Wall clock time and date at job start Sat Apr 11 2020 08:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.49680 * 2 1 4 4 C 1.53628 * 109.45827 * 120.20550 * 2 1 3 5 5 N 1.46928 * 108.54271 * 174.74223 * 4 2 1 6 6 C 1.34778 * 120.62867 * 126.36780 * 5 4 2 7 7 O 1.21277 * 120.00135 * 359.72287 * 6 5 4 8 8 C 1.50702 * 119.99838 * 179.72123 * 6 5 4 9 9 N 1.46499 * 109.46795 * 180.02562 * 8 6 5 10 10 C 1.35314 * 126.49688 * 264.95604 * 9 8 6 11 11 N 1.30754 * 108.76399 * 180.02562 * 10 9 8 12 12 C 1.33578 * 109.15133 * 359.97438 * 11 10 9 13 13 C 1.35025 * 107.97617 * 0.05654 * 12 11 10 14 14 C 1.50652 * 124.45301 * 179.97438 * 13 12 11 15 15 C 1.53399 * 108.41426 * 343.53233 * 14 13 12 16 16 C 1.53210 * 109.40434 * 49.63435 * 15 14 13 17 17 C 1.50863 * 128.03458 * 180.08849 * 12 11 10 18 18 C 1.46925 * 118.73825 * 306.09481 * 5 4 2 19 19 C 1.53192 * 108.77463 * 53.86121 * 18 5 4 20 20 C 1.53039 * 109.49974 * 239.93259 * 2 1 3 21 21 H 1.08997 * 109.45968 * 298.67340 * 20 2 1 22 22 N 1.46502 * 109.45566 * 58.63097 * 20 2 1 23 23 C 1.36941 * 119.99587 * 205.06459 * 22 20 2 24 24 H 1.07991 * 120.00009 * 0.02562 * 23 22 20 25 25 C 1.38812 * 119.99792 * 179.97438 * 23 22 20 26 26 N 1.31627 * 119.99915 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 120.00115 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.46998 * 59.99977 * 27 25 23 29 29 H 1.48493 * 109.47085 * 180.02562 * 27 25 23 30 30 H 1.48500 * 109.46893 * 300.00582 * 27 25 23 31 31 H 1.08999 * 109.46668 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47479 * 300.06467 * 1 2 3 33 33 H 1.08997 * 109.46926 * 60.06656 * 1 2 3 34 34 H 1.09000 * 109.74073 * 55.00469 * 4 2 1 35 35 H 1.08999 * 109.66537 * 294.43417 * 4 2 1 36 36 H 1.09000 * 109.47187 * 59.99955 * 8 6 5 37 37 H 1.09000 * 109.47099 * 300.00062 * 8 6 5 38 38 H 1.07996 * 125.61755 * 0.02562 * 10 9 8 39 39 H 1.09002 * 109.68231 * 103.27382 * 14 13 12 40 40 H 1.08999 * 109.68240 * 223.79047 * 14 13 12 41 41 H 1.09001 * 109.47325 * 169.65539 * 15 14 13 42 42 H 1.09003 * 109.47330 * 289.66967 * 15 14 13 43 43 H 1.08994 * 109.44842 * 169.98823 * 16 15 14 44 44 H 1.09003 * 109.45384 * 50.02839 * 16 15 14 45 45 H 1.09003 * 109.67527 * 282.98493 * 17 12 11 46 46 H 1.09001 * 109.67461 * 43.48419 * 17 12 11 47 47 H 1.08999 * 109.58245 * 173.64315 * 18 5 4 48 48 H 1.08990 * 109.58711 * 293.92900 * 18 5 4 49 49 H 1.09005 * 109.50076 * 65.31343 * 19 18 5 50 50 H 1.08999 * 109.49747 * 185.41033 * 19 18 5 51 51 H 0.96997 * 120.00265 * 25.06777 * 22 20 2 52 52 H 0.97001 * 119.99758 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0418 -0.7288 1.2519 5 7 3.5053 -0.8283 1.1690 6 6 4.2819 -0.3852 2.1776 7 8 3.7739 0.1058 3.1634 8 6 5.7814 -0.5000 2.0804 9 7 6.3926 0.0473 3.2941 10 6 6.8601 1.3059 3.4626 11 7 7.3320 1.4203 4.6766 12 6 7.1840 0.2567 5.3157 13 6 6.5989 -0.6141 4.4658 14 6 6.2600 -2.0417 4.8077 15 6 7.0408 -2.4366 6.0676 16 6 6.8451 -1.3647 7.1447 17 6 7.5792 -0.0830 6.7315 18 6 4.1060 -1.4254 -0.0315 19 6 3.5709 -0.6939 -1.2665 20 6 2.0409 -0.7228 -1.2485 21 1 1.6972 -1.7571 -1.2354 22 7 1.5259 -0.0527 -2.4452 23 6 1.3946 -0.7494 -3.6169 24 1 1.6702 -1.7927 -3.6585 25 6 0.9062 -0.1147 -4.7507 26 7 0.5698 1.1568 -4.6997 27 14 0.7264 -1.0651 -6.3487 28 1 -0.2053 -2.2035 -6.1455 29 1 0.1883 -0.1664 -7.4013 30 1 2.0537 -1.5809 -6.7699 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3634 0.5148 0.8894 33 1 -0.3633 0.5128 -0.8906 34 1 1.6096 -1.7284 1.2984 35 1 1.7636 -0.1663 2.1431 36 1 6.1330 0.0581 1.2126 37 1 6.0594 -1.5486 1.9751 38 1 6.8457 2.0872 2.7172 39 1 5.1900 -2.1300 4.9962 40 1 6.5422 -2.6940 3.9814 41 1 6.6748 -3.3948 6.4366 42 1 8.1006 -2.5206 5.8269 43 1 7.2474 -1.7242 8.0918 44 1 5.7817 -1.1543 7.2584 45 1 8.6562 -0.2423 6.7838 46 1 7.2961 0.7324 7.3972 47 1 5.1902 -1.3227 0.0128 48 1 3.8409 -2.4812 -0.0861 49 1 3.9154 0.3402 -1.2546 50 1 3.9335 -1.1883 -2.1677 51 1 1.2780 0.8843 -2.4077 52 1 0.2288 1.6004 -5.4921 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036117873.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:11:35 Heat of formation + Delta-G solvation = 26.140831 kcal Electronic energy + Delta-G solvation = -31105.287134 eV Core-core repulsion = 27105.292568 eV Total energy + Delta-G solvation = -3999.994566 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.47418 -40.24156 -37.87089 -36.81707 -34.81021 -34.38300 -32.94753 -31.60850 -30.68300 -29.48702 -29.07686 -28.33798 -26.10384 -24.96702 -23.71010 -22.97972 -22.19461 -21.81850 -21.25810 -20.00755 -19.28678 -18.92703 -17.67875 -17.16411 -17.04461 -15.91630 -15.67706 -15.39590 -15.06620 -14.91407 -14.59977 -14.20876 -14.09591 -13.88503 -13.75261 -13.68522 -13.59875 -13.42361 -13.12576 -12.71324 -12.64012 -12.48139 -12.32653 -12.10470 -11.89340 -11.72334 -11.29376 -11.17064 -11.12989 -11.09941 -11.02239 -10.91040 -10.76498 -10.52536 -10.30904 -10.29996 -9.89481 -9.85441 -9.73252 -9.46478 -8.99553 -8.69063 -8.16030 -7.06495 -5.85793 -3.15320 1.83054 2.33195 2.43053 2.95551 3.08866 3.36279 3.41262 3.42697 4.14972 4.25307 4.32203 4.49413 4.50384 4.57100 4.62887 4.66469 4.83339 4.92196 5.10378 5.10904 5.12450 5.18508 5.23902 5.32248 5.39675 5.40051 5.41268 5.50022 5.56935 5.63513 5.64574 5.72476 5.80877 5.81724 5.95333 5.98969 6.01255 6.07762 6.15897 6.22752 6.28593 6.32337 6.37227 6.47983 6.67936 6.69675 6.81234 6.92066 7.04220 7.25062 7.59387 7.92588 8.03381 8.32097 9.43571 10.00063 10.34666 11.36357 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023879 B = 0.002136 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.287591 B =13107.667598 C =13221.953343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.109 4.109 3 H 0.069 0.931 4 C 0.121 3.879 5 N -0.601 5.601 6 C 0.497 3.503 7 O -0.528 6.528 8 C 0.086 3.914 9 N -0.434 5.434 10 C 0.185 3.815 11 N -0.485 5.485 12 C -0.001 4.001 13 C -0.013 4.013 14 C -0.043 4.043 15 C -0.111 4.111 16 C -0.119 4.119 17 C -0.031 4.031 18 C 0.104 3.896 19 C -0.153 4.153 20 C 0.184 3.816 21 H 0.048 0.952 22 N -0.720 5.720 23 C -0.242 4.242 24 H 0.069 0.931 25 C -0.011 4.011 26 N -0.931 5.931 27 Si 0.906 3.094 28 H -0.286 1.286 29 H -0.291 1.291 30 H -0.286 1.286 31 H 0.051 0.949 32 H 0.043 0.957 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.088 0.912 36 H 0.126 0.874 37 H 0.118 0.882 38 H 0.203 0.797 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.066 0.934 45 H 0.072 0.928 46 H 0.075 0.925 47 H 0.073 0.927 48 H 0.072 0.928 49 H 0.060 0.940 50 H 0.078 0.922 51 H 0.384 0.616 52 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.787 -7.903 18.689 23.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.129 4.129 3 H 0.088 0.912 4 C -0.002 4.002 5 N -0.335 5.335 6 C 0.282 3.718 7 O -0.404 6.404 8 C -0.041 4.041 9 N -0.116 5.116 10 C -0.096 4.096 11 N -0.202 5.202 12 C -0.131 4.131 13 C -0.128 4.128 14 C -0.081 4.081 15 C -0.149 4.149 16 C -0.157 4.157 17 C -0.069 4.069 18 C -0.019 4.019 19 C -0.194 4.194 20 C 0.073 3.927 21 H 0.066 0.934 22 N -0.360 5.360 23 C -0.373 4.373 24 H 0.087 0.913 25 C -0.208 4.208 26 N -0.579 5.579 27 Si 0.737 3.263 28 H -0.213 1.213 29 H -0.217 1.217 30 H -0.213 1.213 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.106 0.894 36 H 0.144 0.856 37 H 0.136 0.864 38 H 0.220 0.780 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.085 0.915 45 H 0.090 0.910 46 H 0.093 0.907 47 H 0.092 0.908 48 H 0.091 0.909 49 H 0.079 0.921 50 H 0.097 0.903 51 H 0.218 0.782 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 12.769 -7.079 19.253 24.163 hybrid contribution -0.605 -0.739 -1.810 2.047 sum 12.164 -7.818 17.443 22.657 Atomic orbital electron populations 1.21661 0.94003 1.01825 1.01959 1.21823 0.96705 0.99970 0.94414 0.91218 1.21848 0.77791 1.00974 0.99540 1.48173 1.07442 1.60084 1.17777 1.20582 0.88850 0.78944 0.83388 1.90767 1.74726 1.44019 1.30850 1.21744 0.91977 1.02838 0.87532 1.44576 1.44697 1.11664 1.10702 1.24946 1.01532 0.86387 0.96721 1.69954 1.21725 1.24541 1.04002 1.20385 1.05788 0.89888 0.97015 1.20805 1.07844 0.97140 0.86983 1.20081 1.00879 0.88947 0.98224 1.21548 1.00453 0.98569 0.94361 1.21623 1.01209 0.94715 0.98144 1.19892 0.99770 0.97274 0.89953 1.21950 0.97161 0.97870 0.84935 1.22715 1.00665 1.00393 0.95647 1.20182 0.90209 0.95773 0.86489 0.93353 1.42399 1.76449 1.11427 1.05753 1.19148 1.36352 0.94067 0.87717 0.91278 1.24746 1.01883 0.96025 0.98108 1.69649 1.49655 1.09474 1.29099 0.86294 0.77751 0.78735 0.83526 1.21269 1.21709 1.21300 0.93006 0.93788 0.90651 0.91329 0.89353 0.85642 0.86431 0.78010 0.90441 0.91296 0.91060 0.91451 0.91170 0.91526 0.90960 0.90668 0.90818 0.90944 0.92074 0.90304 0.78176 0.93387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.03 37.16 0.34 -1.78 16 2 C -0.11 -1.67 2.47 -90.27 -0.22 -1.89 16 3 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 4 C 0.12 1.60 5.75 -3.48 -0.02 1.58 16 5 N -0.60 -7.20 2.97 -172.50 -0.51 -7.71 16 6 C 0.50 6.23 7.77 -10.98 -0.09 6.15 16 7 O -0.53 -8.82 15.84 5.56 0.09 -8.73 16 8 C 0.09 0.78 4.83 -5.19 -0.03 0.75 16 9 N -0.43 -5.06 2.23 -115.26 -0.26 -5.31 16 10 C 0.19 2.32 12.57 -89.92 -1.13 1.19 16 11 N -0.48 -7.07 11.25 -10.74 -0.12 -7.19 16 12 C 0.00 -0.02 6.98 -82.90 -0.58 -0.60 16 13 C -0.01 -0.15 6.73 -81.85 -0.55 -0.70 16 14 C -0.04 -0.39 6.06 -27.70 -0.17 -0.56 16 15 C -0.11 -0.81 5.92 -26.42 -0.16 -0.96 16 16 C -0.12 -0.93 5.90 -26.43 -0.16 -1.09 16 17 C -0.03 -0.30 6.30 -27.61 -0.17 -0.48 16 18 C 0.10 1.08 6.34 -3.71 -0.02 1.05 16 19 C -0.15 -2.22 5.66 -26.61 -0.15 -2.37 16 20 C 0.18 3.19 2.19 -67.89 -0.15 3.04 16 21 H 0.05 0.86 8.08 -51.93 -0.42 0.44 16 22 N -0.72 -16.39 4.41 -53.39 -0.24 -16.62 16 23 C -0.24 -6.20 9.93 -15.06 -0.15 -6.35 16 24 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 25 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 26 N -0.93 -26.91 13.06 55.49 0.72 -26.18 16 27 Si 0.91 21.39 29.55 -169.99 -5.02 16.36 16 28 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 29 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 30 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 1.38 7.36 -51.93 -0.38 1.00 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.09 1.27 7.00 -51.93 -0.36 0.90 16 36 H 0.13 0.85 7.68 -51.93 -0.40 0.45 16 37 H 0.12 0.77 7.76 -51.93 -0.40 0.37 16 38 H 0.20 1.90 8.06 -52.49 -0.42 1.48 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.07 0.52 7.99 -51.93 -0.41 0.10 16 41 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 45 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.07 0.54 5.93 -51.93 -0.31 0.24 16 48 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 49 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 50 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 51 H 0.38 9.55 7.50 -40.82 -0.31 9.24 16 52 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 407.98 15.07 6.15 6.15 Total: -1.00 -33.40 407.98 -11.57 -44.97 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -8.88 Total: 7.69 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -3.50 Total: -3.43 kcal Atomic # 7 Polarization: -62.62 SS G_CDS: -0.40 Total: -63.02 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: 0.09 Total: -8.73 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.40 -11.57 -44.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036117873.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.109 kcal (2) G-P(sol) polarization free energy of solvation -33.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds