5.419 13 C 0.106 3.894 14 C -0.142 4.142 15 C -0.124 4.124 16 C -0.125 4.125 17 C -0.037 4.037 18 C 0.087 3.913 19 C -0.148 4.148 20 C 0.178 3.822 21 H 0.051 0.949 22 N -0.718 5.718 23 C -0.238 4.238 24 H 0.069 0.931 25 C -0.011 4.011 26 N -0.932 5.932 27 Si 0.904 3.096 28 H -0.286 1.286 29 H -0.292 1.292 30 H -0.287 1.287 31 H 0.071 0.929 32 H 0.043 0.957 33 H 0.053 0.947 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.191 0.809 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.079 0.921 45 H 0.098 0.902 46 H 0.089 0.911 47 H 0.093 0.907 48 H 0.089 0.911 49 H 0.046 0.954 50 H 0.075 0.925 51 H 0.384 0.616 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.073 15.321 10.370 23.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.127 4.127 3 H 0.083 0.917 4 C 0.000 4.000 5 N -0.313 5.313 6 C 0.377 3.623 7 O -0.439 6.439 8 C -0.194 4.194 9 C -0.124 4.124 10 N -0.211 5.211 11 C -0.038 4.038 12 N -0.100 5.100 13 C -0.016 4.016 14 C -0.179 4.179 15 C -0.161 4.161 16 C -0.163 4.163 17 C -0.076 4.076 18 C -0.034 4.034 19 C -0.189 4.189 20 C 0.068 3.932 21 H 0.069 0.931 22 N -0.361 5.361 23 C -0.369 4.369 24 H 0.087 0.913 25 C -0.207 4.207 26 N -0.581 5.581 27 Si 0.736 3.264 28 H -0.213 1.213 29 H -0.218 1.218 30 H -0.214 1.214 31 H 0.090 0.910 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.208 0.792 37 H 0.115 0.885 38 H 0.107 0.893 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.097 0.903 45 H 0.117 0.883 46 H 0.108 0.892 47 H 0.111 0.889 48 H 0.107 0.893 49 H 0.065 0.935 50 H 0.094 0.906 51 H 0.219 0.781 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 15.351 15.195 10.484 24.009 hybrid contribution -0.967 -0.436 -0.423 1.143 sum 14.384 14.758 10.061 22.933 Atomic orbital electron populations 1.21667 0.94154 1.03253 1.00431 1.21777 0.96508 0.98744 0.95688 0.91688 1.21800 0.77684 1.01811 0.98730 1.47800 1.07020 1.59087 1.17424 1.16786 0.83992 0.78533 0.82959 1.90763 1.75095 1.46306 1.31767 1.20759 0.91197 0.99892 1.07503 1.23044 0.88788 1.00019 1.00584 1.70136 1.18854 1.14427 1.17696 1.23380 0.87573 0.93987 0.98848 1.45194 1.05679 1.23070 1.36070 1.22035 1.00057 0.84656 0.94831 1.22058 0.95643 0.99020 1.01202 1.21622 0.98417 0.97064 0.99023 1.21614 1.02315 0.97271 0.95119 1.20239 0.90111 1.01003 0.96199 1.22479 0.98453 0.99037 0.83467 1.22512 1.00310 0.98578 0.97500 1.20220 0.90857 0.87384 0.94754 0.93144 1.42463 1.79001 1.07675 1.06924 1.19162 1.37329 0.93871 0.86537 0.91320 1.24696 1.02258 0.97170 0.96577 1.69634 1.51628 1.13114 1.23691 0.86317 0.77766 0.79209 0.83158 1.21317 1.21821 1.21417 0.90958 0.93793 0.92772 0.90269 0.89697 0.79231 0.88479 0.89346 0.89510 0.90092 0.91229 0.91006 0.91504 0.90282 0.88311 0.89243 0.88895 0.89294 0.93497 0.90599 0.78108 0.93465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.05 37.16 0.34 -1.84 16 2 C -0.11 -1.75 2.69 -90.28 -0.24 -1.99 16 3 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 4 C 0.12 2.06 5.45 -3.48 -0.02 2.04 16 5 N -0.58 -9.68 2.97 -174.00 -0.52 -10.20 16 6 C 0.59 10.00 7.49 -12.81 -0.10 9.91 16 7 O -0.56 -10.49 15.17 5.20 0.08 -10.41 16 8 C -0.08 -1.18 6.47 -82.21 -0.53 -1.71 16 9 C 0.03 0.44 9.53 -17.47 -0.17 0.27 16 10 N -0.49 -7.34 11.20 -10.48 -0.12 -7.46 16 11 C 0.22 2.78 6.83 -155.39 -1.06 1.72 16 12 N -0.42 -5.43 3.10 -109.84 -0.34 -5.77 16 13 C 0.11 1.08 5.76 -4.03 -0.02 1.06 16 14 C -0.14 -0.95 5.55 -26.80 -0.15 -1.10 16 15 C -0.12 -0.66 5.68 -27.03 -0.15 -0.82 16 16 C -0.12 -0.80 5.67 -26.92 -0.15 -0.96 16 17 C -0.04 -0.30 5.54 -27.74 -0.15 -0.45 16 18 C 0.09 1.43 5.13 -3.71 -0.02 1.41 16 19 C -0.15 -2.48 5.78 -26.60 -0.15 -2.63 16 20 C 0.18 3.30 2.53 -67.89 -0.17 3.13 16 21 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 22 N -0.72 -16.34 3.64 -53.39 -0.19 -16.53 16 23 C -0.24 -6.16 9.93 -15.06 -0.15 -6.31 16 24 H 0.07 1.75 7.83 -52.49 -0.41 1.33 16 25 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 26 N -0.93 -26.97 13.06 55.49 0.72 -26.24 16 27 Si 0.90 21.78 29.55 -169.99 -5.02 16.76 16 28 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 29 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 30 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 31 H 0.07 1.33 7.54 -51.92 -0.39 0.94 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.08 1.47 6.63 -51.93 -0.34 1.13 16 35 H 0.08 1.42 7.00 -51.93 -0.36 1.06 16 36 H 0.19 2.70 6.01 -52.49 -0.32 2.39 16 37 H 0.10 1.11 7.35 -51.93 -0.38 0.73 16 38 H 0.09 0.89 7.82 -51.93 -0.41 0.48 16 39 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.59 5.68 -51.93 -0.30 0.29 16 41 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 42 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 43 H 0.07 0.55 7.84 -51.93 -0.41 0.14 16 44 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.09 0.59 6.30 -51.93 -0.33 0.26 16 47 H 0.09 1.38 3.61 -51.93 -0.19 1.20 16 48 H 0.09 1.66 7.74 -51.93 -0.40 1.26 16 49 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 50 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 51 H 0.38 9.36 5.92 -40.82 -0.24 9.11 16 52 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 389.60 15.07 5.87 5.87 Total: -1.00 -31.23 389.60 -10.77 -42.00 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -8.25 Total: 10.66 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: -3.00 Total: 1.32 kcal Atomic # 7 Polarization: -65.75 SS G_CDS: -0.44 Total: -66.20 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.08 Total: -10.41 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.23 -10.77 -42.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036084318.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.801 kcal (2) G-P(sol) polarization free energy of solvation -31.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds