Wall clock time and date at job start Sat Apr 11 2020 08:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48500 * 109.46851 * 239.99999 * 3 2 1 5 5 H 1.48493 * 109.46893 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46866 * 120.00396 * 3 2 1 7 7 C 1.38815 * 119.99867 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00127 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99868 * 359.97438 * 7 2 1 10 10 C 1.46508 * 120.00076 * 179.97438 * 9 7 2 11 11 H 1.09005 * 112.84362 * 336.19668 * 10 9 7 12 12 C 1.53957 * 113.66557 * 107.43902 * 10 9 7 13 13 C 1.53779 * 87.01561 * 139.93473 * 12 10 9 14 14 H 1.08997 * 113.61221 * 89.23089 * 13 12 10 15 15 C 1.52998 * 113.61390 * 220.04514 * 13 12 10 16 16 N 1.46495 * 109.47584 * 274.14014 * 15 13 12 17 17 C 1.34779 * 120.00204 * 180.02562 * 16 15 13 18 18 O 1.21486 * 120.00153 * 359.97438 * 17 16 15 19 19 C 1.48352 * 119.99625 * 180.02562 * 17 16 15 20 20 C 1.41705 * 126.80764 * 179.97438 * 19 17 16 21 21 C 1.37152 * 103.79562 * 179.73814 * 20 19 17 22 22 C 1.47029 * 126.85777 * 180.02562 * 21 20 19 23 23 C 1.36199 * 125.33574 * 179.97438 * 22 21 20 24 24 C 1.37714 * 114.44295 * 180.02562 * 23 22 21 25 25 C 1.33732 * 115.19166 * 0.02562 * 24 23 22 26 26 S 1.75816 * 109.96387 * 359.73346 * 25 24 23 27 27 O 1.34568 * 106.28455 * 359.97438 * 21 20 19 28 28 N 1.20870 * 111.69761 * 0.02562 * 27 21 20 29 29 C 1.53779 * 113.61513 * 205.00225 * 10 9 7 30 30 H 0.97000 * 119.99794 * 359.97438 * 1 2 3 31 31 H 0.96999 * 120.00529 * 359.97438 * 9 7 2 32 32 H 1.08998 * 113.60946 * 25.41506 * 12 10 9 33 33 H 1.08998 * 113.66280 * 254.46356 * 12 10 9 34 34 H 1.09007 * 109.47286 * 154.13714 * 15 13 12 35 35 H 1.09000 * 109.46955 * 34.14506 * 15 13 12 36 36 H 0.97002 * 119.99929 * 359.97438 * 16 15 13 37 37 H 1.07998 * 128.10172 * 359.70248 * 20 19 17 38 38 H 1.08005 * 122.78092 * 0.02562 * 23 22 21 39 39 H 1.08003 * 122.40288 * 179.97438 * 24 23 22 40 40 H 1.08002 * 125.01611 * 179.97438 * 25 24 23 41 41 H 1.08997 * 113.61173 * 105.47172 * 29 10 9 42 42 H 1.08994 * 113.69039 * 334.57564 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0017 11 1 3.0653 -3.5637 -0.4078 12 6 2.0020 -4.4040 1.3433 13 6 1.8483 -5.6978 0.5266 14 1 2.7979 -6.1647 0.2654 15 6 0.8457 -6.6857 1.1264 16 7 1.5194 -7.5198 2.1246 17 6 0.8283 -8.4682 2.7876 18 8 -0.3534 -8.6311 2.5577 19 6 1.5105 -9.3125 3.7988 20 6 0.9279 -10.3444 4.5758 21 6 1.9697 -10.8075 5.3383 22 6 1.9222 -11.8903 6.3319 23 6 2.9785 -12.3262 7.0729 24 6 2.6817 -13.3562 7.9375 25 6 1.4096 -13.7683 7.9165 26 16 0.4911 -12.8218 6.7539 27 8 3.0441 -10.0738 4.9947 28 7 2.7741 -9.2559 4.1467 29 6 1.2596 -4.8286 -0.5971 30 1 -0.4850 0.8401 0.0004 31 1 0.3556 -2.3881 0.0002 32 1 1.1251 -4.1590 1.9426 33 1 2.9313 -4.3536 1.9107 34 1 0.4424 -7.3190 0.3361 35 1 0.0332 -6.1356 1.6011 36 1 2.4630 -7.3901 2.3079 37 1 -0.0966 -10.6858 4.5695 38 1 3.9672 -11.8994 6.9895 39 1 3.4232 -13.7999 8.5854 40 1 1.0053 -14.5624 8.5266 41 1 1.5904 -5.1205 -1.5938 42 1 0.1792 -4.7012 -0.5301 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086159944.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:13:06 Heat of formation + Delta-G solvation = 72.827941 kcal Electronic energy + Delta-G solvation = -25661.933662 eV Core-core repulsion = 21737.331621 eV Total energy + Delta-G solvation = -3924.602042 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -46.24175 -41.02944 -39.82875 -38.70173 -36.21376 -35.36531 -35.06801 -33.91912 -32.20318 -29.74235 -29.10493 -26.49010 -26.36370 -25.68586 -25.02914 -23.96906 -22.51003 -21.87883 -20.80621 -20.19908 -19.41813 -19.04477 -19.02856 -18.06679 -17.71539 -17.15611 -16.67927 -16.59620 -16.33707 -16.06705 -15.62578 -15.22473 -15.07362 -14.82896 -14.52683 -14.38360 -14.20103 -13.59269 -13.47778 -13.39471 -13.26134 -13.06280 -12.95500 -12.70232 -12.65395 -12.26746 -12.12061 -11.83180 -11.80504 -11.76153 -11.59193 -11.44902 -11.39350 -11.09289 -10.82025 -10.29911 -9.52643 -9.35735 -8.98654 -7.95007 -5.23511 -0.75370 -0.01703 0.28357 0.80013 0.93552 1.46753 1.49789 1.55926 1.68486 1.81696 1.89664 1.92104 2.56318 2.68502 3.22045 3.36699 3.64441 3.68354 3.68938 3.85870 3.96323 4.02652 4.21593 4.22539 4.32129 4.37773 4.47729 4.50447 4.60291 4.63879 4.68403 4.92399 4.95960 5.00337 5.06099 5.12024 5.22883 5.26470 5.37257 5.42609 5.50642 5.69004 6.16851 6.27069 6.72701 6.85791 7.32728 8.10806 8.32836 9.28148 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.025483 B = 0.001522 C = 0.001494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.501337 B =18393.824082 C =18738.535670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.078 4.078 3 Si 0.974 3.026 4 H -0.276 1.276 5 H -0.297 1.297 6 H -0.279 1.279 7 C -0.246 4.246 8 H 0.078 0.922 9 N -0.729 5.729 10 C 0.144 3.856 11 H 0.081 0.919 12 C -0.156 4.156 13 C -0.098 4.098 14 H 0.119 0.881 15 C 0.136 3.864 16 N -0.697 5.697 17 C 0.595 3.405 18 O -0.555 6.555 19 C -0.030 4.030 20 C -0.183 4.183 21 C 0.060 3.940 22 C -0.182 4.182 23 C -0.085 4.085 24 C -0.147 4.147 25 C -0.189 4.189 26 S 0.167 5.833 27 O 0.140 5.860 28 N -0.336 5.336 29 C -0.132 4.132 30 H 0.250 0.750 31 H 0.372 0.628 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.057 0.943 36 H 0.416 0.584 37 H 0.191 0.809 38 H 0.162 0.838 39 H 0.174 0.826 40 H 0.200 0.800 41 H 0.081 0.919 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.658 -34.446 16.538 38.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.270 4.270 3 Si 0.803 3.197 4 H -0.202 1.202 5 H -0.223 1.223 6 H -0.205 1.205 7 C -0.378 4.378 8 H 0.096 0.904 9 N -0.366 5.366 10 C 0.034 3.966 11 H 0.099 0.901 12 C -0.197 4.197 13 C -0.117 4.117 14 H 0.137 0.863 15 C 0.013 3.987 16 N -0.348 5.348 17 C 0.379 3.621 18 O -0.432 6.432 19 C -0.187 4.187 20 C -0.207 4.207 21 C -0.005 4.005 22 C -0.300 4.300 23 C -0.119 4.119 24 C -0.176 4.176 25 C -0.326 4.326 26 S 0.432 5.568 27 O 0.062 5.938 28 N -0.035 5.035 29 C -0.172 4.172 30 H 0.059 0.941 31 H 0.204 0.796 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.076 0.924 36 H 0.253 0.747 37 H 0.208 0.792 38 H 0.180 0.820 39 H 0.191 0.809 40 H 0.217 0.783 41 H 0.100 0.900 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.409 -33.557 15.396 37.314 hybrid contribution 0.843 1.071 0.570 1.477 sum 6.252 -32.486 15.966 36.734 Atomic orbital electron populations 1.69821 1.06687 1.26090 1.59568 1.25596 0.96372 1.01224 1.03805 0.85205 0.77171 0.79146 0.78208 1.20193 1.22328 1.20493 1.19706 0.91611 0.85444 1.41036 0.90375 1.42610 1.05357 1.01166 1.87516 1.21977 0.95702 0.83955 0.94967 0.90131 1.23783 1.00995 0.96188 0.98714 1.22484 0.99396 0.92953 0.96882 0.86275 1.21440 0.95088 0.91944 0.90229 1.45836 1.14550 1.34426 1.40034 1.17042 0.85505 0.79736 0.79834 1.90793 1.15776 1.70185 1.66443 1.23192 0.91238 1.01512 1.02721 1.22730 1.02148 0.97908 0.97902 1.21484 0.85734 0.95254 0.98006 1.21874 1.00751 1.02726 1.04608 1.21096 0.99623 0.96717 0.94461 1.20343 0.97449 0.98176 1.01592 1.26435 0.97496 1.05237 1.03390 1.84464 1.08759 1.27716 1.35859 1.84882 1.33985 1.34295 1.40673 1.74150 1.16193 1.08904 1.04259 1.23303 1.00116 0.95442 0.98319 0.94096 0.79581 0.92450 0.91738 0.90366 0.92441 0.74748 0.79160 0.82047 0.80856 0.78325 0.90010 0.91067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.37 13.06 21.65 0.28 -60.09 16 2 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 3 Si 0.97 46.52 29.55 68.60 2.03 48.55 16 4 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 5 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 6 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 7 C -0.25 -13.77 9.97 84.03 0.84 -12.93 16 8 H 0.08 4.15 7.83 -2.92 -0.02 4.12 16 9 N -0.73 -37.08 5.40 -320.15 -1.73 -38.81 16 10 C 0.14 5.49 4.48 45.58 0.20 5.70 16 11 H 0.08 2.99 8.10 -2.38 -0.02 2.97 16 12 C -0.16 -5.13 7.45 31.18 0.23 -4.89 16 13 C -0.10 -2.48 3.75 -10.27 -0.04 -2.52 16 14 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 15 C 0.14 3.50 5.50 86.38 0.47 3.97 16 16 N -0.70 -17.01 5.55 -465.49 -2.58 -19.60 16 17 C 0.59 16.54 7.85 86.94 0.68 17.23 16 18 O -0.55 -18.74 16.94 -3.67 -0.06 -18.80 16 19 C -0.03 -0.72 7.17 42.79 0.31 -0.41 16 20 C -0.18 -3.73 10.77 22.87 0.25 -3.48 16 21 C 0.06 1.05 7.28 24.32 0.18 1.23 16 22 C -0.18 -2.39 6.45 24.10 0.16 -2.23 16 23 C -0.09 -0.79 10.17 21.67 0.22 -0.57 16 24 C -0.15 -0.82 10.15 21.12 0.21 -0.60 16 25 C -0.19 -0.97 11.21 66.80 0.75 -0.22 16 26 S 0.17 1.62 23.11 -56.49 -1.31 0.31 16 27 O 0.14 2.72 11.21 66.58 0.75 3.47 16 28 N -0.34 -7.57 11.81 -48.87 -0.58 -8.15 16 29 C -0.13 -4.04 7.40 31.12 0.23 -3.81 16 30 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 31 H 0.37 20.50 7.93 -92.71 -0.73 19.76 16 32 H 0.06 2.15 7.92 -2.39 -0.02 2.13 16 33 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.08 1.94 8.14 -2.38 -0.02 1.93 16 35 H 0.06 1.72 7.87 -2.39 -0.02 1.70 16 36 H 0.42 8.71 8.23 -92.71 -0.76 7.95 16 37 H 0.19 3.40 8.06 -2.91 -0.02 3.38 16 38 H 0.16 1.07 8.06 -2.91 -0.02 1.04 16 39 H 0.17 0.08 8.06 -2.91 -0.02 0.06 16 40 H 0.20 -0.12 8.06 -2.91 -0.02 -0.14 16 41 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.07 2.35 8.08 -2.39 -0.02 2.33 16 Total: -1.00 -71.79 382.11 1.54 -70.25 By element: Atomic # 1 Polarization: 30.90 SS G_CDS: -0.42 Total: 30.48 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: 5.16 Total: -7.62 kcal Atomic # 7 Polarization: -122.04 SS G_CDS: -4.61 Total: -126.65 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: 0.68 Total: -15.33 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -1.31 Total: 0.31 kcal Total: -71.79 1.54 -70.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086159944.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.083 kcal (2) G-P(sol) polarization free energy of solvation -71.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds