Wall clock time and date at job start Sat Apr 11 2020 08:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38902 * 119.48594 * 2 1 4 4 C 1.36803 * 120.30956 * 179.97438 * 3 2 1 5 5 C 1.38693 * 119.63300 * 0.02562 * 4 3 2 6 6 S 1.76251 * 134.19266 * 179.97438 * 5 4 3 7 7 N 1.55995 * 97.56382 * 180.02562 * 6 5 4 8 8 C 1.29692 * 111.74478 * 0.02562 * 7 6 5 9 9 C 1.47375 * 121.83030 * 180.02562 * 8 7 6 10 10 O 1.21616 * 119.99903 * 180.02562 * 9 8 7 11 11 N 1.34775 * 120.00046 * 0.02833 * 9 8 7 12 12 C 1.46504 * 119.99904 * 179.97438 * 11 9 8 13 13 H 1.09002 * 110.88589 * 34.29587 * 12 11 9 14 14 C 1.54909 * 111.00462 * 270.41314 * 12 11 9 15 15 N 1.47523 * 104.78433 * 204.90016 * 14 12 11 16 16 C 1.36938 * 125.63702 * 204.15649 * 15 14 12 17 17 H 1.08000 * 119.99838 * 359.97438 * 16 15 14 18 18 C 1.38810 * 119.99820 * 179.97438 * 16 15 14 19 19 N 1.31615 * 120.00351 * 0.02562 * 18 16 15 20 20 Si 1.86808 * 119.99832 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.46814 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46876 * 120.00018 * 20 18 16 23 23 H 1.48494 * 109.47043 * 239.99927 * 20 18 16 24 24 C 1.47022 * 108.71559 * 24.12363 * 15 14 12 25 25 C 1.54330 * 107.27093 * 358.93837 * 24 15 14 26 26 H 1.08996 * 110.72277 * 219.44125 * 25 24 15 27 27 O 1.42902 * 110.87096 * 96.24056 * 25 24 15 28 28 C 1.40678 * 120.65912 * 0.29655 * 5 4 3 29 29 C 1.36336 * 119.48296 * 180.02562 * 2 1 3 30 30 H 1.08996 * 109.47028 * 90.00301 * 1 2 3 31 31 H 1.09004 * 109.47147 * 210.00223 * 1 2 3 32 32 H 1.08994 * 109.46698 * 330.00041 * 1 2 3 33 33 H 1.08003 * 119.84345 * 359.97438 * 3 2 1 34 34 H 1.08004 * 120.18265 * 180.02562 * 4 3 2 35 35 H 0.96994 * 120.00442 * 359.97438 * 11 9 8 36 36 H 1.09001 * 110.36668 * 323.71805 * 14 12 11 37 37 H 1.09004 * 110.36307 * 86.03933 * 14 12 11 38 38 H 0.97003 * 120.00159 * 180.02562 * 19 18 16 39 39 H 1.08998 * 109.88478 * 239.52488 * 24 15 14 40 40 H 1.08997 * 110.01216 * 118.42984 * 24 15 14 41 41 H 0.96701 * 113.99651 * 66.38902 * 27 25 24 42 42 H 1.08004 * 120.02009 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1907 1.2091 0.0000 4 6 3.5586 1.2288 0.0005 5 6 4.2616 0.0332 0.0005 6 16 5.9737 -0.3853 0.0005 7 7 5.8060 -1.9362 -0.0002 8 6 4.5567 -2.2844 -0.0010 9 6 4.1441 -3.6992 -0.0012 10 8 2.9627 -3.9881 -0.0025 11 7 5.0759 -4.6729 0.0000 12 6 4.6657 -6.0793 0.0004 13 1 3.7497 -6.2171 -0.5741 14 6 4.4991 -6.6088 1.4466 15 7 4.7005 -8.0662 1.3395 16 6 4.2137 -9.0050 2.2095 17 1 3.6266 -8.6979 3.0624 18 6 4.4749 -10.3514 1.9952 19 7 5.1908 -10.7257 0.9562 20 14 3.8114 -11.6320 3.1825 21 1 3.0439 -10.9574 4.2599 22 1 2.9201 -12.5690 2.4525 23 1 4.9424 -12.3876 3.7782 24 6 5.5097 -8.3440 0.1439 25 6 5.8014 -6.9900 -0.5367 26 1 5.7413 -7.0825 -1.6211 27 8 7.0804 -6.4879 -0.1441 28 6 3.5821 -1.1986 -0.0063 29 6 2.1780 -1.1868 -0.0005 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3634 -0.8900 0.5139 32 1 -0.3632 0.8900 0.5138 33 1 1.6398 2.1381 -0.0004 34 1 4.0881 2.1701 0.0009 35 1 6.0181 -4.4426 0.0007 36 1 5.2518 -6.1687 2.1008 37 1 3.4978 -6.3896 1.8177 38 1 5.3730 -11.6666 0.8062 39 1 4.9551 -8.9894 -0.5373 40 1 6.4453 -8.8243 0.4300 41 1 7.8246 -7.0215 -0.4548 42 1 1.6299 -2.1174 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083697748.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:13:03 Heat of formation + Delta-G solvation = -22.261626 kcal Electronic energy + Delta-G solvation = -27448.376557 eV Core-core repulsion = 23519.651122 eV Total energy + Delta-G solvation = -3928.725435 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.80147 -40.61909 -39.41834 -38.15560 -36.51420 -35.55957 -33.72045 -33.46385 -31.85157 -30.44945 -29.09887 -27.98760 -27.25064 -26.09989 -24.08945 -22.71073 -22.27245 -21.68811 -21.37045 -19.65299 -19.25958 -18.56953 -18.36587 -17.33634 -16.91645 -16.68105 -16.60488 -16.37574 -15.84758 -15.70536 -15.31904 -15.17819 -14.88756 -14.77966 -14.51861 -14.44415 -14.28251 -13.98493 -13.23094 -13.15020 -13.00986 -12.86558 -12.79860 -12.79359 -12.59936 -12.39734 -12.32079 -12.12089 -11.98640 -11.90429 -11.74250 -11.13214 -10.91556 -10.79935 -10.77804 -10.24086 -9.96502 -8.98827 -8.87864 -7.90844 -5.27194 -0.80887 0.00791 0.27256 0.54692 0.61117 1.44411 1.45415 1.56092 1.85217 1.92514 2.46567 2.58391 3.08537 3.19011 3.28202 3.47270 3.64092 3.76093 3.85607 3.89064 3.94697 4.19456 4.21693 4.35009 4.37459 4.42769 4.59815 4.71796 4.76073 4.80061 4.86687 4.91572 4.99671 5.13650 5.19092 5.28008 5.30690 5.36703 5.43531 5.57042 5.61934 5.84840 6.11267 6.39067 6.80784 6.99717 7.03985 7.67091 8.31330 9.19447 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.017010 B = 0.002559 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.707981 B =10939.888673 C =12109.409830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.080 4.080 3 C -0.081 4.081 4 C -0.064 4.064 5 C -0.219 4.219 6 S 0.447 5.553 7 N -0.508 5.508 8 C 0.066 3.934 9 C 0.582 3.418 10 O -0.556 6.556 11 N -0.680 5.680 12 C 0.150 3.850 13 H 0.101 0.899 14 C 0.134 3.866 15 N -0.620 5.620 16 C -0.247 4.247 17 H 0.077 0.923 18 C -0.061 4.061 19 N -0.948 5.948 20 Si 0.982 3.018 21 H -0.270 1.270 22 H -0.288 1.288 23 H -0.289 1.289 24 C 0.162 3.838 25 C 0.091 3.909 26 H 0.094 0.906 27 O -0.567 6.567 28 C -0.107 4.107 29 C -0.076 4.076 30 H 0.084 0.916 31 H 0.061 0.939 32 H 0.094 0.906 33 H 0.175 0.825 34 H 0.172 0.828 35 H 0.420 0.580 36 H 0.020 0.980 37 H 0.033 0.967 38 H 0.250 0.750 39 H 0.029 0.971 40 H 0.028 0.972 41 H 0.399 0.601 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.676 29.155 -6.073 29.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.081 4.081 3 C -0.104 4.104 4 C -0.085 4.085 5 C -0.340 4.340 6 S 0.608 5.392 7 N -0.336 5.336 8 C -0.121 4.121 9 C 0.364 3.636 10 O -0.433 6.433 11 N -0.331 5.331 12 C 0.043 3.957 13 H 0.119 0.881 14 C 0.007 3.993 15 N -0.347 5.347 16 C -0.375 4.375 17 H 0.095 0.905 18 C -0.254 4.254 19 N -0.597 5.597 20 Si 0.810 3.190 21 H -0.194 1.194 22 H -0.215 1.215 23 H -0.215 1.215 24 C 0.037 3.963 25 C 0.031 3.969 26 H 0.111 0.889 27 O -0.375 6.375 28 C -0.117 4.117 29 C -0.099 4.099 30 H 0.102 0.898 31 H 0.080 0.920 32 H 0.113 0.887 33 H 0.192 0.808 34 H 0.190 0.810 35 H 0.258 0.742 36 H 0.038 0.962 37 H 0.052 0.948 38 H 0.059 0.941 39 H 0.047 0.953 40 H 0.046 0.954 41 H 0.250 0.750 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.529 29.327 -5.766 29.893 hybrid contribution -1.099 -2.425 0.415 2.695 sum -1.628 26.902 -5.351 27.477 Atomic orbital electron populations 1.20920 0.88641 1.04065 1.03616 1.20024 0.98150 0.92252 0.97701 1.21429 0.93702 0.98640 0.96646 1.20433 0.94187 0.95532 0.98391 1.24539 1.01811 0.97930 1.09722 1.80975 1.01525 0.91996 1.64737 1.71165 1.23571 1.19739 1.19150 1.21648 0.87366 0.94957 1.08086 1.17562 0.85449 0.83980 0.76587 1.90756 1.17747 1.83206 1.51634 1.45496 1.10731 1.04583 1.72337 1.22098 0.97346 0.79188 0.97029 0.88146 1.21856 0.97701 0.84649 0.95120 1.44579 1.61290 1.00682 1.28169 1.19453 1.26947 0.87058 1.04067 0.90494 1.25632 1.00875 0.98687 1.00194 1.70114 1.44031 1.15219 1.30307 0.84967 0.77339 0.78669 0.78070 1.19429 1.21468 1.21541 1.21705 0.94688 0.92289 0.87667 1.23180 0.83400 0.92345 0.98023 0.88869 1.86244 1.15351 1.55255 1.80686 1.19656 0.95570 0.90357 1.06102 1.20696 0.90750 0.99714 0.98714 0.89785 0.91956 0.88728 0.80753 0.81025 0.74180 0.96231 0.94820 0.94056 0.95284 0.95412 0.75034 0.85748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.35 9.98 71.24 0.71 -0.64 16 2 C -0.08 -1.35 5.84 -20.15 -0.12 -1.47 16 3 C -0.08 -0.93 9.63 22.09 0.21 -0.72 16 4 C -0.06 -0.81 10.03 22.04 0.22 -0.59 16 5 C -0.22 -4.36 6.73 22.98 0.15 -4.20 16 6 S 0.45 8.47 23.36 -56.49 -1.32 7.15 16 7 N -0.51 -13.85 10.49 -64.55 -0.68 -14.53 16 8 C 0.07 2.03 6.82 43.85 0.30 2.33 16 9 C 0.58 20.91 7.80 86.65 0.68 21.58 16 10 O -0.56 -22.53 14.70 -4.08 -0.06 -22.59 16 11 N -0.68 -23.94 5.17 -439.25 -2.27 -26.21 16 12 C 0.15 5.92 3.25 46.38 0.15 6.07 16 13 H 0.10 4.13 7.63 -2.39 -0.02 4.11 16 14 C 0.13 6.28 6.93 86.84 0.60 6.88 16 15 N -0.62 -33.61 3.40 -691.73 -2.35 -35.96 16 16 C -0.25 -14.45 10.28 84.03 0.86 -13.59 16 17 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 18 C -0.06 -3.51 5.49 84.86 0.47 -3.05 16 19 N -0.95 -56.63 10.31 21.65 0.22 -56.40 16 20 Si 0.98 46.67 29.55 68.60 2.03 48.70 16 21 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 22 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 23 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 24 C 0.16 7.94 5.14 86.73 0.45 8.39 16 25 C 0.09 3.37 4.19 31.79 0.13 3.51 16 26 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 27 O -0.57 -18.69 12.14 -148.98 -1.81 -20.50 16 28 C -0.11 -2.87 6.10 -20.17 -0.12 -3.00 16 29 C -0.08 -1.91 9.17 22.36 0.21 -1.71 16 30 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.06 0.87 8.07 -2.38 -0.02 0.85 16 32 H 0.09 0.63 8.08 -2.39 -0.02 0.61 16 33 H 0.18 0.59 8.06 -2.91 -0.02 0.57 16 34 H 0.17 0.85 8.06 -2.91 -0.02 0.82 16 35 H 0.42 13.98 7.00 -92.71 -0.65 13.33 16 36 H 0.02 0.95 8.14 -2.39 -0.02 0.94 16 37 H 0.03 1.64 8.14 -2.38 -0.02 1.62 16 38 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 39 H 0.03 1.57 7.38 -2.39 -0.02 1.55 16 40 H 0.03 1.49 7.44 -2.39 -0.02 1.47 16 41 H 0.40 9.91 9.12 -74.06 -0.68 9.23 16 42 H 0.12 3.63 6.64 -2.91 -0.02 3.61 16 Total: -1.00 -75.74 364.00 -1.57 -77.31 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: -0.23 Total: 23.23 kcal Atomic # 6 Polarization: 14.91 SS G_CDS: 4.90 Total: 19.81 kcal Atomic # 7 Polarization: -128.03 SS G_CDS: -5.07 Total: -133.11 kcal Atomic # 8 Polarization: -41.22 SS G_CDS: -1.87 Total: -43.09 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Atomic # 16 Polarization: 8.47 SS G_CDS: -1.32 Total: 7.15 kcal Total: -75.74 -1.57 -77.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083697748.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.048 kcal (2) G-P(sol) polarization free energy of solvation -75.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds