Wall clock time and date at job start Sat Apr 11 2020 08:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 119.99971 * 2 1 4 4 H 1.48498 * 109.47073 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47160 * 299.99864 * 3 2 1 6 6 H 1.48501 * 109.46888 * 60.00108 * 3 2 1 7 7 C 1.38818 * 120.00115 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99946 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99917 * 359.97438 * 7 2 1 10 10 C 1.47422 * 125.64770 * 0.04470 * 9 7 2 11 11 C 1.55117 * 104.94236 * 203.96505 * 10 9 7 12 12 H 1.09000 * 110.93651 * 81.21583 * 11 10 9 13 13 O 1.42904 * 111.16416 * 205.12973 * 11 10 9 14 14 C 1.55154 * 101.48992 * 323.22342 * 11 10 9 15 15 H 1.08997 * 110.72053 * 276.83588 * 14 11 10 16 16 N 1.46499 * 110.72200 * 153.73248 * 14 11 10 17 17 C 1.34777 * 119.99665 * 157.72160 * 16 14 11 18 18 O 1.21763 * 120.00155 * 359.72136 * 17 16 14 19 19 C 1.46111 * 119.99641 * 179.72475 * 17 16 14 20 20 S 1.75813 * 125.47998 * 0.02562 * 19 17 16 21 21 C 1.70569 * 91.67883 * 180.02562 * 20 19 17 22 22 C 1.33579 * 111.17250 * 359.97438 * 21 20 19 23 23 C 1.37352 * 125.47611 * 179.71914 * 19 17 16 24 24 N 1.39885 * 123.48902 * 359.97438 * 23 19 17 25 25 C 1.36597 * 125.67160 * 309.69789 * 24 23 19 26 26 C 1.34848 * 108.19544 * 179.88684 * 25 24 23 27 27 C 1.40960 * 107.47208 * 0.36754 * 26 25 24 28 28 C 1.34841 * 107.47654 * 359.76882 * 27 26 25 29 29 C 1.47020 * 125.64728 * 180.02562 * 9 7 2 30 30 H 0.97000 * 120.00380 * 0.02562 * 1 2 3 31 31 H 1.08999 * 110.36891 * 322.93213 * 10 9 7 32 32 H 1.09011 * 110.36727 * 85.25240 * 10 9 7 33 33 H 0.96702 * 114.00453 * 292.17554 * 13 11 10 34 34 H 0.97001 * 119.99790 * 337.43873 * 16 14 11 35 35 H 1.07995 * 124.41542 * 179.97438 * 21 20 19 36 36 H 1.08002 * 122.45893 * 180.02562 * 22 21 20 37 37 H 1.08001 * 125.90344 * 0.03962 * 25 24 23 38 38 H 1.07999 * 126.25863 * 180.11877 * 26 25 24 39 39 H 1.07999 * 126.26544 * 179.74884 * 27 26 25 40 40 H 1.07999 * 125.90122 * 179.97438 * 28 27 26 41 41 H 1.08999 * 109.88117 * 59.55926 * 29 9 7 42 42 H 1.09000 * 110.01187 * 298.46418 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1415 -2.5332 -0.0009 11 6 -0.4049 -3.9354 0.6080 12 1 -0.3584 -3.9023 1.6965 13 8 -1.6577 -4.4624 0.1667 14 6 0.7784 -4.7525 0.0255 15 1 0.5483 -5.1001 -0.9816 16 7 1.1083 -5.8816 0.8988 17 6 1.7633 -6.9493 0.4013 18 8 2.0764 -6.9777 -0.7750 19 6 2.0976 -8.0727 1.2737 20 16 1.7162 -8.1835 2.9864 21 6 2.4487 -9.7196 3.1014 22 6 2.9414 -10.1087 1.9224 23 6 2.7551 -9.2147 0.8862 24 7 3.1944 -9.4464 -0.4215 25 6 2.4371 -9.3169 -1.5509 26 6 3.2094 -9.6229 -2.6131 27 6 4.4872 -9.9617 -2.1238 28 6 4.4505 -9.8454 -0.7809 29 6 1.9319 -3.7275 -0.0005 30 1 -0.4851 0.8400 -0.0004 31 1 -0.5994 -1.7591 0.6147 32 1 -0.5271 -2.4866 -1.0195 33 1 -2.4269 -3.9840 0.5052 34 1 0.8589 -5.8589 1.8359 35 1 2.5066 -10.3017 4.0092 36 1 3.4443 -11.0550 1.7881 37 1 1.3998 -9.0183 -1.5871 38 1 2.9035 -9.6143 -3.6489 39 1 5.3396 -10.2602 -2.7160 40 1 5.2720 -10.0353 -0.1061 41 1 2.5578 -3.8511 0.8832 42 1 2.5304 -3.8661 -0.9009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077479892.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:12:46 Heat of formation + Delta-G solvation = 51.276090 kcal Electronic energy + Delta-G solvation = -27872.379696 eV Core-core repulsion = 23946.843096 eV Total energy + Delta-G solvation = -3925.536600 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.52794 -39.69390 -38.15241 -37.45806 -35.13324 -34.15488 -32.04761 -31.82481 -29.81319 -28.71049 -28.21776 -26.98465 -25.12794 -24.30614 -21.91190 -21.35020 -20.70820 -20.29091 -20.10547 -19.06428 -18.80404 -17.44928 -17.00909 -16.86749 -15.96332 -15.57602 -15.06582 -15.04594 -14.72321 -14.40632 -14.04667 -13.92083 -13.73477 -13.36152 -13.33150 -12.97932 -12.93351 -12.59184 -12.38038 -12.22754 -12.01486 -11.90616 -11.55340 -11.47555 -11.32259 -11.03365 -10.87710 -10.20619 -10.05256 -9.96452 -9.77937 -9.57034 -9.36400 -9.21386 -8.87248 -8.75713 -8.27302 -7.98030 -6.95936 -5.75764 -3.18220 0.02435 0.97089 1.38125 1.71881 2.55901 2.97513 3.08386 3.13915 3.20708 3.35520 3.41698 3.44059 4.35213 4.46863 4.55541 4.69077 4.77081 5.04361 5.18503 5.27615 5.37617 5.38323 5.46611 5.55358 5.59713 5.60899 5.72589 5.78227 5.80001 6.02229 6.11493 6.35390 6.37445 6.38564 6.62972 6.82491 7.06175 7.26887 7.27375 7.45840 7.49830 7.53743 7.68035 8.04021 8.17908 8.23073 9.10463 9.70692 10.32666 11.28658 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.013820 B = 0.002898 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.544865 B = 9658.404285 C =10332.794625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.010 4.010 3 Si 0.918 3.082 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.222 4.222 8 H 0.081 0.919 9 N -0.599 5.599 10 C 0.130 3.870 11 C 0.067 3.933 12 H 0.061 0.939 13 O -0.565 6.565 14 C 0.144 3.856 15 H 0.104 0.896 16 N -0.708 5.708 17 C 0.582 3.418 18 O -0.509 6.509 19 C -0.273 4.273 20 S 0.249 5.751 21 C -0.222 4.222 22 C -0.149 4.149 23 C 0.182 3.818 24 N -0.390 5.390 25 C 0.052 3.948 26 C -0.210 4.210 27 C -0.186 4.186 28 C -0.024 4.024 29 C 0.130 3.870 30 H 0.253 0.747 31 H 0.114 0.886 32 H 0.026 0.974 33 H 0.378 0.622 34 H 0.394 0.606 35 H 0.178 0.822 36 H 0.152 0.848 37 H 0.158 0.842 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.158 0.842 41 H 0.029 0.971 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.760 -21.361 8.074 22.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.206 4.206 3 Si 0.748 3.252 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.350 4.350 8 H 0.099 0.901 9 N -0.327 5.327 10 C 0.005 3.995 11 C 0.006 3.994 12 H 0.079 0.921 13 O -0.370 6.370 14 C 0.040 3.960 15 H 0.122 0.878 16 N -0.358 5.358 17 C 0.368 3.632 18 O -0.385 6.385 19 C -0.396 4.396 20 S 0.517 5.483 21 C -0.360 4.360 22 C -0.181 4.181 23 C 0.075 3.925 24 N -0.065 5.065 25 C -0.075 4.075 26 C -0.234 4.234 27 C -0.211 4.211 28 C -0.149 4.149 29 C 0.003 3.997 30 H 0.064 0.936 31 H 0.131 0.869 32 H 0.044 0.956 33 H 0.225 0.775 34 H 0.228 0.772 35 H 0.195 0.805 36 H 0.170 0.830 37 H 0.175 0.825 38 H 0.154 0.846 39 H 0.154 0.846 40 H 0.176 0.824 41 H 0.047 0.953 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 1.508 -20.562 8.247 22.206 hybrid contribution 0.824 0.262 -0.189 0.885 sum 2.333 -20.300 8.059 21.965 Atomic orbital electron populations 1.69736 1.04943 1.24900 1.57687 1.24800 0.95785 0.97834 1.02138 0.85945 0.78714 0.83239 0.77292 1.20431 1.21608 1.21672 1.19161 0.90667 0.82071 1.43149 0.90122 1.44288 1.01458 0.99748 1.87220 1.22588 0.85556 0.91752 0.99649 1.23671 0.82638 0.96104 0.96958 0.92075 1.86412 1.15533 1.58796 1.76235 1.22068 0.94297 0.84717 0.94936 0.87810 1.45864 1.58435 1.18289 1.13212 1.16709 0.78511 0.81109 0.86917 1.90934 1.52595 1.79637 1.15376 1.24719 1.15287 1.00063 0.99540 1.83157 1.52043 1.12511 1.00638 1.25076 1.05669 1.02436 1.02844 1.19758 1.05525 1.01539 0.91281 1.16972 0.98258 0.92044 0.85266 1.40896 1.10267 1.52745 1.02567 1.21770 0.97941 1.04032 0.83774 1.20852 0.94351 1.10129 0.98046 1.20883 0.98407 1.08486 0.93289 1.21766 0.87107 1.09563 0.96485 1.21615 0.93586 0.85325 0.99142 0.93617 0.86860 0.95581 0.77491 0.77206 0.80481 0.83049 0.82478 0.84593 0.84621 0.82436 0.95262 0.94685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.10 10.09 55.49 0.56 -25.54 16 2 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 3 Si 0.92 21.77 29.55 -169.99 -5.02 16.74 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 7 C -0.22 -6.15 10.27 -15.05 -0.15 -6.30 16 8 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 9 N -0.60 -15.24 3.40 -169.93 -0.58 -15.82 16 10 C 0.13 3.06 5.63 -2.42 -0.01 3.05 16 11 C 0.07 1.23 4.06 -24.47 -0.10 1.13 16 12 H 0.06 1.03 8.00 -51.93 -0.42 0.62 16 13 O -0.56 -9.44 13.48 -35.23 -0.47 -9.91 16 14 C 0.14 2.72 3.00 -66.10 -0.20 2.52 16 15 H 0.10 2.16 7.62 -51.93 -0.40 1.77 16 16 N -0.71 -10.97 5.11 -53.51 -0.27 -11.24 16 17 C 0.58 9.40 7.72 -13.10 -0.10 9.30 16 18 O -0.51 -9.85 12.72 5.13 0.07 -9.79 16 19 C -0.27 -3.52 6.43 -36.75 -0.24 -3.75 16 20 S 0.25 2.10 22.13 -107.50 -2.38 -0.28 16 21 C -0.22 -1.57 10.90 29.10 0.32 -1.26 16 22 C -0.15 -1.34 9.96 -41.26 -0.41 -1.76 16 23 C 0.18 2.28 5.99 -84.55 -0.51 1.77 16 24 N -0.39 -5.47 2.65 -61.59 -0.16 -5.64 16 25 C 0.05 0.79 8.53 -16.63 -0.14 0.65 16 26 C -0.21 -2.99 10.86 -39.75 -0.43 -3.42 16 27 C -0.19 -2.42 10.86 -39.76 -0.43 -2.86 16 28 C -0.02 -0.30 11.24 -16.63 -0.19 -0.49 16 29 C 0.13 2.85 7.00 -3.06 -0.02 2.83 16 30 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 31 H 0.11 2.90 5.87 -51.93 -0.31 2.60 16 32 H 0.03 0.67 8.14 -51.92 -0.42 0.25 16 33 H 0.38 4.74 9.12 45.56 0.42 5.15 16 34 H 0.39 5.07 7.64 -40.82 -0.31 4.76 16 35 H 0.18 0.69 8.06 -52.49 -0.42 0.27 16 36 H 0.15 1.10 8.06 -52.49 -0.42 0.67 16 37 H 0.16 2.39 7.44 -52.49 -0.39 2.00 16 38 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 39 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 40 H 0.16 1.56 8.06 -52.49 -0.42 1.14 16 41 H 0.03 0.63 8.03 -51.93 -0.42 0.21 16 42 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 364.83 15.07 5.50 5.50 Total: -1.00 -33.69 364.83 -9.81 -43.50 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -4.33 Total: 11.45 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: -2.71 Total: 1.03 kcal Atomic # 7 Polarization: -57.78 SS G_CDS: -0.45 Total: -58.23 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -0.41 Total: -19.70 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: 2.10 SS G_CDS: -2.38 Total: -0.28 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.69 -9.81 -43.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077479892.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.774 kcal (2) G-P(sol) polarization free energy of solvation -33.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds