Wall clock time and date at job start Sat Apr 11 2020 08:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38902 * 119.48594 * 2 1 4 4 C 1.36803 * 120.30956 * 179.97438 * 3 2 1 5 5 C 1.38693 * 119.63300 * 0.02562 * 4 3 2 6 6 S 1.76251 * 134.19266 * 179.97438 * 5 4 3 7 7 N 1.55995 * 97.56382 * 180.02562 * 6 5 4 8 8 C 1.29692 * 111.74478 * 0.02562 * 7 6 5 9 9 C 1.47375 * 121.83030 * 180.02562 * 8 7 6 10 10 O 1.21616 * 119.99903 * 180.02562 * 9 8 7 11 11 N 1.34775 * 120.00046 * 0.02833 * 9 8 7 12 12 C 1.46504 * 119.99904 * 179.97438 * 11 9 8 13 13 H 1.09002 * 110.88589 * 34.29587 * 12 11 9 14 14 C 1.54909 * 111.00462 * 270.41314 * 12 11 9 15 15 N 1.47523 * 104.78433 * 204.90016 * 14 12 11 16 16 C 1.36938 * 125.63702 * 204.15649 * 15 14 12 17 17 H 1.08000 * 119.99838 * 359.97438 * 16 15 14 18 18 C 1.38810 * 119.99820 * 179.97438 * 16 15 14 19 19 N 1.31615 * 120.00351 * 0.02562 * 18 16 15 20 20 Si 1.86808 * 119.99832 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.46814 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46876 * 120.00018 * 20 18 16 23 23 H 1.48494 * 109.47043 * 239.99927 * 20 18 16 24 24 C 1.47022 * 108.71559 * 24.12363 * 15 14 12 25 25 C 1.54330 * 107.27093 * 358.93837 * 24 15 14 26 26 H 1.08996 * 110.72277 * 219.44125 * 25 24 15 27 27 O 1.42902 * 110.87096 * 96.24056 * 25 24 15 28 28 C 1.40678 * 120.65912 * 0.29655 * 5 4 3 29 29 C 1.36336 * 119.48296 * 180.02562 * 2 1 3 30 30 H 1.08996 * 109.47028 * 90.00301 * 1 2 3 31 31 H 1.09004 * 109.47147 * 210.00223 * 1 2 3 32 32 H 1.08994 * 109.46698 * 330.00041 * 1 2 3 33 33 H 1.08003 * 119.84345 * 359.97438 * 3 2 1 34 34 H 1.08004 * 120.18265 * 180.02562 * 4 3 2 35 35 H 0.96994 * 120.00442 * 359.97438 * 11 9 8 36 36 H 1.09001 * 110.36668 * 323.71805 * 14 12 11 37 37 H 1.09004 * 110.36307 * 86.03933 * 14 12 11 38 38 H 0.97003 * 120.00159 * 180.02562 * 19 18 16 39 39 H 1.08998 * 109.88478 * 239.52488 * 24 15 14 40 40 H 1.08997 * 110.01216 * 118.42984 * 24 15 14 41 41 H 0.96701 * 113.99651 * 66.38902 * 27 25 24 42 42 H 1.08004 * 120.02009 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1907 1.2091 0.0000 4 6 3.5586 1.2288 0.0005 5 6 4.2616 0.0332 0.0005 6 16 5.9737 -0.3853 0.0005 7 7 5.8060 -1.9362 -0.0002 8 6 4.5567 -2.2844 -0.0010 9 6 4.1441 -3.6992 -0.0012 10 8 2.9627 -3.9881 -0.0025 11 7 5.0759 -4.6729 0.0000 12 6 4.6657 -6.0793 0.0004 13 1 3.7497 -6.2171 -0.5741 14 6 4.4991 -6.6088 1.4466 15 7 4.7005 -8.0662 1.3395 16 6 4.2137 -9.0050 2.2095 17 1 3.6266 -8.6979 3.0624 18 6 4.4749 -10.3514 1.9952 19 7 5.1908 -10.7257 0.9562 20 14 3.8114 -11.6320 3.1825 21 1 3.0439 -10.9574 4.2599 22 1 2.9201 -12.5690 2.4525 23 1 4.9424 -12.3876 3.7782 24 6 5.5097 -8.3440 0.1439 25 6 5.8014 -6.9900 -0.5367 26 1 5.7413 -7.0825 -1.6211 27 8 7.0804 -6.4879 -0.1441 28 6 3.5821 -1.1986 -0.0063 29 6 2.1780 -1.1868 -0.0005 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3634 -0.8900 0.5139 32 1 -0.3632 0.8900 0.5138 33 1 1.6398 2.1381 -0.0004 34 1 4.0881 2.1701 0.0009 35 1 6.0181 -4.4426 0.0007 36 1 5.2518 -6.1687 2.1008 37 1 3.4978 -6.3896 1.8177 38 1 5.3730 -11.6666 0.8062 39 1 4.9551 -8.9894 -0.5373 40 1 6.4453 -8.8243 0.4300 41 1 7.8246 -7.0215 -0.4548 42 1 1.6299 -2.1174 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083697748.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:13:04 Heat of formation + Delta-G solvation = 2.031140 kcal Electronic energy + Delta-G solvation = -27447.323143 eV Core-core repulsion = 23519.651122 eV Total energy + Delta-G solvation = -3927.672021 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.76782 -39.38016 -37.98503 -37.12498 -34.83294 -34.02062 -32.86229 -31.67269 -31.03437 -28.64397 -27.48288 -27.22846 -25.84130 -24.35218 -23.22058 -21.70241 -20.62331 -20.23080 -19.94748 -18.68281 -17.79411 -17.06776 -16.87958 -16.35194 -15.58651 -15.54799 -15.25862 -14.85570 -14.66585 -14.26307 -14.18264 -13.96479 -13.87887 -13.66293 -13.13664 -12.73090 -12.60988 -12.54025 -12.29969 -12.24178 -12.06836 -11.90977 -11.37337 -11.29893 -10.96210 -10.93785 -10.85304 -10.51850 -10.47155 -10.11256 -9.94900 -9.83936 -9.80704 -9.30645 -9.22448 -8.76222 -8.65443 -8.06440 -6.87344 -5.74649 -3.07578 0.13040 0.80069 1.09046 1.44873 1.55339 3.04761 3.17704 3.40090 3.43603 3.45979 3.48447 4.05588 4.36908 4.48210 4.52870 4.61398 4.82681 4.95503 5.03223 5.14295 5.28651 5.29114 5.35231 5.36804 5.53881 5.63697 5.70425 5.72254 5.76454 5.83317 5.86804 6.02699 6.09890 6.21239 6.26658 6.52645 6.57390 6.65192 6.92160 7.33491 7.44958 7.71303 7.76809 8.08068 8.19587 8.32495 9.18113 9.78050 10.42559 11.37733 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.017010 B = 0.002559 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.707981 B =10939.888673 C =12109.409830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.087 4.087 3 C -0.089 4.089 4 C -0.071 4.071 5 C -0.206 4.206 6 S 0.381 5.619 7 N -0.485 5.485 8 C 0.096 3.904 9 C 0.584 3.416 10 O -0.528 6.528 11 N -0.685 5.685 12 C 0.137 3.863 13 H 0.107 0.893 14 C 0.132 3.868 15 N -0.600 5.600 16 C -0.223 4.223 17 H 0.080 0.920 18 C -0.010 4.010 19 N -0.926 5.926 20 Si 0.915 3.085 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.291 1.291 24 C 0.155 3.845 25 C 0.068 3.932 26 H 0.062 0.938 27 O -0.566 6.566 28 C -0.083 4.083 29 C -0.042 4.042 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.416 0.584 36 H 0.027 0.973 37 H 0.046 0.954 38 H 0.252 0.748 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.380 0.620 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.733 25.686 -5.851 26.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.089 4.089 3 C -0.112 4.112 4 C -0.093 4.093 5 C -0.327 4.327 6 S 0.540 5.460 7 N -0.311 5.311 8 C -0.092 4.092 9 C 0.364 3.636 10 O -0.404 6.404 11 N -0.336 5.336 12 C 0.032 3.968 13 H 0.125 0.875 14 C 0.004 3.996 15 N -0.327 5.327 16 C -0.351 4.351 17 H 0.098 0.902 18 C -0.206 4.206 19 N -0.575 5.575 20 Si 0.745 3.255 21 H -0.204 1.204 22 H -0.217 1.217 23 H -0.218 1.218 24 C 0.029 3.971 25 C 0.008 3.992 26 H 0.080 0.920 27 O -0.372 6.372 28 C -0.093 4.093 29 C -0.064 4.064 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.151 0.849 34 H 0.152 0.848 35 H 0.253 0.747 36 H 0.045 0.955 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.228 0.772 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -0.609 25.824 -5.537 26.418 hybrid contribution -1.103 -1.533 0.326 1.917 sum -1.712 24.291 -5.211 24.902 Atomic orbital electron populations 1.20842 0.90287 1.03310 1.02766 1.19668 0.96851 0.92562 0.99780 1.20949 0.93639 0.97958 0.98655 1.19887 0.93757 0.95197 1.00502 1.24262 1.01630 0.97760 1.08999 1.81359 1.02439 0.94830 1.67384 1.71466 1.23638 1.16673 1.19300 1.21983 0.86463 0.96083 1.04711 1.17163 0.85943 0.82828 0.77685 1.90782 1.16652 1.82397 1.50574 1.45651 1.10454 1.05576 1.71906 1.22464 0.97071 0.77701 0.99610 0.87498 1.21852 0.98797 0.86051 0.92870 1.44307 1.61009 0.99586 1.27821 1.19144 1.26546 0.85988 1.03414 0.90183 1.24795 1.00440 0.96935 0.98413 1.69921 1.43350 1.15125 1.29070 0.85991 0.78026 0.81495 0.79967 1.20441 1.21716 1.21769 1.21860 0.96783 0.89775 0.88641 1.23513 0.82830 0.95776 0.97079 0.92032 1.86274 1.15434 1.55170 1.80369 1.19572 0.95152 0.89838 1.04757 1.20732 0.90827 0.99259 0.95611 0.90793 0.90893 0.91285 0.84854 0.84834 0.74719 0.95549 0.93546 0.93771 0.92552 0.92830 0.77242 0.83281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.78 9.98 36.01 0.36 -0.42 16 2 C -0.09 -0.81 5.84 -105.06 -0.61 -1.42 16 3 C -0.09 -0.69 9.63 -39.86 -0.38 -1.07 16 4 C -0.07 -0.59 10.03 -39.93 -0.40 -0.99 16 5 C -0.21 -2.26 6.73 -38.49 -0.26 -2.52 16 6 S 0.38 3.99 23.36 -107.50 -2.51 1.48 16 7 N -0.49 -6.73 10.49 28.25 0.30 -6.43 16 8 C 0.10 1.44 6.82 -81.99 -0.56 0.88 16 9 C 0.58 10.02 7.80 -12.54 -0.10 9.93 16 10 O -0.53 -10.05 14.70 5.26 0.08 -9.97 16 11 N -0.68 -11.77 5.17 -52.81 -0.27 -12.04 16 12 C 0.14 2.63 3.25 -65.78 -0.21 2.42 16 13 H 0.11 2.11 7.63 -51.93 -0.40 1.72 16 14 C 0.13 2.97 6.93 -2.47 -0.02 2.95 16 15 N -0.60 -15.65 3.40 -169.99 -0.58 -16.23 16 16 C -0.22 -6.32 10.28 -15.06 -0.15 -6.48 16 17 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 18 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 19 N -0.93 -26.96 10.31 55.49 0.57 -26.38 16 20 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 C 0.15 3.67 5.14 -3.06 -0.02 3.66 16 25 C 0.07 1.26 4.19 -24.89 -0.10 1.16 16 26 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 27 O -0.57 -9.56 12.14 -35.23 -0.43 -9.99 16 28 C -0.08 -1.11 6.10 -105.09 -0.64 -1.75 16 29 C -0.04 -0.52 9.17 -39.45 -0.36 -0.88 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.52 8.07 -51.93 -0.42 0.10 16 32 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 33 H 0.13 0.63 8.06 -52.48 -0.42 0.20 16 34 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 35 H 0.42 6.89 7.00 -40.82 -0.29 6.60 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 39 H 0.06 1.46 7.38 -51.93 -0.38 1.08 16 40 H 0.05 1.39 7.44 -51.93 -0.39 1.00 16 41 H 0.38 4.96 9.12 45.56 0.42 5.38 16 42 H 0.15 1.97 6.64 -52.48 -0.35 1.62 16 LS Contribution 364.00 15.07 5.49 5.49 Total: -1.00 -33.17 364.00 -10.25 -43.41 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -4.31 Total: 8.28 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: -3.56 Total: 5.08 kcal Atomic # 7 Polarization: -61.10 SS G_CDS: 0.02 Total: -61.08 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -0.35 Total: -19.96 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Atomic # 16 Polarization: 3.99 SS G_CDS: -2.51 Total: 1.48 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.17 -10.25 -43.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083697748.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.446 kcal (2) G-P(sol) polarization free energy of solvation -33.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds