Wall clock time and date at job start Sat Apr 11 2020 08:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.49593 * 2 1 4 4 C 1.53187 * 109.49617 * 239.93427 * 2 1 3 5 5 N 1.46926 * 108.77227 * 185.38194 * 4 2 1 6 6 C 1.34787 * 120.62918 * 233.33389 * 5 4 2 7 7 O 1.21276 * 119.99928 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.99759 * 180.02562 * 6 5 4 9 9 N 1.46503 * 109.46635 * 179.97438 * 8 6 5 10 10 C 1.35304 * 126.49520 * 264.68506 * 9 8 6 11 11 N 1.30751 * 108.76629 * 179.79883 * 10 9 8 12 12 C 1.33579 * 109.14596 * 0.43571 * 11 10 9 13 13 C 1.35028 * 107.97822 * 359.77126 * 12 11 10 14 14 C 1.50653 * 124.45254 * 179.85412 * 13 12 11 15 15 C 1.53390 * 108.38857 * 343.65425 * 14 13 12 16 16 C 1.53122 * 109.44956 * 49.62247 * 15 14 13 17 17 C 1.50862 * 128.03316 * 179.87782 * 12 11 10 18 18 C 1.46924 * 118.73991 * 53.60881 * 5 4 2 19 19 C 1.53187 * 108.77642 * 306.38981 * 18 5 4 20 20 C 1.53038 * 109.52227 * 120.07778 * 2 1 3 21 21 H 1.08997 * 109.46507 * 301.34177 * 20 2 1 22 22 N 1.46502 * 109.45716 * 61.31416 * 20 2 1 23 23 C 1.36938 * 119.99955 * 204.99733 * 22 20 2 24 24 H 1.07995 * 119.99947 * 359.97438 * 23 22 20 25 25 C 1.38809 * 119.99996 * 179.97438 * 23 22 20 26 26 N 1.31623 * 120.00246 * 0.02562 * 25 23 22 27 27 Si 1.86804 * 120.00131 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.46749 * 59.99981 * 27 25 23 29 29 H 1.48496 * 109.47519 * 180.02562 * 27 25 23 30 30 H 1.48503 * 109.46961 * 300.00512 * 27 25 23 31 31 H 1.08998 * 109.47301 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47520 * 300.06667 * 1 2 3 33 33 H 1.09005 * 109.47086 * 60.06488 * 1 2 3 34 34 H 1.09002 * 109.58471 * 65.59613 * 4 2 1 35 35 H 1.08996 * 109.58894 * 305.16509 * 4 2 1 36 36 H 1.08998 * 109.47136 * 299.99814 * 8 6 5 37 37 H 1.09001 * 109.47288 * 59.99840 * 8 6 5 38 38 H 1.07997 * 125.61868 * 359.94850 * 10 9 8 39 39 H 1.09001 * 109.67951 * 103.37509 * 14 13 12 40 40 H 1.09000 * 109.67884 * 223.92169 * 14 13 12 41 41 H 1.09000 * 109.47350 * 289.63019 * 15 14 13 42 42 H 1.09000 * 109.47584 * 169.61482 * 15 14 13 43 43 H 1.09001 * 109.46461 * 169.96005 * 16 15 14 44 44 H 1.09005 * 109.45935 * 49.99261 * 16 15 14 45 45 H 1.09006 * 109.67754 * 282.99022 * 17 12 11 46 46 H 1.09004 * 109.67914 * 43.48839 * 17 12 11 47 47 H 1.09003 * 109.58516 * 66.18182 * 18 5 4 48 48 H 1.09002 * 109.58479 * 186.60340 * 18 5 4 49 49 H 1.08999 * 109.49975 * 294.68379 * 19 18 5 50 50 H 1.08998 * 109.50042 * 174.58459 * 19 18 5 51 51 H 0.96998 * 120.00388 * 24.99885 * 22 20 2 52 52 H 0.96995 * 120.00009 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0412 -0.7235 -1.2497 5 7 3.5046 -0.8281 -1.1701 6 6 4.2805 -0.3895 -2.1812 7 8 3.7719 0.0975 -3.1686 8 6 5.7800 -0.5044 -2.0847 9 7 6.3905 0.0376 -3.3013 10 6 6.7718 -0.6658 -4.3924 11 7 7.2699 0.1620 -5.2735 12 6 7.2333 1.4023 -4.7791 13 6 6.6870 1.3434 -3.5456 14 6 6.4724 2.5361 -2.6507 15 6 7.3244 3.6971 -3.1791 16 6 7.0835 3.8635 -4.6820 17 6 7.7007 2.6783 -5.4344 18 6 4.1059 -1.4255 0.0300 19 6 3.5715 -0.6942 1.2654 20 6 2.0414 -0.7229 1.2482 21 1 1.6590 -0.2245 2.1389 22 7 1.5795 -2.1131 1.2306 23 6 1.4500 -2.8064 2.4044 24 1 1.6887 -2.3285 3.3430 25 6 1.0119 -4.1235 2.3878 26 7 0.7214 -4.7061 1.2438 27 14 0.8358 -5.0695 3.9889 28 1 -0.1410 -4.3775 4.8678 29 1 0.3557 -6.4449 3.7010 30 1 2.1532 -5.1382 4.6707 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5148 0.8893 33 1 -0.3633 0.5128 -0.8906 34 1 1.7632 -0.1576 -2.1389 35 1 1.6057 -1.7214 -1.2981 36 1 6.1325 0.0573 -1.2196 37 1 6.0579 -1.5526 -1.9752 38 1 6.6778 -1.7345 -4.5163 39 1 5.4197 2.8187 -2.6618 40 1 6.7765 2.2909 -1.6331 41 1 8.3786 3.4845 -3.0014 42 1 7.0468 4.6160 -2.6626 43 1 7.5446 4.7903 -5.0234 44 1 6.0114 3.8984 -4.8763 45 1 8.7880 2.7389 -5.3859 46 1 7.3783 2.6957 -6.4755 47 1 3.8387 -2.4808 0.0860 48 1 5.1901 -1.3229 -0.0148 49 1 3.9160 0.3399 1.2535 50 1 3.9344 -1.1887 2.1664 51 1 1.3655 -2.5425 0.3876 52 1 0.4156 -5.6265 1.2322 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036117875.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:11:39 Heat of formation + Delta-G solvation = 28.143855 kcal Electronic energy + Delta-G solvation = -31648.999048 eV Core-core repulsion = 27649.091339 eV Total energy + Delta-G solvation = -3999.907709 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.39581 -40.14756 -37.90865 -36.75499 -34.50316 -34.24580 -32.93928 -31.54270 -30.59990 -29.30937 -29.01065 -28.28821 -26.02458 -24.87516 -23.65153 -23.57054 -22.12903 -21.80861 -21.20932 -19.81498 -18.92811 -18.39986 -17.62700 -17.29043 -16.89572 -15.78804 -15.60278 -15.30634 -14.89533 -14.69998 -14.59656 -14.25847 -14.07634 -14.02214 -13.77135 -13.58994 -13.42012 -13.25162 -13.15812 -12.64814 -12.62864 -12.41263 -12.30925 -12.02755 -11.68924 -11.50702 -11.32153 -11.10462 -11.06614 -11.03642 -10.97799 -10.91059 -10.61704 -10.61092 -10.30471 -10.15698 -9.96103 -9.82855 -9.65890 -9.35298 -9.02779 -8.43089 -8.08752 -7.08581 -5.88244 -3.17477 1.92207 2.49309 2.53155 3.09249 3.19115 3.35062 3.40658 3.41769 4.30674 4.33198 4.43579 4.49028 4.57330 4.65978 4.70338 4.76378 4.97762 5.01431 5.16619 5.17707 5.23824 5.30757 5.35812 5.39258 5.45428 5.47370 5.56854 5.59285 5.66206 5.70067 5.78267 5.79059 5.87474 5.93022 5.94848 6.05825 6.10160 6.13971 6.18442 6.25801 6.36640 6.38306 6.46182 6.55165 6.62860 6.76643 6.79140 6.87340 7.12962 7.45934 7.59152 8.08694 8.11097 8.30039 9.41765 9.97268 10.32167 11.33885 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020058 B = 0.002483 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.631621 B =11272.559480 C =11666.162412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.107 4.107 3 H 0.065 0.935 4 C 0.120 3.880 5 N -0.596 5.596 6 C 0.495 3.505 7 O -0.532 6.532 8 C 0.086 3.914 9 N -0.433 5.433 10 C 0.184 3.816 11 N -0.486 5.486 12 C -0.003 4.003 13 C -0.011 4.011 14 C -0.043 4.043 15 C -0.111 4.111 16 C -0.119 4.119 17 C -0.030 4.030 18 C 0.110 3.890 19 C -0.150 4.150 20 C 0.179 3.821 21 H 0.052 0.948 22 N -0.718 5.718 23 C -0.241 4.241 24 H 0.069 0.931 25 C -0.010 4.010 26 N -0.932 5.932 27 Si 0.905 3.095 28 H -0.286 1.286 29 H -0.292 1.292 30 H -0.287 1.287 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.043 0.957 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.118 0.882 37 H 0.124 0.876 38 H 0.203 0.797 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.066 0.934 45 H 0.071 0.929 46 H 0.074 0.926 47 H 0.090 0.910 48 H 0.066 0.934 49 H 0.049 0.951 50 H 0.076 0.924 51 H 0.384 0.616 52 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.608 14.266 -6.213 20.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.127 4.127 3 H 0.083 0.917 4 C -0.002 4.002 5 N -0.328 5.328 6 C 0.281 3.719 7 O -0.409 6.409 8 C -0.041 4.041 9 N -0.115 5.115 10 C -0.097 4.097 11 N -0.203 5.203 12 C -0.132 4.132 13 C -0.126 4.126 14 C -0.082 4.082 15 C -0.149 4.149 16 C -0.157 4.157 17 C -0.068 4.068 18 C -0.012 4.012 19 C -0.191 4.191 20 C 0.068 3.932 21 H 0.070 0.930 22 N -0.361 5.361 23 C -0.372 4.372 24 H 0.087 0.913 25 C -0.206 4.206 26 N -0.580 5.580 27 Si 0.736 3.264 28 H -0.213 1.213 29 H -0.218 1.218 30 H -0.213 1.213 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.135 0.865 37 H 0.142 0.858 38 H 0.219 0.781 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.085 0.915 45 H 0.090 0.910 46 H 0.093 0.907 47 H 0.108 0.892 48 H 0.085 0.915 49 H 0.067 0.933 50 H 0.095 0.905 51 H 0.219 0.781 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 12.545 14.142 -7.224 20.237 hybrid contribution -0.609 -0.968 1.668 2.023 sum 11.936 13.174 -5.556 18.625 Atomic orbital electron populations 1.21668 0.94096 1.03272 1.00524 1.21699 0.96637 0.98770 0.95629 0.91670 1.21688 0.77990 1.01779 0.98736 1.48129 1.07396 1.59543 1.17760 1.20531 0.88753 0.79133 0.83508 1.90752 1.74692 1.44715 1.30766 1.21748 0.92172 1.02822 0.87319 1.44574 1.45034 1.07130 1.14728 1.24919 1.02513 0.99212 0.83087 1.69943 1.20746 1.00738 1.28882 1.20369 1.06466 0.93666 0.92736 1.20808 1.07444 0.85145 0.99234 1.20081 1.01064 0.90525 0.96494 1.21526 0.99967 0.97252 0.96153 1.21605 1.01588 0.97660 0.94835 1.19880 0.99761 0.88473 0.98715 1.21819 0.95908 0.99563 0.83920 1.22533 1.00737 0.98556 0.97300 1.20206 0.90648 0.87440 0.94896 0.93006 1.42472 1.79035 1.07614 1.06973 1.19158 1.37628 0.93872 0.86534 0.91285 1.24712 1.02076 0.97203 0.96635 1.69632 1.51425 1.13183 1.23756 0.86312 0.77776 0.79244 0.83068 1.21316 1.21765 1.21341 0.90981 0.92707 0.93747 0.89804 0.90414 0.86452 0.85785 0.78059 0.90407 0.91266 0.91484 0.91079 0.91207 0.91534 0.91022 0.90714 0.89164 0.91531 0.93263 0.90495 0.78105 0.93387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.06 37.16 0.34 -1.76 16 2 C -0.11 -1.63 2.67 -90.50 -0.24 -1.87 16 3 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 4 C 0.12 1.89 5.42 -3.71 -0.02 1.87 16 5 N -0.60 -8.44 2.97 -172.77 -0.51 -8.96 16 6 C 0.50 7.03 7.77 -10.98 -0.09 6.94 16 7 O -0.53 -9.65 15.84 5.56 0.09 -9.56 16 8 C 0.09 0.90 4.83 -5.19 -0.03 0.88 16 9 N -0.43 -5.48 2.23 -115.26 -0.26 -5.74 16 10 C 0.18 2.44 12.57 -89.93 -1.13 1.31 16 11 N -0.49 -7.40 11.25 -10.74 -0.12 -7.52 16 12 C 0.00 -0.04 6.98 -82.89 -0.58 -0.62 16 13 C -0.01 -0.14 6.73 -81.85 -0.55 -0.70 16 14 C -0.04 -0.44 6.06 -27.70 -0.17 -0.61 16 15 C -0.11 -0.90 5.91 -26.47 -0.16 -1.05 16 16 C -0.12 -1.02 5.90 -26.49 -0.16 -1.17 16 17 C -0.03 -0.32 6.30 -27.62 -0.17 -0.49 16 18 C 0.11 1.47 6.08 -3.71 -0.02 1.45 16 19 C -0.15 -2.16 5.78 -26.61 -0.15 -2.31 16 20 C 0.18 3.05 2.53 -67.89 -0.17 2.88 16 21 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 22 N -0.72 -15.48 3.64 -53.39 -0.19 -15.68 16 23 C -0.24 -5.98 9.93 -15.06 -0.15 -6.13 16 24 H 0.07 1.68 7.83 -52.49 -0.41 1.27 16 25 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 26 N -0.93 -26.16 13.06 55.49 0.72 -25.43 16 27 Si 0.90 21.06 29.55 -169.99 -5.02 16.03 16 28 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 29 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 30 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 31 H 0.07 1.28 7.54 -51.93 -0.39 0.89 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.08 1.36 7.01 -51.93 -0.36 1.00 16 35 H 0.08 1.37 6.64 -51.93 -0.34 1.03 16 36 H 0.12 0.98 7.52 -51.93 -0.39 0.59 16 37 H 0.12 1.00 7.93 -51.93 -0.41 0.59 16 38 H 0.20 2.02 8.06 -52.49 -0.42 1.60 16 39 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.07 0.60 8.00 -51.93 -0.42 0.19 16 41 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 45 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.09 1.47 7.74 -51.93 -0.40 1.07 16 48 H 0.07 0.65 5.94 -51.93 -0.31 0.35 16 49 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 50 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 51 H 0.38 8.94 5.92 -40.82 -0.24 8.70 16 52 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 404.01 15.07 6.09 6.09 Total: -1.00 -31.98 404.01 -11.48 -43.46 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -8.73 Total: 9.05 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -3.54 Total: -1.75 kcal Atomic # 7 Polarization: -62.96 SS G_CDS: -0.36 Total: -63.32 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.09 Total: -9.56 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.98 -11.48 -43.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036117875.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.603 kcal (2) G-P(sol) polarization free energy of solvation -31.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds