Wall clock time and date at job start Sat Apr 11 2020 08:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 119.99971 * 2 1 4 4 H 1.48498 * 109.47073 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47160 * 299.99864 * 3 2 1 6 6 H 1.48501 * 109.46888 * 60.00108 * 3 2 1 7 7 C 1.38818 * 120.00115 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99946 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99917 * 359.97438 * 7 2 1 10 10 C 1.47422 * 125.64770 * 0.04470 * 9 7 2 11 11 C 1.55117 * 104.94236 * 203.96505 * 10 9 7 12 12 H 1.09000 * 110.93651 * 81.21583 * 11 10 9 13 13 O 1.42904 * 111.16416 * 205.12973 * 11 10 9 14 14 C 1.55154 * 101.48992 * 323.22342 * 11 10 9 15 15 H 1.08997 * 110.72053 * 276.83588 * 14 11 10 16 16 N 1.46499 * 110.72200 * 153.73248 * 14 11 10 17 17 C 1.34777 * 119.99665 * 157.72160 * 16 14 11 18 18 O 1.21763 * 120.00155 * 359.72136 * 17 16 14 19 19 C 1.46111 * 119.99641 * 179.72475 * 17 16 14 20 20 S 1.75813 * 125.47998 * 0.02562 * 19 17 16 21 21 C 1.70569 * 91.67883 * 180.02562 * 20 19 17 22 22 C 1.33579 * 111.17250 * 359.97438 * 21 20 19 23 23 C 1.37352 * 125.47611 * 179.71914 * 19 17 16 24 24 N 1.39885 * 123.48902 * 359.97438 * 23 19 17 25 25 C 1.36597 * 125.67160 * 309.69789 * 24 23 19 26 26 C 1.34848 * 108.19544 * 179.88684 * 25 24 23 27 27 C 1.40960 * 107.47208 * 0.36754 * 26 25 24 28 28 C 1.34841 * 107.47654 * 359.76882 * 27 26 25 29 29 C 1.47020 * 125.64728 * 180.02562 * 9 7 2 30 30 H 0.97000 * 120.00380 * 0.02562 * 1 2 3 31 31 H 1.08999 * 110.36891 * 322.93213 * 10 9 7 32 32 H 1.09011 * 110.36727 * 85.25240 * 10 9 7 33 33 H 0.96702 * 114.00453 * 292.17554 * 13 11 10 34 34 H 0.97001 * 119.99790 * 337.43873 * 16 14 11 35 35 H 1.07995 * 124.41542 * 179.97438 * 21 20 19 36 36 H 1.08002 * 122.45893 * 180.02562 * 22 21 20 37 37 H 1.08001 * 125.90344 * 0.03962 * 25 24 23 38 38 H 1.07999 * 126.25863 * 180.11877 * 26 25 24 39 39 H 1.07999 * 126.26544 * 179.74884 * 27 26 25 40 40 H 1.07999 * 125.90122 * 179.97438 * 28 27 26 41 41 H 1.08999 * 109.88117 * 59.55926 * 29 9 7 42 42 H 1.09000 * 110.01187 * 298.46418 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1415 -2.5332 -0.0009 11 6 -0.4049 -3.9354 0.6080 12 1 -0.3584 -3.9023 1.6965 13 8 -1.6577 -4.4624 0.1667 14 6 0.7784 -4.7525 0.0255 15 1 0.5483 -5.1001 -0.9816 16 7 1.1083 -5.8816 0.8988 17 6 1.7633 -6.9493 0.4013 18 8 2.0764 -6.9777 -0.7750 19 6 2.0976 -8.0727 1.2737 20 16 1.7162 -8.1835 2.9864 21 6 2.4487 -9.7196 3.1014 22 6 2.9414 -10.1087 1.9224 23 6 2.7551 -9.2147 0.8862 24 7 3.1944 -9.4464 -0.4215 25 6 2.4371 -9.3169 -1.5509 26 6 3.2094 -9.6229 -2.6131 27 6 4.4872 -9.9617 -2.1238 28 6 4.4505 -9.8454 -0.7809 29 6 1.9319 -3.7275 -0.0005 30 1 -0.4851 0.8400 -0.0004 31 1 -0.5994 -1.7591 0.6147 32 1 -0.5271 -2.4866 -1.0195 33 1 -2.4269 -3.9840 0.5052 34 1 0.8589 -5.8589 1.8359 35 1 2.5066 -10.3017 4.0092 36 1 3.4443 -11.0550 1.7881 37 1 1.3998 -9.0183 -1.5871 38 1 2.9035 -9.6143 -3.6489 39 1 5.3396 -10.2602 -2.7160 40 1 5.2720 -10.0353 -0.1061 41 1 2.5578 -3.8511 0.8832 42 1 2.5304 -3.8661 -0.9009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077479892.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:12:45 Heat of formation + Delta-G solvation = 27.403651 kcal Electronic energy + Delta-G solvation = -27873.414883 eV Core-core repulsion = 23946.843096 eV Total energy + Delta-G solvation = -3926.571787 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.50897 -41.03387 -39.49507 -38.49520 -36.73341 -35.68753 -33.73649 -32.89574 -31.06471 -29.99673 -29.57647 -28.62999 -26.57958 -25.62220 -23.09682 -22.47820 -22.21219 -21.73184 -21.29374 -20.05758 -19.92140 -19.01659 -18.57735 -18.04009 -17.23590 -17.03806 -16.43892 -16.27935 -15.80852 -15.64752 -15.33588 -15.33270 -14.94612 -14.78961 -14.61021 -14.24396 -14.10103 -13.92038 -13.64397 -13.43891 -13.26236 -13.18820 -13.15104 -12.97824 -12.83381 -12.77095 -12.16132 -12.05014 -11.97225 -11.49327 -11.37626 -10.96166 -10.80441 -10.44093 -10.35720 -9.88360 -9.15890 -9.02769 -9.00959 -7.84845 -5.31459 -0.81165 0.21595 0.70235 0.95107 1.46207 1.47645 1.55121 1.57918 1.84433 1.97438 2.07806 2.15365 2.44728 3.01907 3.26881 3.52795 3.59186 3.81001 3.88530 3.97128 4.00921 4.13311 4.27332 4.32758 4.36154 4.52465 4.53038 4.65573 4.76000 4.76469 4.82781 4.92892 4.98745 5.29470 5.33949 5.34265 5.38112 5.41206 5.64360 6.03981 6.17884 6.23590 6.31065 6.53440 6.83444 6.98947 7.02549 7.65206 8.27404 9.17134 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.013820 B = 0.002898 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.544865 B = 9658.404285 C =10332.794625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.058 4.058 3 Si 0.984 3.016 4 H -0.270 1.270 5 H -0.292 1.292 6 H -0.284 1.284 7 C -0.246 4.246 8 H 0.079 0.921 9 N -0.617 5.617 10 C 0.134 3.866 11 C 0.093 3.907 12 H 0.089 0.911 13 O -0.567 6.567 14 C 0.160 3.840 15 H 0.079 0.921 16 N -0.698 5.698 17 C 0.580 3.420 18 O -0.552 6.552 19 C -0.321 4.321 20 S 0.305 5.695 21 C -0.191 4.191 22 C -0.163 4.163 23 C 0.171 3.829 24 N -0.397 5.397 25 C 0.028 3.972 26 C -0.225 4.225 27 C -0.201 4.201 28 C -0.023 4.023 29 C 0.133 3.867 30 H 0.251 0.749 31 H 0.094 0.906 32 H -0.009 1.009 33 H 0.399 0.601 34 H 0.409 0.591 35 H 0.221 0.779 36 H 0.171 0.829 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.157 0.843 40 H 0.188 0.812 41 H 0.039 0.961 42 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.488 -22.985 11.234 25.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.251 4.251 3 Si 0.811 3.189 4 H -0.195 1.195 5 H -0.219 1.219 6 H -0.210 1.210 7 C -0.375 4.375 8 H 0.097 0.903 9 N -0.345 5.345 10 C 0.008 3.992 11 C 0.032 3.968 12 H 0.107 0.893 13 O -0.375 6.375 14 C 0.054 3.946 15 H 0.097 0.903 16 N -0.350 5.350 17 C 0.368 3.632 18 O -0.432 6.432 19 C -0.443 4.443 20 S 0.573 5.427 21 C -0.330 4.330 22 C -0.193 4.193 23 C 0.063 3.937 24 N -0.071 5.071 25 C -0.100 4.100 26 C -0.249 4.249 27 C -0.225 4.225 28 C -0.149 4.149 29 C 0.007 3.993 30 H 0.061 0.939 31 H 0.112 0.888 32 H 0.009 0.991 33 H 0.249 0.751 34 H 0.246 0.754 35 H 0.237 0.763 36 H 0.189 0.811 37 H 0.160 0.840 38 H 0.159 0.841 39 H 0.175 0.825 40 H 0.205 0.795 41 H 0.056 0.944 42 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges 2.209 -22.207 11.460 25.087 hybrid contribution 0.575 0.714 -1.127 1.453 sum 2.784 -21.493 10.333 24.010 Atomic orbital electron populations 1.69948 1.06068 1.25410 1.57949 1.25619 0.96738 1.00854 1.01906 0.84941 0.77930 0.78995 0.76991 1.19486 1.21934 1.21019 1.19466 0.91014 0.83369 1.43622 0.90296 1.44531 1.02427 1.00434 1.87121 1.22416 0.84516 0.94561 0.97661 1.23269 0.83245 0.92491 0.97798 0.89300 1.86390 1.15671 1.58752 1.76638 1.21554 0.93378 0.85009 0.94683 0.90321 1.45603 1.58612 1.17260 1.13491 1.17197 0.77460 0.81678 0.86907 1.90910 1.54182 1.80567 1.17499 1.24510 1.18112 0.99512 1.02198 1.82965 1.50656 1.12821 0.96298 1.25635 1.02282 1.01508 1.03529 1.19878 1.06772 1.01907 0.90790 1.17496 0.98201 0.92759 0.85262 1.41073 1.10494 1.52420 1.03102 1.21693 0.97852 1.05485 0.84975 1.21132 0.95226 1.10214 0.98364 1.21208 0.98494 1.08904 0.93932 1.22319 0.87307 1.08220 0.97013 1.21629 0.94562 0.84883 0.98265 0.93876 0.88822 0.99064 0.75095 0.75391 0.76260 0.81126 0.83962 0.84060 0.82532 0.79488 0.94355 0.97029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.40 10.09 21.65 0.22 -54.18 16 2 C -0.06 -3.24 5.49 84.86 0.47 -2.78 16 3 Si 0.98 45.05 29.55 68.60 2.03 47.07 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 6 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 7 C -0.25 -13.90 10.27 84.03 0.86 -13.04 16 8 H 0.08 4.35 7.83 -2.91 -0.02 4.32 16 9 N -0.62 -32.34 3.40 -691.55 -2.35 -34.69 16 10 C 0.13 6.50 5.63 86.93 0.49 6.99 16 11 C 0.09 3.38 4.06 32.06 0.13 3.51 16 12 H 0.09 2.81 8.00 -2.39 -0.02 2.79 16 13 O -0.57 -18.43 13.48 -148.98 -2.01 -20.44 16 14 C 0.16 6.15 3.00 46.18 0.14 6.29 16 15 H 0.08 3.46 7.62 -2.39 -0.02 3.44 16 16 N -0.70 -21.44 5.11 -441.39 -2.26 -23.70 16 17 C 0.58 19.01 7.72 86.29 0.67 19.68 16 18 O -0.55 -22.56 12.72 -4.55 -0.06 -22.62 16 19 C -0.32 -7.93 6.43 24.11 0.15 -7.77 16 20 S 0.30 4.07 22.13 -56.49 -1.25 2.82 16 21 C -0.19 -1.79 10.90 66.76 0.73 -1.06 16 22 C -0.16 -2.40 9.96 21.18 0.21 -2.19 16 23 C 0.17 4.07 5.99 37.62 0.23 4.30 16 24 N -0.40 -11.12 2.65 -348.76 -0.92 -12.04 16 25 C 0.03 0.89 8.53 83.17 0.71 1.60 16 26 C -0.23 -6.71 10.86 22.16 0.24 -6.47 16 27 C -0.20 -5.20 10.86 22.16 0.24 -4.96 16 28 C -0.02 -0.56 11.24 83.17 0.93 0.37 16 29 C 0.13 6.02 7.00 86.73 0.61 6.63 16 30 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 31 H 0.09 4.92 5.87 -2.39 -0.01 4.91 16 32 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 33 H 0.40 9.38 9.12 -74.06 -0.68 8.70 16 34 H 0.41 9.83 7.64 -92.71 -0.71 9.12 16 35 H 0.22 0.21 8.06 -2.91 -0.02 0.19 16 36 H 0.17 1.82 8.06 -2.91 -0.02 1.79 16 37 H 0.14 4.77 7.44 -2.91 -0.02 4.75 16 38 H 0.14 3.80 8.06 -2.91 -0.02 3.78 16 39 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16 40 H 0.19 3.27 8.06 -2.91 -0.02 3.25 16 41 H 0.04 1.66 8.03 -2.39 -0.02 1.64 16 42 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 Total: -1.00 -77.34 364.83 -0.10 -77.44 By element: Atomic # 1 Polarization: 29.53 SS G_CDS: -0.30 Total: 29.22 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: 6.80 Total: 11.10 kcal Atomic # 7 Polarization: -119.29 SS G_CDS: -5.31 Total: -124.60 kcal Atomic # 8 Polarization: -40.99 SS G_CDS: -2.07 Total: -43.06 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal Atomic # 16 Polarization: 4.07 SS G_CDS: -1.25 Total: 2.82 kcal Total: -77.34 -0.10 -77.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077479892.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.848 kcal (2) G-P(sol) polarization free energy of solvation -77.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds