Wall clock time and date at job start Sat Apr 11 2020 08:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86798 * 119.99840 * 2 1 4 4 H 1.48511 * 109.46803 * 239.99455 * 3 2 1 5 5 H 1.48492 * 109.47267 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47245 * 119.99775 * 3 2 1 7 7 C 1.38815 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00101 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00064 * 359.97438 * 7 2 1 10 10 C 1.47786 * 134.40486 * 179.97438 * 9 7 2 11 11 C 1.52878 * 85.78530 * 156.15044 * 10 9 7 12 12 C 1.47790 * 134.40309 * 0.03128 * 9 7 2 13 13 C 1.53466 * 115.59757 * 140.25768 * 11 10 9 14 14 C 1.54731 * 103.72293 * 152.75981 * 13 11 10 15 15 H 1.09005 * 110.51112 * 119.54800 * 14 13 11 16 16 N 1.46508 * 110.51092 * 242.11032 * 14 13 11 17 17 C 1.34777 * 120.00032 * 205.00237 * 16 14 13 18 18 O 1.21728 * 120.00263 * 0.02562 * 17 16 14 19 19 C 1.46409 * 119.99710 * 180.02562 * 17 16 14 20 20 C 1.35778 * 124.95813 * 179.97438 * 19 17 16 21 21 C 1.38876 * 115.18596 * 180.02562 * 20 19 17 22 22 N 1.39741 * 139.91522 * 179.97438 * 21 20 19 23 23 H 0.97006 * 125.62989 * 0.29386 * 22 21 20 24 24 C 1.36215 * 108.73368 * 180.02562 * 22 21 20 25 25 C 1.34500 * 109.29611 * 0.02562 * 24 22 21 26 26 C 1.38244 * 113.38849 * 0.02562 * 21 20 19 27 27 S 1.75622 * 124.96025 * 0.02562 * 19 17 16 28 28 C 1.54542 * 104.07794 * 0.76088 * 14 13 11 29 29 O 1.43247 * 115.85484 * 265.50472 * 11 10 9 30 30 H 0.96995 * 119.99878 * 0.02562 * 1 2 3 31 31 H 1.08999 * 113.81747 * 41.93667 * 10 9 7 32 32 H 1.08993 * 113.82410 * 270.36617 * 10 9 7 33 33 H 1.09005 * 113.81900 * 89.63645 * 12 9 7 34 34 H 1.08994 * 113.82259 * 318.06898 * 12 9 7 35 35 H 1.09007 * 110.57524 * 34.20032 * 13 11 10 36 36 H 1.09001 * 110.57681 * 271.32339 * 13 11 10 37 37 H 0.97003 * 119.99426 * 25.00601 * 16 14 13 38 38 H 1.07999 * 122.40883 * 0.04905 * 20 19 17 39 39 H 1.08002 * 125.34903 * 179.97438 * 24 22 21 40 40 H 1.08005 * 126.07563 * 179.97438 * 25 24 22 41 41 H 1.09003 * 110.32993 * 95.25478 * 28 14 13 42 42 H 1.08993 * 110.33251 * 217.47848 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3257 -2.3880 0.0016 10 6 1.7230 -3.8115 0.0019 11 6 0.3501 -4.0779 0.6196 12 6 -0.1058 -2.7557 0.0018 13 6 -0.3741 -5.3315 0.1104 14 6 -1.2801 -5.7393 1.2966 15 1 -2.3287 -5.7225 0.9997 16 7 -0.9097 -7.0672 1.7926 17 6 -1.8196 -7.8234 2.4380 18 8 -2.9494 -7.4034 2.6084 19 6 -1.4492 -9.1502 2.9340 20 6 -2.2823 -9.9939 3.5957 21 6 -1.7178 -11.2045 3.9756 22 7 -2.0652 -12.3853 4.6372 23 1 -2.9374 -12.5887 5.0099 24 6 -0.9784 -13.2060 4.6672 25 6 0.0531 -12.6002 4.0523 26 6 -0.3917 -11.3316 3.6062 27 16 0.1377 -9.8823 2.7613 28 6 -1.0010 -4.6631 2.3701 29 8 0.3111 -4.1454 2.0499 30 1 -0.4850 0.8400 -0.0004 31 1 2.5563 -4.0358 0.6678 32 1 1.8467 -4.2343 -0.9950 33 1 -0.5337 -2.8600 -0.9953 34 1 -0.7168 -2.1461 0.6675 35 1 0.3414 -6.1224 -0.1147 36 1 -0.9755 -5.0963 -0.7678 37 1 -0.0095 -7.4020 1.6564 38 1 -3.3102 -9.7418 3.8108 39 1 -0.9493 -14.1883 5.1151 40 1 1.0444 -13.0085 3.9219 41 1 -1.7456 -3.8692 2.3129 42 1 -0.9993 -5.1109 3.3638 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053995371.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:12:43 Heat of formation + Delta-G solvation = 36.683958 kcal Electronic energy + Delta-G solvation = -27001.240044 eV Core-core repulsion = 23075.070682 eV Total energy + Delta-G solvation = -3926.169362 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.12157 -41.67558 -40.42322 -37.78816 -36.08982 -35.57717 -34.12628 -32.06218 -31.76269 -30.05118 -28.89770 -27.58064 -26.63528 -25.28285 -23.91078 -22.96700 -22.09276 -21.64940 -20.88367 -20.57042 -19.42987 -18.73166 -17.94550 -17.67104 -17.06282 -16.76441 -16.46706 -16.34087 -16.11898 -15.88267 -15.40874 -15.32966 -15.17768 -14.85695 -14.56494 -14.45151 -14.37241 -13.66758 -13.34125 -13.20693 -12.96954 -12.95599 -12.85205 -12.71700 -12.62484 -12.47090 -12.32837 -12.05010 -11.93269 -11.66865 -11.30447 -11.22934 -10.90940 -10.69433 -10.65780 -10.10832 -9.13365 -8.91532 -8.61313 -7.89042 -5.21788 -0.51533 0.42911 0.96047 1.36631 1.44159 1.48651 1.54422 1.73336 1.85158 2.11452 2.27516 2.47756 2.83991 3.28436 3.40893 3.51406 3.66546 3.71666 3.83202 3.95922 4.05744 4.17624 4.23664 4.28332 4.54297 4.57844 4.65774 4.74142 4.74368 4.79708 4.87730 4.93184 4.94489 4.98659 5.06449 5.18111 5.26557 5.37911 5.51581 5.56597 5.80314 5.93424 6.10695 6.34718 6.61662 6.92325 7.00590 7.61504 8.55794 9.27814 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.032191 B = 0.002012 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.587102 B =13914.531098 C =14354.030946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.072 4.072 3 Si 0.981 3.019 4 H -0.274 1.274 5 H -0.294 1.294 6 H -0.279 1.279 7 C -0.232 4.232 8 H 0.084 0.916 9 N -0.641 5.641 10 C 0.131 3.869 11 C 0.073 3.927 12 C 0.147 3.853 13 C -0.131 4.131 14 C 0.125 3.875 15 H 0.108 0.892 16 N -0.702 5.702 17 C 0.594 3.406 18 O -0.569 6.569 19 C -0.270 4.270 20 C -0.022 4.022 21 C -0.007 4.007 22 N -0.547 5.547 23 H 0.435 0.565 24 C 0.090 3.910 25 C -0.200 4.200 26 C -0.198 4.198 27 S 0.177 5.823 28 C 0.035 3.965 29 O -0.363 6.363 30 H 0.247 0.753 31 H 0.055 0.945 32 H 0.080 0.920 33 H 0.038 0.962 34 H 0.036 0.964 35 H 0.112 0.888 36 H 0.106 0.894 37 H 0.410 0.590 38 H 0.149 0.851 39 H 0.226 0.774 40 H 0.164 0.836 41 H 0.060 0.940 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.121 -32.870 7.889 33.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.265 4.265 3 Si 0.808 3.192 4 H -0.200 1.200 5 H -0.220 1.220 6 H -0.205 1.205 7 C -0.361 4.361 8 H 0.101 0.899 9 N -0.368 5.368 10 C 0.006 3.994 11 C 0.032 3.968 12 C 0.022 3.978 13 C -0.170 4.170 14 C 0.020 3.980 15 H 0.126 0.874 16 N -0.353 5.353 17 C 0.382 3.618 18 O -0.450 6.450 19 C -0.390 4.390 20 C -0.058 4.058 21 C -0.120 4.120 22 N -0.149 5.149 23 H 0.275 0.725 24 C -0.045 4.045 25 C -0.230 4.230 26 C -0.321 4.321 27 S 0.440 5.560 28 C -0.043 4.043 29 O -0.282 6.282 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.130 0.870 36 H 0.124 0.876 37 H 0.247 0.753 38 H 0.166 0.834 39 H 0.242 0.758 40 H 0.181 0.819 41 H 0.078 0.922 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.483 -31.666 7.533 32.644 hybrid contribution -1.287 0.878 0.624 1.678 sum -3.771 -30.788 8.157 32.073 Atomic orbital electron populations 1.70009 1.06457 1.25570 1.58391 1.25663 0.96643 1.00988 1.03176 0.85122 0.77119 0.78643 0.78269 1.19956 1.22045 1.20486 1.19373 0.90823 0.83399 1.42491 0.89864 1.46253 1.03449 1.00656 1.86403 1.22746 0.94686 0.83678 0.98249 1.23419 0.97681 0.94129 0.81579 1.22577 0.87371 0.91201 0.96686 1.23007 0.99062 0.97122 0.97776 1.22276 1.01092 0.81289 0.93346 0.87391 1.45825 1.14827 1.16862 1.57769 1.17091 0.84378 0.83272 0.77033 1.90817 1.21493 1.73689 1.59008 1.23505 1.00533 0.99962 1.15029 1.19353 1.00737 0.89858 0.95896 1.17982 0.94291 0.91802 1.07878 1.42052 1.14099 1.11724 1.47017 0.72459 1.22690 0.84344 0.97549 0.99913 1.20567 1.01823 0.92392 1.08168 1.23638 0.97977 1.01758 1.08697 1.83604 1.07878 1.06651 1.57821 1.23911 0.85386 0.95390 0.99583 1.88989 1.32812 1.85675 1.20710 0.94377 0.92653 0.90269 0.94465 0.94540 0.87007 0.87552 0.75316 0.83356 0.75789 0.81856 0.92161 0.88884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.94 11.40 21.65 0.25 -59.69 16 2 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16 3 Si 0.98 47.50 29.55 68.60 2.03 49.53 16 4 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 5 H -0.29 -14.30 7.11 99.48 0.71 -13.60 16 6 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 7 C -0.23 -13.62 10.70 84.03 0.90 -12.72 16 8 H 0.08 4.64 7.83 -2.91 -0.02 4.61 16 9 N -0.64 -34.21 3.71 -741.00 -2.75 -36.96 16 10 C 0.13 5.27 8.47 86.09 0.73 6.00 16 11 C 0.07 2.76 1.28 -10.66 -0.01 2.75 16 12 C 0.15 7.18 6.99 86.10 0.60 7.78 16 13 C -0.13 -3.47 6.25 31.34 0.20 -3.27 16 14 C 0.13 3.42 3.49 46.10 0.16 3.58 16 15 H 0.11 3.00 7.55 -2.38 -0.02 2.98 16 16 N -0.70 -16.94 5.08 -441.44 -2.24 -19.18 16 17 C 0.59 16.06 7.77 86.37 0.67 16.73 16 18 O -0.57 -19.06 16.42 -4.44 -0.07 -19.14 16 19 C -0.27 -6.18 6.38 23.83 0.15 -6.03 16 20 C -0.02 -0.45 9.88 21.85 0.22 -0.24 16 21 C -0.01 -0.11 7.67 38.03 0.29 0.18 16 22 N -0.55 -4.92 6.21 -188.39 -1.17 -6.09 16 23 H 0.43 1.22 8.96 -92.70 -0.83 0.39 16 24 C 0.09 0.54 11.85 83.16 0.99 1.53 16 25 C -0.20 -2.33 10.84 22.25 0.24 -2.08 16 26 C -0.20 -3.50 7.31 23.11 0.17 -3.33 16 27 S 0.18 3.27 22.29 -56.49 -1.26 2.02 16 28 C 0.04 1.17 7.37 72.51 0.53 1.71 16 29 O -0.36 -14.74 11.44 -148.98 -1.70 -16.44 16 30 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 31 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 33 H 0.04 1.78 7.96 -2.38 -0.02 1.76 16 34 H 0.04 2.06 7.20 -2.39 -0.02 2.04 16 35 H 0.11 2.31 7.69 -2.38 -0.02 2.30 16 36 H 0.11 2.59 7.83 -2.39 -0.02 2.57 16 37 H 0.41 8.28 7.45 -92.71 -0.69 7.59 16 38 H 0.15 2.93 8.00 -2.91 -0.02 2.91 16 39 H 0.23 -0.84 8.06 -2.91 -0.02 -0.87 16 40 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 41 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.09 2.97 8.06 -2.39 -0.02 2.95 16 Total: -1.00 -82.22 366.56 -1.05 -83.27 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -0.43 Total: 13.92 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: 6.30 Total: 8.77 kcal Atomic # 7 Polarization: -116.01 SS G_CDS: -5.91 Total: -121.92 kcal Atomic # 8 Polarization: -33.80 SS G_CDS: -1.78 Total: -35.58 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 2.03 Total: 49.53 kcal Atomic # 16 Polarization: 3.27 SS G_CDS: -1.26 Total: 2.02 kcal Total: -82.22 -1.05 -83.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053995371.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.950 kcal (2) G-P(sol) polarization free energy of solvation -82.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds