Wall clock time and date at job start Sat Apr 11 2020 08:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86798 * 119.99840 * 2 1 4 4 H 1.48511 * 109.46803 * 239.99455 * 3 2 1 5 5 H 1.48492 * 109.47267 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47245 * 119.99775 * 3 2 1 7 7 C 1.38815 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00101 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00064 * 359.97438 * 7 2 1 10 10 C 1.47786 * 134.40486 * 179.97438 * 9 7 2 11 11 C 1.52878 * 85.78530 * 156.15044 * 10 9 7 12 12 C 1.47790 * 134.40309 * 0.03128 * 9 7 2 13 13 C 1.53466 * 115.59757 * 140.25768 * 11 10 9 14 14 C 1.54731 * 103.72293 * 152.75981 * 13 11 10 15 15 H 1.09005 * 110.51112 * 119.54800 * 14 13 11 16 16 N 1.46508 * 110.51092 * 242.11032 * 14 13 11 17 17 C 1.34777 * 120.00032 * 205.00237 * 16 14 13 18 18 O 1.21728 * 120.00263 * 0.02562 * 17 16 14 19 19 C 1.46409 * 119.99710 * 180.02562 * 17 16 14 20 20 C 1.35778 * 124.95813 * 179.97438 * 19 17 16 21 21 C 1.38876 * 115.18596 * 180.02562 * 20 19 17 22 22 N 1.39741 * 139.91522 * 179.97438 * 21 20 19 23 23 H 0.97006 * 125.62989 * 0.29386 * 22 21 20 24 24 C 1.36215 * 108.73368 * 180.02562 * 22 21 20 25 25 C 1.34500 * 109.29611 * 0.02562 * 24 22 21 26 26 C 1.38244 * 113.38849 * 0.02562 * 21 20 19 27 27 S 1.75622 * 124.96025 * 0.02562 * 19 17 16 28 28 C 1.54542 * 104.07794 * 0.76088 * 14 13 11 29 29 O 1.43247 * 115.85484 * 265.50472 * 11 10 9 30 30 H 0.96995 * 119.99878 * 0.02562 * 1 2 3 31 31 H 1.08999 * 113.81747 * 41.93667 * 10 9 7 32 32 H 1.08993 * 113.82410 * 270.36617 * 10 9 7 33 33 H 1.09005 * 113.81900 * 89.63645 * 12 9 7 34 34 H 1.08994 * 113.82259 * 318.06898 * 12 9 7 35 35 H 1.09007 * 110.57524 * 34.20032 * 13 11 10 36 36 H 1.09001 * 110.57681 * 271.32339 * 13 11 10 37 37 H 0.97003 * 119.99426 * 25.00601 * 16 14 13 38 38 H 1.07999 * 122.40883 * 0.04905 * 20 19 17 39 39 H 1.08002 * 125.34903 * 179.97438 * 24 22 21 40 40 H 1.08005 * 126.07563 * 179.97438 * 25 24 22 41 41 H 1.09003 * 110.32993 * 95.25478 * 28 14 13 42 42 H 1.08993 * 110.33251 * 217.47848 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3257 -2.3880 0.0016 10 6 1.7230 -3.8115 0.0019 11 6 0.3501 -4.0779 0.6196 12 6 -0.1058 -2.7557 0.0018 13 6 -0.3741 -5.3315 0.1104 14 6 -1.2801 -5.7393 1.2966 15 1 -2.3287 -5.7225 0.9997 16 7 -0.9097 -7.0672 1.7926 17 6 -1.8196 -7.8234 2.4380 18 8 -2.9494 -7.4034 2.6084 19 6 -1.4492 -9.1502 2.9340 20 6 -2.2823 -9.9939 3.5957 21 6 -1.7178 -11.2045 3.9756 22 7 -2.0652 -12.3853 4.6372 23 1 -2.9374 -12.5887 5.0099 24 6 -0.9784 -13.2060 4.6672 25 6 0.0531 -12.6002 4.0523 26 6 -0.3917 -11.3316 3.6062 27 16 0.1377 -9.8823 2.7613 28 6 -1.0010 -4.6631 2.3701 29 8 0.3111 -4.1454 2.0499 30 1 -0.4850 0.8400 -0.0004 31 1 2.5563 -4.0358 0.6678 32 1 1.8467 -4.2343 -0.9950 33 1 -0.5337 -2.8600 -0.9953 34 1 -0.7168 -2.1461 0.6675 35 1 0.3414 -6.1224 -0.1147 36 1 -0.9755 -5.0963 -0.7678 37 1 -0.0095 -7.4020 1.6564 38 1 -3.3102 -9.7418 3.8108 39 1 -0.9493 -14.1883 5.1151 40 1 1.0444 -13.0085 3.9219 41 1 -1.7456 -3.8692 2.3129 42 1 -0.9993 -5.1109 3.3638 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053995371.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:12:44 Heat of formation + Delta-G solvation = 63.183395 kcal Electronic energy + Delta-G solvation = -27000.090942 eV Core-core repulsion = 23075.070682 eV Total energy + Delta-G solvation = -3925.020260 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.54875 -40.34197 -39.16058 -36.20552 -35.31226 -34.32599 -32.05272 -31.32813 -30.69909 -28.65980 -27.79310 -25.85167 -24.91097 -24.41280 -22.44922 -21.83983 -21.20638 -20.76742 -20.01665 -18.99173 -18.73077 -17.13341 -16.68649 -16.48566 -15.79498 -15.46308 -15.27136 -15.09781 -14.91066 -14.65958 -14.51096 -14.10974 -13.87595 -13.79443 -13.34946 -13.11298 -12.95160 -12.72031 -12.30546 -11.95604 -11.77280 -11.53521 -11.43901 -11.22188 -11.18427 -11.06514 -10.80298 -10.54303 -10.38708 -10.08830 -10.04294 -9.75193 -9.50035 -9.29097 -8.79447 -8.72059 -8.46354 -7.99367 -6.83900 -5.70753 -3.02569 0.24008 1.13150 1.67179 2.06940 2.27366 2.56406 3.03845 3.07733 3.44364 3.47951 3.49446 4.28526 4.43389 4.50872 4.52612 4.60683 4.71379 4.93011 5.05688 5.10440 5.20585 5.27957 5.35301 5.41914 5.51071 5.57525 5.64143 5.66726 5.84871 5.99211 6.03809 6.08372 6.11684 6.35214 6.37426 6.43656 6.51596 6.62743 6.98551 6.99429 7.23811 7.33339 7.52717 7.70661 8.01455 8.03225 9.09607 9.76160 10.62976 11.46603 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.032191 B = 0.002012 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.587102 B =13914.531098 C =14354.030946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.009 4.009 3 Si 0.913 3.087 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.220 4.220 8 H 0.080 0.920 9 N -0.605 5.605 10 C 0.130 3.870 11 C 0.055 3.945 12 C 0.152 3.848 13 C -0.146 4.146 14 C 0.113 3.887 15 H 0.107 0.893 16 N -0.710 5.710 17 C 0.592 3.408 18 O -0.531 6.531 19 C -0.237 4.237 20 C -0.030 4.030 21 C 0.022 3.978 22 N -0.557 5.557 23 H 0.420 0.580 24 C 0.059 3.941 25 C -0.172 4.172 26 C -0.187 4.187 27 S 0.169 5.831 28 C 0.038 3.962 29 O -0.336 6.336 30 H 0.254 0.746 31 H 0.052 0.948 32 H 0.048 0.952 33 H 0.036 0.964 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.400 0.600 38 H 0.150 0.850 39 H 0.179 0.821 40 H 0.148 0.852 41 H 0.072 0.928 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.117 -29.405 7.552 30.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.205 4.205 3 Si 0.743 3.257 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.347 4.347 8 H 0.097 0.903 9 N -0.331 5.331 10 C 0.004 3.996 11 C 0.014 3.986 12 C 0.027 3.973 13 C -0.185 4.185 14 C 0.008 3.992 15 H 0.124 0.876 16 N -0.361 5.361 17 C 0.378 3.622 18 O -0.409 6.409 19 C -0.357 4.357 20 C -0.066 4.066 21 C -0.091 4.091 22 N -0.158 5.158 23 H 0.258 0.742 24 C -0.075 4.075 25 C -0.202 4.202 26 C -0.309 4.309 27 S 0.432 5.568 28 C -0.040 4.040 29 O -0.254 6.254 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.053 0.947 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.110 0.890 37 H 0.235 0.765 38 H 0.167 0.833 39 H 0.196 0.804 40 H 0.166 0.834 41 H 0.090 0.910 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.499 -28.159 7.200 29.275 hybrid contribution -0.993 0.016 0.606 1.163 sum -4.492 -28.143 7.807 29.549 Atomic orbital electron populations 1.69801 1.05006 1.25393 1.56759 1.24776 0.95693 0.97504 1.02545 0.86185 0.78449 0.83138 0.77887 1.21236 1.21596 1.21085 1.18943 0.90211 0.81862 1.43710 0.90262 1.45829 1.02037 0.99136 1.86114 1.22504 0.93822 0.86717 0.96567 1.23793 0.98710 0.94265 0.81867 1.22611 0.88706 0.88977 0.97049 1.23090 0.98763 0.98983 0.97697 1.22518 1.00962 0.81286 0.94390 0.87550 1.45968 1.14397 1.17687 1.58061 1.16842 0.84950 0.82678 0.77747 1.90846 1.20012 1.72650 1.57435 1.23735 0.98994 1.00326 1.12664 1.19233 1.00869 0.89480 0.97027 1.17993 0.94117 0.90913 1.06107 1.41912 1.12950 1.12829 1.48109 0.74224 1.21892 0.85872 0.96825 1.02926 1.20156 1.00128 0.92946 1.06923 1.23220 0.97548 1.01077 1.09043 1.83817 1.09109 1.06382 1.57496 1.23813 0.87038 0.94890 0.98301 1.89021 1.31104 1.85239 1.20073 0.93641 0.92960 0.93498 0.94658 0.90365 0.90197 0.89022 0.76483 0.83271 0.80434 0.83438 0.91012 0.89444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.94 11.40 55.49 0.63 -27.31 16 2 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 3 Si 0.91 22.68 29.55 -169.99 -5.02 17.66 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 7 C -0.22 -6.34 10.70 -15.06 -0.16 -6.50 16 8 H 0.08 2.20 7.83 -52.49 -0.41 1.78 16 9 N -0.61 -15.96 3.71 -183.58 -0.68 -16.64 16 10 C 0.13 2.69 8.47 -3.40 -0.03 2.66 16 11 C 0.05 1.05 1.28 -90.65 -0.12 0.94 16 12 C 0.15 3.62 6.99 -3.39 -0.02 3.59 16 13 C -0.15 -2.08 6.25 -25.58 -0.16 -2.24 16 14 C 0.11 1.59 3.49 -66.20 -0.23 1.36 16 15 H 0.11 1.50 7.55 -51.93 -0.39 1.11 16 16 N -0.71 -8.89 5.08 -53.52 -0.27 -9.16 16 17 C 0.59 8.01 7.77 -12.97 -0.10 7.91 16 18 O -0.53 -8.74 16.42 5.16 0.08 -8.65 16 19 C -0.24 -2.73 6.38 -37.18 -0.24 -2.97 16 20 C -0.03 -0.32 9.88 -40.23 -0.40 -0.71 16 21 C 0.02 0.21 7.67 -84.01 -0.64 -0.44 16 22 N -0.56 -3.34 6.21 -10.90 -0.07 -3.41 16 23 H 0.42 1.24 8.96 -40.82 -0.37 0.87 16 24 C 0.06 0.30 11.85 -16.93 -0.20 0.10 16 25 C -0.17 -1.25 10.84 -39.61 -0.43 -1.68 16 26 C -0.19 -1.81 7.31 -38.28 -0.28 -2.09 16 27 S 0.17 1.64 22.29 -107.50 -2.40 -0.76 16 28 C 0.04 0.62 7.37 37.97 0.28 0.90 16 29 O -0.34 -6.77 11.44 -35.23 -0.40 -7.17 16 30 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 31 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.04 0.83 7.96 -51.93 -0.41 0.41 16 34 H 0.08 2.10 7.20 -51.93 -0.37 1.72 16 35 H 0.08 0.97 7.69 -51.93 -0.40 0.57 16 36 H 0.09 1.23 7.83 -51.93 -0.41 0.82 16 37 H 0.40 4.35 7.45 -40.82 -0.30 4.04 16 38 H 0.15 1.45 8.00 -52.49 -0.42 1.03 16 39 H 0.18 0.20 8.06 -52.49 -0.42 -0.22 16 40 H 0.15 0.80 8.06 -52.48 -0.42 0.38 16 41 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.09 1.37 8.06 -51.93 -0.42 0.95 16 LS Contribution 366.56 15.07 5.52 5.52 Total: -1.00 -36.34 366.56 -10.58 -46.92 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -5.15 Total: 2.53 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: -2.83 Total: 0.46 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: -0.39 Total: -56.52 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: -0.32 Total: -15.82 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Atomic # 16 Polarization: 1.64 SS G_CDS: -2.40 Total: -0.76 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.34 -10.58 -46.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053995371.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.107 kcal (2) G-P(sol) polarization free energy of solvation -36.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds