Wall clock time and date at job start Sat Apr 11 2020 08:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 120.00184 * 2 1 4 4 H 1.48500 * 109.46651 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46828 * 299.99869 * 3 2 1 6 6 H 1.48497 * 109.47433 * 60.00037 * 3 2 1 7 7 C 1.38815 * 119.99483 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99757 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99959 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99708 * 179.97438 * 9 7 2 11 11 H 1.08996 * 112.84606 * 336.18871 * 10 9 7 12 12 C 1.53775 * 113.61531 * 107.50072 * 10 9 7 13 13 C 1.53779 * 87.08045 * 139.98093 * 12 10 9 14 14 H 1.08995 * 113.69231 * 89.12767 * 13 12 10 15 15 C 1.53004 * 113.61498 * 220.01756 * 13 12 10 16 16 N 1.46502 * 109.47200 * 272.50222 * 15 13 12 17 17 C 1.34769 * 120.00019 * 180.02562 * 16 15 13 18 18 O 1.21723 * 120.00176 * 359.97438 * 17 16 15 19 19 C 1.46439 * 120.00100 * 179.97438 * 17 16 15 20 20 C 1.36857 * 126.11473 * 179.97438 * 19 17 16 21 21 N 1.30660 * 114.05149 * 179.97438 * 20 19 17 22 22 C 1.30438 * 117.26904 * 0.02562 * 21 20 19 23 23 C 1.47628 * 124.75418 * 179.97438 * 22 21 20 24 24 C 1.46921 * 127.16616 * 359.67904 * 23 22 21 25 25 C 1.34256 * 106.00054 * 179.82968 * 24 23 22 26 26 O 1.34183 * 109.08963 * 0.44158 * 25 24 23 27 27 C 1.33915 * 110.83746 * 359.70517 * 26 25 24 28 28 S 1.70923 * 110.48739 * 359.72169 * 22 21 20 29 29 C 1.53779 * 87.08153 * 334.56518 * 13 12 10 30 30 H 0.97000 * 119.99481 * 359.97438 * 1 2 3 31 31 H 0.97000 * 120.00175 * 359.97438 * 9 7 2 32 32 H 1.09007 * 113.61519 * 254.52700 * 12 10 9 33 33 H 1.08996 * 113.61809 * 25.43059 * 12 10 9 34 34 H 1.09006 * 109.46988 * 32.49484 * 15 13 12 35 35 H 1.08990 * 109.47387 * 152.49751 * 15 13 12 36 36 H 0.97007 * 120.00089 * 359.97438 * 16 15 13 37 37 H 1.07998 * 122.97078 * 0.03577 * 20 19 17 38 38 H 1.08007 * 127.00117 * 359.97438 * 24 23 22 39 39 H 1.08003 * 125.45461 * 180.14264 * 25 24 23 40 40 H 1.08003 * 125.79627 * 180.02562 * 27 26 25 41 41 H 1.09003 * 113.61486 * 270.88670 * 29 13 12 42 42 H 1.08993 * 113.69047 * 139.99324 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3461 -0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0005 11 1 3.0653 -3.5639 -0.4050 12 6 1.9989 -4.4022 1.3443 13 6 1.8477 -5.6976 0.5295 14 1 2.7975 -6.1647 0.2692 15 6 0.8446 -6.6852 1.1290 16 7 1.5257 -7.5432 2.1018 17 6 0.8357 -8.4956 2.7599 18 8 -0.3536 -8.6426 2.5464 19 6 1.5167 -9.3535 3.7317 20 6 0.9412 -10.3540 4.4672 21 7 1.7703 -10.9726 5.2654 22 6 3.0116 -10.5721 5.2647 23 6 4.0833 -11.1513 6.0986 24 6 3.9598 -12.2516 7.0643 25 6 5.1873 -12.4340 7.5765 26 8 6.0300 -11.5488 7.0226 27 6 5.3915 -10.7730 6.1372 28 16 3.2250 -9.2872 4.1578 29 6 1.2598 -4.8288 -0.5949 30 1 -0.4849 0.8401 0.0004 31 1 0.3554 -2.3880 0.0005 32 1 2.9271 -4.3503 1.9135 33 1 1.1207 -4.1570 1.9415 34 1 0.0459 -6.1349 1.6266 35 1 0.4217 -7.3006 0.3351 36 1 2.4736 -7.4263 2.2716 37 1 -0.1054 -10.6101 4.3935 38 1 3.0643 -12.8031 7.3103 39 1 5.4530 -13.1717 8.3193 40 1 5.8379 -9.9821 5.5528 41 1 0.1795 -4.7002 -0.5279 42 1 1.5903 -5.1203 -1.5918 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086218095.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:13:12 Heat of formation + Delta-G solvation = 56.632196 kcal Electronic energy + Delta-G solvation = -25622.605019 eV Core-core repulsion = 21697.300677 eV Total energy + Delta-G solvation = -3925.304342 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.98730 -40.37985 -39.44332 -38.40382 -34.81843 -34.00445 -33.34016 -31.19795 -30.44716 -29.88304 -27.64525 -26.16576 -25.13085 -23.96478 -22.80445 -21.93468 -21.68079 -21.14161 -19.94006 -19.36128 -18.80214 -17.71337 -17.11895 -16.94652 -16.61019 -16.15668 -15.72506 -15.55314 -15.15124 -14.85681 -14.68129 -14.48468 -14.10453 -13.79657 -13.58848 -13.39898 -13.33286 -12.97480 -12.87792 -12.07699 -11.93461 -11.86117 -11.45544 -11.27795 -10.90025 -10.87303 -10.62400 -10.48410 -10.27722 -10.14437 -10.00105 -9.92413 -9.86655 -9.61672 -9.54234 -9.19524 -8.90048 -8.75221 -6.98821 -5.80620 -3.09590 -0.41255 0.63799 1.08385 1.17705 1.72367 2.42127 2.47391 2.90966 2.97001 3.40749 3.46206 3.47521 3.48710 4.08545 4.41290 4.48633 4.55978 4.60307 4.81965 4.90530 4.95813 5.00985 5.17517 5.19079 5.39042 5.43368 5.45145 5.67544 5.75756 5.77175 5.78786 5.88377 6.05776 6.13461 6.25741 6.31017 6.36661 6.44400 6.55005 6.77940 7.07266 7.13790 7.26812 7.67284 7.91896 8.37849 9.49039 10.07122 10.41219 11.41748 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.016530 B = 0.001768 C = 0.001648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.456807 B =15834.630264 C =16983.709976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.013 4.013 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.713 5.713 10 C 0.166 3.834 11 H 0.076 0.924 12 C -0.162 4.162 13 C -0.129 4.129 14 H 0.089 0.911 15 C 0.132 3.868 16 N -0.718 5.718 17 C 0.594 3.406 18 O -0.526 6.526 19 C -0.298 4.298 20 C 0.130 3.870 21 N -0.473 5.473 22 C 0.125 3.875 23 C -0.138 4.138 24 C -0.169 4.169 25 C -0.035 4.035 26 O -0.170 6.170 27 C 0.013 3.987 28 S 0.186 5.814 29 C -0.142 4.142 30 H 0.255 0.745 31 H 0.385 0.615 32 H 0.054 0.946 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.397 0.603 37 H 0.193 0.807 38 H 0.161 0.839 39 H 0.211 0.789 40 H 0.212 0.788 41 H 0.081 0.919 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.650 -27.465 12.605 32.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.376 4.376 8 H 0.090 0.910 9 N -0.350 5.350 10 C 0.054 3.946 11 H 0.094 0.906 12 C -0.203 4.203 13 C -0.148 4.148 14 H 0.107 0.893 15 C 0.009 3.991 16 N -0.369 5.369 17 C 0.378 3.622 18 O -0.404 6.404 19 C -0.422 4.422 20 C -0.030 4.030 21 N -0.187 5.187 22 C -0.145 4.145 23 C -0.143 4.143 24 C -0.191 4.191 25 C -0.102 4.102 26 O -0.065 6.065 27 C -0.060 4.060 28 S 0.446 5.554 29 C -0.181 4.181 30 H 0.065 0.935 31 H 0.220 0.780 32 H 0.073 0.927 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.231 0.769 37 H 0.210 0.790 38 H 0.179 0.821 39 H 0.227 0.773 40 H 0.228 0.772 41 H 0.100 0.900 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.930 -27.129 12.493 32.162 hybrid contribution -0.650 0.683 0.087 0.947 sum 11.279 -26.445 12.580 31.382 Atomic orbital electron populations 1.69674 1.05139 1.25652 1.57455 1.24779 0.95532 0.97817 1.02821 0.86119 0.78773 0.84086 0.77204 1.20534 1.21836 1.21855 1.19347 0.91099 0.84233 1.42893 0.91030 1.42421 1.05779 0.99878 1.86962 1.21515 0.95345 0.85065 0.92702 0.90622 1.23968 1.01429 0.94845 1.00032 1.22659 0.98353 0.94389 0.99392 0.89328 1.21544 0.95420 0.91489 0.90621 1.45964 1.12929 1.35079 1.42884 1.16623 0.86220 0.79629 0.79681 1.90869 1.14144 1.70120 1.65249 1.26098 0.96841 1.08522 1.10736 1.22466 1.01006 0.89897 0.89612 1.66432 1.00769 1.29004 1.22489 1.24323 0.93740 0.97392 0.99082 1.19206 0.91166 1.01669 1.02268 1.22836 0.98952 0.98958 0.98308 1.24018 0.88384 0.96108 1.01656 1.83895 1.39200 1.38563 1.44855 1.24225 0.90656 0.96919 0.94234 1.83660 1.06645 1.31127 1.33971 1.23448 1.01118 0.96916 0.96646 0.93484 0.78049 0.92746 0.90259 0.90723 0.91270 0.76869 0.79018 0.82146 0.77279 0.77189 0.90019 0.91903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.98 13.06 55.49 0.72 -27.26 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 7 C -0.24 -6.69 9.97 -15.06 -0.15 -6.84 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.71 -17.51 5.40 -52.64 -0.28 -17.79 16 10 C 0.17 3.12 4.48 -67.12 -0.30 2.82 16 11 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 12 C -0.16 -2.58 7.43 -25.92 -0.19 -2.77 16 13 C -0.13 -1.64 3.75 -89.81 -0.34 -1.98 16 14 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 15 C 0.13 1.68 5.51 -4.04 -0.02 1.66 16 16 N -0.72 -8.20 5.55 -61.69 -0.34 -8.54 16 17 C 0.59 7.73 7.78 -12.96 -0.10 7.63 16 18 O -0.53 -8.63 16.87 5.17 0.09 -8.54 16 19 C -0.30 -3.24 6.51 -36.78 -0.24 -3.48 16 20 C 0.13 1.42 11.15 -18.55 -0.21 1.21 16 21 N -0.47 -5.19 10.53 -12.04 -0.13 -5.32 16 22 C 0.13 1.17 7.25 -14.31 -0.10 1.07 16 23 C -0.14 -1.09 6.32 -103.27 -0.65 -1.74 16 24 C -0.17 -1.15 11.14 -37.47 -0.42 -1.57 16 25 C -0.04 -0.17 12.03 29.33 0.35 0.18 16 26 O -0.17 -1.03 10.54 7.06 0.07 -0.95 16 27 C 0.01 0.07 11.83 30.01 0.36 0.43 16 28 S 0.19 1.47 22.03 -107.50 -2.37 -0.90 16 29 C -0.14 -2.17 7.39 -25.92 -0.19 -2.36 16 30 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.39 10.12 7.92 -40.82 -0.32 9.80 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.08 1.41 7.90 -51.93 -0.41 1.00 16 34 H 0.07 1.08 7.84 -51.93 -0.41 0.67 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.40 3.64 7.65 -40.82 -0.31 3.33 16 37 H 0.19 1.89 8.06 -52.49 -0.42 1.46 16 38 H 0.16 1.00 8.06 -52.48 -0.42 0.58 16 39 H 0.21 0.21 8.06 -52.48 -0.42 -0.21 16 40 H 0.21 0.53 8.06 -52.48 -0.42 0.11 16 41 H 0.08 1.32 8.08 -51.93 -0.42 0.90 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 381.32 15.07 5.75 5.75 Total: -1.00 -34.31 381.32 -9.04 -43.35 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -5.22 Total: 9.33 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: -2.30 Total: -6.23 kcal Atomic # 7 Polarization: -58.88 SS G_CDS: -0.03 Total: -58.91 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.16 Total: -9.50 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Atomic # 16 Polarization: 1.47 SS G_CDS: -2.37 Total: -0.90 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.31 -9.04 -43.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086218095.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.978 kcal (2) G-P(sol) polarization free energy of solvation -34.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds