Wall clock time and date at job start Sat Apr 11 2020 08:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.52688 * 2 1 4 4 C 1.53626 * 109.42855 * 120.20837 * 2 1 3 5 5 N 1.46931 * 108.54209 * 174.72471 * 4 2 1 6 6 C 1.34774 * 120.63037 * 126.36576 * 5 4 2 7 7 O 1.21686 * 119.99983 * 358.64757 * 6 5 4 8 8 C 1.46768 * 119.99824 * 178.64905 * 6 5 4 9 9 C 1.36690 * 126.88043 * 331.76006 * 8 6 5 10 10 N 1.33312 * 107.78695 * 179.80857 * 9 8 6 11 11 C 1.30960 * 109.75203 * 359.81438 * 10 9 8 12 12 N 1.34519 * 108.95562 * 0.53476 * 11 10 9 13 13 C 1.46487 * 126.52882 * 178.88140 * 12 11 10 14 14 C 1.53032 * 109.55703 * 28.21539 * 13 12 11 15 15 C 1.52827 * 109.63012 * 270.61095 * 14 13 12 16 16 C 1.52587 * 110.30084 * 61.25196 * 15 14 13 17 17 C 1.50938 * 125.82738 * 181.00133 * 11 10 9 18 18 C 1.46923 * 118.73743 * 306.09237 * 5 4 2 19 19 C 1.53200 * 108.77677 * 53.86051 * 18 5 4 20 20 C 1.53036 * 109.49561 * 239.91609 * 2 1 3 21 21 H 1.08998 * 109.45329 * 58.67414 * 20 2 1 22 22 N 1.46500 * 109.46310 * 298.70416 * 20 2 1 23 23 C 1.36941 * 120.00126 * 154.93343 * 22 20 2 24 24 H 1.07995 * 119.99675 * 0.02562 * 23 22 20 25 25 C 1.38804 * 119.99973 * 179.97438 * 23 22 20 26 26 N 1.31619 * 120.00275 * 0.02562 * 25 23 22 27 27 Si 1.86807 * 120.00016 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.46957 * 60.00311 * 27 25 23 29 29 H 1.48499 * 109.47185 * 180.02562 * 27 25 23 30 30 H 1.48500 * 109.46837 * 300.00073 * 27 25 23 31 31 H 1.09007 * 109.47515 * 180.08353 * 1 2 3 32 32 H 1.09002 * 109.47468 * 300.08421 * 1 2 3 33 33 H 1.08996 * 109.47304 * 60.08063 * 1 2 3 34 34 H 1.08997 * 109.74551 * 54.98736 * 4 2 1 35 35 H 1.09002 * 109.66641 * 294.41500 * 4 2 1 36 36 H 1.07998 * 126.10273 * 359.77091 * 9 8 6 37 37 H 1.08996 * 109.45232 * 148.24121 * 13 12 11 38 38 H 1.08998 * 109.45364 * 268.18636 * 13 12 11 39 39 H 1.08997 * 109.44639 * 150.56258 * 14 13 12 40 40 H 1.09001 * 109.41882 * 30.63377 * 14 13 12 41 41 H 1.09004 * 109.33424 * 300.99822 * 15 14 13 42 42 H 1.08998 * 109.19962 * 181.42234 * 15 14 13 43 43 H 1.09007 * 109.45408 * 273.38117 * 16 15 14 44 44 H 1.09000 * 109.45882 * 153.43896 * 16 15 14 45 45 H 1.09007 * 109.50660 * 346.47040 * 17 11 10 46 46 H 1.08994 * 109.50684 * 106.59781 * 17 11 10 47 47 H 1.08997 * 109.58582 * 173.64728 * 18 5 4 48 48 H 1.09000 * 109.58564 * 294.07504 * 18 5 4 49 49 H 1.09002 * 109.49713 * 65.31609 * 19 18 5 50 50 H 1.09001 * 109.49412 * 185.38200 * 19 18 5 51 51 H 0.96998 * 120.00026 * 334.93322 * 22 20 2 52 52 H 0.97002 * 120.00014 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0410 -0.7289 1.2520 5 7 3.5046 -0.8292 1.1696 6 6 4.2810 -0.3865 2.1784 7 8 3.7723 0.1243 3.1587 8 6 5.7402 -0.5204 2.0944 9 6 6.4382 -1.4756 1.4097 10 7 7.7376 -1.2370 1.5885 11 6 7.8933 -0.1801 2.3461 12 7 6.6821 0.2923 2.6914 13 6 6.4090 1.4474 3.5500 14 6 7.5648 2.4453 3.4491 15 6 8.6229 2.1134 4.5007 16 6 9.1862 0.7155 4.2622 17 6 9.2134 0.4234 2.7601 18 6 4.1052 -1.4268 -0.0306 19 6 3.5708 -0.6951 -1.2660 20 6 2.0407 -0.7231 -1.2483 21 1 1.6582 -0.2244 -2.1388 22 7 1.5783 -2.1131 -1.2307 23 6 1.4467 -2.8059 -2.4046 24 1 1.6844 -2.3276 -3.3433 25 6 1.0091 -4.1230 -2.3879 26 7 0.7200 -4.7060 -1.2438 27 14 0.8290 -5.0678 -3.9893 28 1 2.1447 -5.1357 -4.6746 29 1 0.3488 -6.4432 -3.7013 30 1 -0.1503 -4.3754 -4.8651 31 1 -0.3634 -1.0277 0.0015 32 1 -0.3634 0.5151 0.8892 33 1 -0.3634 0.5126 -0.8907 34 1 1.6084 -1.7283 1.2986 35 1 1.7629 -0.1663 2.1432 36 1 6.0130 -2.2802 0.8282 37 1 5.4851 1.9281 3.2287 38 1 6.3050 1.1153 4.5830 39 1 7.1889 3.4543 3.6185 40 1 8.0095 2.3856 2.4557 41 1 8.1722 2.1564 5.4923 42 1 9.4304 2.8430 4.4395 43 1 8.5569 -0.0199 4.7637 44 1 10.1988 0.6590 4.6615 45 1 10.0189 -0.2772 2.5401 46 1 9.3773 1.3511 2.2118 47 1 5.1895 -1.3247 0.0139 48 1 3.8374 -2.4819 -0.0866 49 1 3.9159 0.3388 -1.2541 50 1 3.9339 -1.1895 -2.1670 51 1 1.3652 -2.5427 -0.3876 52 1 0.4138 -5.6263 -1.2322 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036084318.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:11:28 Heat of formation + Delta-G solvation = 26.322408 kcal Electronic energy + Delta-G solvation = -32104.154636 eV Core-core repulsion = 28104.167943 eV Total energy + Delta-G solvation = -3999.986693 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.62572 -41.17270 -39.06237 -38.29932 -35.97179 -34.74251 -34.57731 -33.04525 -31.94862 -30.97690 -30.72784 -28.01864 -26.94328 -26.53457 -25.48690 -25.27620 -23.51755 -23.00720 -21.57985 -20.88484 -20.53601 -19.78840 -19.25546 -18.23925 -17.72067 -17.12002 -16.85327 -16.60820 -16.30562 -16.06732 -15.84524 -15.66911 -15.53536 -15.00221 -14.92767 -14.83014 -14.63214 -14.33819 -14.16681 -13.87813 -13.72937 -13.50622 -13.01871 -12.99176 -12.88212 -12.79423 -12.67017 -12.61291 -12.42719 -12.15759 -11.97495 -11.91552 -11.89128 -11.72862 -11.58773 -11.49439 -11.35597 -11.17205 -10.97070 -10.83043 -10.71862 -9.76125 -9.45296 -8.90959 -7.87120 -5.13342 0.23503 1.30782 1.50986 1.51918 1.57686 1.68324 2.06531 2.12209 2.61080 3.22001 3.32381 3.46645 3.56579 3.65541 3.77736 3.85955 3.86805 4.01915 4.03448 4.08480 4.16967 4.20690 4.24766 4.29212 4.33403 4.37602 4.49551 4.57366 4.61590 4.68632 4.75361 4.81188 4.82577 4.88497 4.94167 4.99591 5.02906 5.08092 5.12500 5.17317 5.20190 5.26827 5.27882 5.29883 5.36113 5.41102 5.47099 5.59046 5.62197 6.05313 6.27779 6.34489 6.79258 6.97136 7.42286 8.17920 8.41827 9.35857 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017894 B = 0.002821 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.361754 B = 9923.476306 C =10845.039337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.096 4.096 3 H 0.085 0.915 4 C 0.127 3.873 5 N -0.583 5.583 6 C 0.591 3.409 7 O -0.580 6.580 8 C -0.101 4.101 9 C 0.025 3.975 10 N -0.522 5.522 11 C 0.236 3.764 12 N -0.419 5.419 13 C 0.101 3.899 14 C -0.134 4.134 15 C -0.119 4.119 16 C -0.121 4.121 17 C -0.037 4.037 18 C 0.098 3.902 19 C -0.140 4.140 20 C 0.173 3.827 21 H 0.049 0.951 22 N -0.723 5.723 23 C -0.226 4.226 24 H 0.075 0.925 25 C -0.072 4.072 26 N -0.968 5.968 27 Si 0.963 3.037 28 H -0.280 1.280 29 H -0.303 1.303 30 H -0.282 1.282 31 H 0.041 0.959 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.088 0.912 36 H 0.190 0.810 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.106 0.894 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.096 0.904 43 H 0.043 0.957 44 H 0.102 0.898 45 H 0.105 0.895 46 H 0.112 0.888 47 H 0.111 0.889 48 H 0.061 0.939 49 H 0.069 0.931 50 H 0.068 0.932 51 H 0.374 0.626 52 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.324 17.996 10.458 27.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.116 4.116 3 H 0.104 0.896 4 C 0.004 3.996 5 N -0.313 5.313 6 C 0.380 3.620 7 O -0.462 6.462 8 C -0.218 4.218 9 C -0.128 4.128 10 N -0.240 5.240 11 C -0.026 4.026 12 N -0.100 5.100 13 C -0.020 4.020 14 C -0.171 4.171 15 C -0.157 4.157 16 C -0.159 4.159 17 C -0.076 4.076 18 C -0.024 4.024 19 C -0.181 4.181 20 C 0.064 3.936 21 H 0.067 0.933 22 N -0.365 5.365 23 C -0.359 4.359 24 H 0.093 0.907 25 C -0.264 4.264 26 N -0.620 5.620 27 Si 0.793 3.207 28 H -0.206 1.206 29 H -0.229 1.229 30 H -0.208 1.208 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.106 0.894 36 H 0.207 0.793 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.124 0.876 40 H 0.098 0.902 41 H 0.091 0.909 42 H 0.115 0.885 43 H 0.062 0.938 44 H 0.121 0.879 45 H 0.124 0.876 46 H 0.130 0.870 47 H 0.128 0.872 48 H 0.079 0.921 49 H 0.088 0.912 50 H 0.086 0.914 51 H 0.207 0.793 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 17.619 17.927 10.557 27.262 hybrid contribution -1.599 -1.184 -0.395 2.029 sum 16.020 16.743 10.161 25.302 Atomic orbital electron populations 1.21599 0.93750 1.01637 1.01898 1.21696 0.96756 0.99167 0.93994 0.89635 1.21685 0.77981 1.00633 0.99265 1.47790 1.06877 1.59066 1.17538 1.16974 0.84699 0.77894 0.82411 1.90739 1.75678 1.47400 1.32422 1.20579 0.90682 1.01286 1.09266 1.23089 0.89260 0.99940 1.00539 1.70155 1.18535 1.16025 1.19330 1.24278 0.88827 0.92746 0.96738 1.45424 1.05305 1.23330 1.35900 1.22254 1.01212 0.84460 0.94047 1.22074 0.94614 0.98701 1.01703 1.21626 0.98599 0.96832 0.98602 1.21615 1.03361 0.97369 0.93564 1.20523 0.87631 1.01847 0.97591 1.22344 0.99421 0.97304 0.83341 1.22389 0.98631 0.99843 0.97187 1.20429 0.91972 0.85297 0.95857 0.93278 1.42567 1.79067 1.09209 1.05614 1.19515 1.34813 0.93864 0.87667 0.90727 1.25372 1.03604 0.98413 0.99058 1.69792 1.53816 1.12866 1.25490 0.85368 0.77810 0.77392 0.80107 1.20633 1.22928 1.20842 0.94030 0.91551 0.92084 0.92597 0.89379 0.79342 0.90045 0.89532 0.87601 0.90174 0.90853 0.88530 0.93767 0.87907 0.87625 0.86986 0.87190 0.92107 0.91222 0.91352 0.79264 0.94391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.08 9.05 71.98 0.65 -3.43 16 2 C -0.10 -3.06 2.69 -10.57 -0.03 -3.09 16 3 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 4 C 0.13 4.33 5.45 86.51 0.47 4.80 16 5 N -0.58 -19.55 2.97 -822.65 -2.44 -21.99 16 6 C 0.59 20.20 7.49 86.47 0.65 20.85 16 7 O -0.58 -21.94 15.17 -4.30 -0.07 -22.00 16 8 C -0.10 -3.11 6.47 40.04 0.26 -2.85 16 9 C 0.03 0.77 9.53 84.11 0.80 1.57 16 10 N -0.52 -15.23 11.20 -187.06 -2.10 -17.33 16 11 C 0.24 5.53 6.83 138.24 0.94 6.48 16 12 N -0.42 -10.50 3.10 -501.43 -1.55 -12.05 16 13 C 0.10 1.95 5.76 86.39 0.50 2.44 16 14 C -0.13 -1.40 5.55 30.55 0.17 -1.23 16 15 C -0.12 -0.84 5.68 30.40 0.17 -0.67 16 16 C -0.12 -1.19 5.67 30.47 0.17 -1.02 16 17 C -0.04 -0.49 5.54 29.94 0.17 -0.33 16 18 C 0.10 3.22 5.13 86.37 0.44 3.66 16 19 C -0.14 -4.57 5.78 30.68 0.18 -4.40 16 20 C 0.17 6.34 2.53 45.02 0.11 6.45 16 21 H 0.05 1.83 8.08 -2.39 -0.02 1.81 16 22 N -0.72 -33.51 3.64 -322.82 -1.18 -34.69 16 23 C -0.23 -11.83 9.93 84.03 0.83 -10.99 16 24 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16 25 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 26 N -0.97 -57.82 13.06 21.65 0.28 -57.54 16 27 Si 0.96 45.43 29.55 68.60 2.03 47.46 16 28 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 29 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 30 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 31 H 0.04 1.55 7.54 -2.38 -0.02 1.53 16 32 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.06 2.18 6.63 -2.39 -0.02 2.16 16 35 H 0.09 2.96 7.00 -2.39 -0.02 2.94 16 36 H 0.19 5.54 6.01 -2.91 -0.02 5.53 16 37 H 0.08 1.82 7.35 -2.39 -0.02 1.80 16 38 H 0.09 1.67 7.82 -2.39 -0.02 1.66 16 39 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.08 0.89 5.68 -2.39 -0.01 0.87 16 41 H 0.07 0.51 8.09 -2.38 -0.02 0.49 16 42 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 43 H 0.04 0.65 7.84 -2.38 -0.02 0.63 16 44 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 45 H 0.11 1.30 8.14 -2.38 -0.02 1.28 16 46 H 0.11 1.04 6.30 -2.39 -0.02 1.03 16 47 H 0.11 3.28 3.61 -2.39 -0.01 3.28 16 48 H 0.06 2.37 7.74 -2.39 -0.02 2.35 16 49 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 50 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 51 H 0.37 18.93 5.92 -92.71 -0.55 18.39 16 52 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 Total: -1.00 -68.88 389.60 2.33 -66.56 By element: Atomic # 1 Polarization: 36.48 SS G_CDS: 0.39 Total: 36.86 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: 6.96 Total: 14.72 kcal Atomic # 7 Polarization: -136.62 SS G_CDS: -6.98 Total: -143.60 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -0.07 Total: -22.00 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -68.88 2.33 -66.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036084318.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.878 kcal (2) G-P(sol) polarization free energy of solvation -68.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds