Wall clock time and date at job start Sat Apr 11 2020 08:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.49593 * 2 1 4 4 C 1.53187 * 109.49617 * 239.93427 * 2 1 3 5 5 N 1.46926 * 108.77227 * 185.38194 * 4 2 1 6 6 C 1.34787 * 120.62918 * 233.33389 * 5 4 2 7 7 O 1.21276 * 119.99928 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.99759 * 180.02562 * 6 5 4 9 9 N 1.46503 * 109.46635 * 179.97438 * 8 6 5 10 10 C 1.35304 * 126.49520 * 264.68506 * 9 8 6 11 11 N 1.30751 * 108.76629 * 179.79883 * 10 9 8 12 12 C 1.33579 * 109.14596 * 0.43571 * 11 10 9 13 13 C 1.35028 * 107.97822 * 359.77126 * 12 11 10 14 14 C 1.50653 * 124.45254 * 179.85412 * 13 12 11 15 15 C 1.53390 * 108.38857 * 343.65425 * 14 13 12 16 16 C 1.53122 * 109.44956 * 49.62247 * 15 14 13 17 17 C 1.50862 * 128.03316 * 179.87782 * 12 11 10 18 18 C 1.46924 * 118.73991 * 53.60881 * 5 4 2 19 19 C 1.53187 * 108.77642 * 306.38981 * 18 5 4 20 20 C 1.53038 * 109.52227 * 120.07778 * 2 1 3 21 21 H 1.08997 * 109.46507 * 301.34177 * 20 2 1 22 22 N 1.46502 * 109.45716 * 61.31416 * 20 2 1 23 23 C 1.36938 * 119.99955 * 204.99733 * 22 20 2 24 24 H 1.07995 * 119.99947 * 359.97438 * 23 22 20 25 25 C 1.38809 * 119.99996 * 179.97438 * 23 22 20 26 26 N 1.31623 * 120.00246 * 0.02562 * 25 23 22 27 27 Si 1.86804 * 120.00131 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.46749 * 59.99981 * 27 25 23 29 29 H 1.48496 * 109.47519 * 180.02562 * 27 25 23 30 30 H 1.48503 * 109.46961 * 300.00512 * 27 25 23 31 31 H 1.08998 * 109.47301 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47520 * 300.06667 * 1 2 3 33 33 H 1.09005 * 109.47086 * 60.06488 * 1 2 3 34 34 H 1.09002 * 109.58471 * 65.59613 * 4 2 1 35 35 H 1.08996 * 109.58894 * 305.16509 * 4 2 1 36 36 H 1.08998 * 109.47136 * 299.99814 * 8 6 5 37 37 H 1.09001 * 109.47288 * 59.99840 * 8 6 5 38 38 H 1.07997 * 125.61868 * 359.94850 * 10 9 8 39 39 H 1.09001 * 109.67951 * 103.37509 * 14 13 12 40 40 H 1.09000 * 109.67884 * 223.92169 * 14 13 12 41 41 H 1.09000 * 109.47350 * 289.63019 * 15 14 13 42 42 H 1.09000 * 109.47584 * 169.61482 * 15 14 13 43 43 H 1.09001 * 109.46461 * 169.96005 * 16 15 14 44 44 H 1.09005 * 109.45935 * 49.99261 * 16 15 14 45 45 H 1.09006 * 109.67754 * 282.99022 * 17 12 11 46 46 H 1.09004 * 109.67914 * 43.48839 * 17 12 11 47 47 H 1.09003 * 109.58516 * 66.18182 * 18 5 4 48 48 H 1.09002 * 109.58479 * 186.60340 * 18 5 4 49 49 H 1.08999 * 109.49975 * 294.68379 * 19 18 5 50 50 H 1.08998 * 109.50042 * 174.58459 * 19 18 5 51 51 H 0.96998 * 120.00388 * 24.99885 * 22 20 2 52 52 H 0.96995 * 120.00009 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0412 -0.7235 -1.2497 5 7 3.5046 -0.8281 -1.1701 6 6 4.2805 -0.3895 -2.1812 7 8 3.7719 0.0975 -3.1686 8 6 5.7800 -0.5044 -2.0847 9 7 6.3905 0.0376 -3.3013 10 6 6.7718 -0.6658 -4.3924 11 7 7.2699 0.1620 -5.2735 12 6 7.2333 1.4023 -4.7791 13 6 6.6870 1.3434 -3.5456 14 6 6.4724 2.5361 -2.6507 15 6 7.3244 3.6971 -3.1791 16 6 7.0835 3.8635 -4.6820 17 6 7.7007 2.6783 -5.4344 18 6 4.1059 -1.4255 0.0300 19 6 3.5715 -0.6942 1.2654 20 6 2.0414 -0.7229 1.2482 21 1 1.6590 -0.2245 2.1389 22 7 1.5795 -2.1131 1.2306 23 6 1.4500 -2.8064 2.4044 24 1 1.6887 -2.3285 3.3430 25 6 1.0119 -4.1235 2.3878 26 7 0.7214 -4.7061 1.2438 27 14 0.8358 -5.0695 3.9889 28 1 -0.1410 -4.3775 4.8678 29 1 0.3557 -6.4449 3.7010 30 1 2.1532 -5.1382 4.6707 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5148 0.8893 33 1 -0.3633 0.5128 -0.8906 34 1 1.7632 -0.1576 -2.1389 35 1 1.6057 -1.7214 -1.2981 36 1 6.1325 0.0573 -1.2196 37 1 6.0579 -1.5526 -1.9752 38 1 6.6778 -1.7345 -4.5163 39 1 5.4197 2.8187 -2.6618 40 1 6.7765 2.2909 -1.6331 41 1 8.3786 3.4845 -3.0014 42 1 7.0468 4.6160 -2.6626 43 1 7.5446 4.7903 -5.0234 44 1 6.0114 3.8984 -4.8763 45 1 8.7880 2.7389 -5.3859 46 1 7.3783 2.6957 -6.4755 47 1 3.8387 -2.4808 0.0860 48 1 5.1901 -1.3229 -0.0148 49 1 3.9160 0.3399 1.2535 50 1 3.9344 -1.1887 2.1664 51 1 1.3655 -2.5425 0.3876 52 1 0.4156 -5.6265 1.2322 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036117875.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:11:38 Heat of formation + Delta-G solvation = 11.535140 kcal Electronic energy + Delta-G solvation = -31649.719256 eV Core-core repulsion = 27649.091339 eV Total energy + Delta-G solvation = -4000.627917 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -43.32406 -41.33497 -39.19432 -37.50477 -35.92692 -35.27866 -34.44177 -32.99360 -31.40980 -30.92194 -29.85157 -29.28286 -27.28903 -26.22635 -25.26122 -24.43573 -23.08023 -22.89944 -22.21101 -20.90435 -19.79980 -19.68171 -19.24448 -18.52961 -17.91877 -16.86259 -16.75119 -16.43289 -16.24211 -15.91508 -15.67489 -15.55108 -15.31020 -14.96709 -14.78219 -14.72557 -14.46490 -14.37449 -14.17255 -14.13665 -13.63917 -13.43263 -13.27125 -13.00708 -12.96343 -12.83013 -12.80937 -12.68071 -12.41257 -12.16737 -11.98211 -11.92394 -11.81962 -11.75446 -11.72729 -11.58445 -11.28377 -11.15982 -10.84724 -10.77182 -10.37643 -9.67496 -9.02115 -8.91622 -7.88222 -5.14130 0.95583 1.40624 1.50620 1.51612 1.57252 1.62925 2.06536 2.17069 2.60374 3.29533 3.46115 3.52153 3.67309 3.75575 3.84107 3.87954 3.96655 3.99870 4.02388 4.08031 4.09607 4.24166 4.29902 4.37957 4.38109 4.50433 4.58689 4.64880 4.66004 4.69274 4.72216 4.82342 4.82708 4.95048 5.01810 5.03997 5.11711 5.13225 5.17537 5.19836 5.27872 5.28677 5.31196 5.45996 5.47184 5.49529 5.60298 5.62103 5.87697 6.19210 6.33639 6.36645 6.97984 7.14013 7.41532 8.18208 8.40766 9.34752 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020058 B = 0.002483 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.631621 B =11272.559480 C =11666.162412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.096 4.096 3 H 0.087 0.913 4 C 0.126 3.874 5 N -0.593 5.593 6 C 0.497 3.503 7 O -0.576 6.576 8 C 0.089 3.911 9 N -0.436 5.436 10 C 0.171 3.829 11 N -0.523 5.523 12 C -0.032 4.032 13 C -0.019 4.019 14 C -0.043 4.043 15 C -0.107 4.107 16 C -0.115 4.115 17 C -0.032 4.032 18 C 0.114 3.886 19 C -0.142 4.142 20 C 0.171 3.829 21 H 0.047 0.953 22 N -0.725 5.725 23 C -0.224 4.224 24 H 0.076 0.924 25 C -0.073 4.073 26 N -0.969 5.969 27 Si 0.961 3.039 28 H -0.284 1.284 29 H -0.305 1.305 30 H -0.278 1.278 31 H 0.038 0.962 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.050 0.950 36 H 0.151 0.849 37 H 0.154 0.846 38 H 0.225 0.775 39 H 0.065 0.935 40 H 0.089 0.911 41 H 0.073 0.927 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.051 0.949 45 H 0.081 0.919 46 H 0.065 0.935 47 H 0.057 0.943 48 H 0.113 0.887 49 H 0.081 0.919 50 H 0.071 0.929 51 H 0.373 0.627 52 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.695 16.337 -4.616 22.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.116 4.116 3 H 0.105 0.895 4 C 0.003 3.997 5 N -0.325 5.325 6 C 0.285 3.715 7 O -0.456 6.456 8 C -0.037 4.037 9 N -0.117 5.117 10 C -0.110 4.110 11 N -0.241 5.241 12 C -0.160 4.160 13 C -0.134 4.134 14 C -0.081 4.081 15 C -0.145 4.145 16 C -0.153 4.153 17 C -0.070 4.070 18 C -0.007 4.007 19 C -0.183 4.183 20 C 0.062 3.938 21 H 0.065 0.935 22 N -0.366 5.366 23 C -0.357 4.357 24 H 0.094 0.906 25 C -0.265 4.265 26 N -0.621 5.621 27 Si 0.792 3.208 28 H -0.211 1.211 29 H -0.232 1.232 30 H -0.204 1.204 31 H 0.058 0.942 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.068 0.932 36 H 0.169 0.831 37 H 0.172 0.828 38 H 0.241 0.759 39 H 0.083 0.917 40 H 0.107 0.893 41 H 0.092 0.908 42 H 0.110 0.890 43 H 0.112 0.888 44 H 0.069 0.931 45 H 0.099 0.901 46 H 0.084 0.916 47 H 0.076 0.924 48 H 0.131 0.869 49 H 0.099 0.901 50 H 0.089 0.911 51 H 0.206 0.794 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 14.665 16.264 -5.586 22.600 hybrid contribution -1.283 -1.533 1.121 2.292 sum 13.382 14.730 -4.464 20.396 Atomic orbital electron populations 1.21612 0.94437 1.01423 1.01660 1.21609 0.96332 0.99366 0.94290 0.89504 1.21455 0.79411 1.00117 0.98726 1.48129 1.06642 1.59419 1.18269 1.21155 0.90272 0.77750 0.82347 1.90743 1.75864 1.46641 1.32341 1.21982 0.88899 1.05187 0.87592 1.44717 1.44752 1.07121 1.15137 1.25431 1.02193 1.00189 0.83167 1.69914 1.22122 1.01868 1.30215 1.20960 1.07259 0.94141 0.93660 1.21322 1.06593 0.85995 0.99483 1.20203 1.00705 0.90067 0.97141 1.21543 1.00001 0.97353 0.95558 1.21596 1.00608 0.97716 0.95358 1.19987 1.00438 0.88217 0.98335 1.21827 0.98476 0.97397 0.83040 1.22397 0.97894 1.00552 0.97460 1.20456 0.92773 0.85003 0.95523 0.93540 1.42593 1.79220 1.09265 1.05538 1.19516 1.34660 0.93722 0.87754 0.90602 1.25359 1.03674 0.98538 0.98911 1.69787 1.53906 1.12866 1.25507 0.85391 0.77874 0.77346 0.80192 1.21058 1.23155 1.20394 0.94236 0.92120 0.92068 0.90529 0.93188 0.83148 0.82841 0.75889 0.91694 0.89253 0.90784 0.88965 0.88843 0.93064 0.90059 0.91646 0.92432 0.86852 0.90084 0.91084 0.79372 0.94449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.01 9.06 71.98 0.65 -3.36 16 2 C -0.10 -2.78 2.67 -10.72 -0.03 -2.81 16 3 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 4 C 0.13 3.92 5.42 86.36 0.47 4.39 16 5 N -0.59 -15.71 2.97 -818.91 -2.43 -18.14 16 6 C 0.50 13.07 7.77 87.66 0.68 13.75 16 7 O -0.58 -20.50 15.84 -3.02 -0.05 -20.55 16 8 C 0.09 1.55 4.83 85.63 0.41 1.96 16 9 N -0.44 -10.14 2.23 -518.56 -1.16 -11.29 16 10 C 0.17 4.39 12.57 180.11 2.26 6.65 16 11 N -0.52 -15.89 11.25 -187.90 -2.11 -18.00 16 12 C -0.03 -0.85 6.98 41.61 0.29 -0.56 16 13 C -0.02 -0.45 6.73 41.14 0.28 -0.17 16 14 C -0.04 -0.75 6.06 29.96 0.18 -0.57 16 15 C -0.11 -1.41 5.91 30.77 0.18 -1.23 16 16 C -0.11 -1.77 5.90 30.75 0.18 -1.58 16 17 C -0.03 -0.65 6.30 30.02 0.19 -0.46 16 18 C 0.11 2.74 6.08 86.36 0.53 3.26 16 19 C -0.14 -3.64 5.78 30.67 0.18 -3.46 16 20 C 0.17 5.57 2.53 45.02 0.11 5.69 16 21 H 0.05 1.58 8.08 -2.39 -0.02 1.56 16 22 N -0.72 -31.30 3.64 -322.82 -1.18 -32.47 16 23 C -0.22 -11.09 9.93 84.03 0.83 -10.25 16 24 H 0.08 3.59 7.83 -2.91 -0.02 3.57 16 25 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 26 N -0.97 -55.97 13.06 21.65 0.28 -55.68 16 27 Si 0.96 43.62 29.55 68.60 2.03 45.65 16 28 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 29 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 30 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 31 H 0.04 1.44 7.54 -2.39 -0.02 1.42 16 32 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 34 H 0.08 2.50 7.01 -2.39 -0.02 2.49 16 35 H 0.05 1.84 6.64 -2.39 -0.02 1.82 16 36 H 0.15 1.67 7.52 -2.39 -0.02 1.66 16 37 H 0.15 1.81 7.93 -2.39 -0.02 1.80 16 38 H 0.22 4.24 8.06 -2.91 -0.02 4.22 16 39 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.09 1.19 8.00 -2.39 -0.02 1.17 16 41 H 0.07 0.90 8.12 -2.39 -0.02 0.88 16 42 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.05 0.94 8.12 -2.38 -0.02 0.92 16 45 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 46 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 47 H 0.06 1.81 7.74 -2.39 -0.02 1.79 16 48 H 0.11 1.66 5.94 -2.39 -0.01 1.65 16 49 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 50 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 51 H 0.37 17.87 5.92 -92.71 -0.55 17.33 16 52 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 Total: -1.00 -72.56 404.01 3.61 -68.95 By element: Atomic # 1 Polarization: 33.34 SS G_CDS: 0.36 Total: 33.70 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: 7.87 Total: 7.84 kcal Atomic # 7 Polarization: -129.00 SS G_CDS: -6.60 Total: -135.59 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.05 Total: -20.55 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -72.56 3.61 -68.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036117875.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.483 kcal (2) G-P(sol) polarization free energy of solvation -72.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds