Wall clock time and date at job start Sat Apr 11 2020 08:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99763 * 2 1 4 4 H 1.48501 * 109.46991 * 239.99732 * 3 2 1 5 5 H 1.48495 * 109.47111 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47014 * 119.99981 * 3 2 1 7 7 C 1.38812 * 120.00274 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00187 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99770 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99791 * 179.97438 * 9 7 2 11 11 H 1.09002 * 112.84935 * 334.66194 * 10 9 7 12 12 C 1.53786 * 113.61643 * 105.85866 * 10 9 7 13 13 C 1.53962 * 87.01719 * 89.22773 * 12 10 9 14 14 H 1.09002 * 113.61454 * 270.79954 * 13 12 10 15 15 C 1.52994 * 113.66220 * 139.93548 * 13 12 10 16 16 N 1.46498 * 109.47402 * 87.44478 * 15 13 12 17 17 C 1.34776 * 120.00338 * 179.97438 * 16 15 13 18 18 O 1.21496 * 119.99778 * 359.97438 * 17 16 15 19 19 C 1.48345 * 120.00432 * 179.97438 * 17 16 15 20 20 C 1.41701 * 126.81348 * 179.71270 * 19 17 16 21 21 C 1.37159 * 103.79360 * 179.85825 * 20 19 17 22 22 C 1.47037 * 126.85441 * 180.09194 * 21 20 19 23 23 C 1.36198 * 125.33080 * 180.02562 * 22 21 20 24 24 C 1.37720 * 114.44139 * 179.79201 * 23 22 21 25 25 C 1.33738 * 115.18705 * 0.50624 * 24 23 22 26 26 S 1.75826 * 109.96463 * 359.72414 * 25 24 23 27 27 O 1.34567 * 106.28756 * 0.39553 * 21 20 19 28 28 N 1.20871 * 111.68965 * 359.73008 * 27 21 20 29 29 C 1.53781 * 113.61305 * 203.46713 * 10 9 7 30 30 H 0.96996 * 120.00281 * 0.02562 * 1 2 3 31 31 H 0.96995 * 120.00062 * 359.97438 * 9 7 2 32 32 H 1.08993 * 113.61491 * 203.74894 * 12 10 9 33 33 H 1.09000 * 113.61138 * 334.65232 * 12 10 9 34 34 H 1.09005 * 109.46709 * 207.43538 * 15 13 12 35 35 H 1.08998 * 109.47556 * 327.43829 * 15 13 12 36 36 H 0.97001 * 120.00130 * 359.97438 * 16 15 13 37 37 H 1.08000 * 128.10237 * 359.97438 * 20 19 17 38 38 H 1.07998 * 122.78187 * 359.97438 * 23 22 21 39 39 H 1.07996 * 122.40784 * 180.23134 * 24 23 22 40 40 H 1.08003 * 125.01419 * 179.76065 * 25 24 23 41 41 H 1.09001 * 113.61695 * 25.34675 * 29 10 9 42 42 H 1.08996 * 113.61580 * 156.16953 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6965 1.2126 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 1 3.0560 -3.5693 -0.4293 12 6 2.0328 -4.3828 1.3560 13 6 0.7419 -5.0692 0.8732 14 1 -0.1643 -4.5128 1.1127 15 6 0.6511 -6.5470 1.2588 16 7 0.0514 -6.6684 2.5899 17 6 -0.1295 -7.8859 3.1390 18 8 0.2044 -8.8827 2.5299 19 6 -0.7363 -8.0088 4.4871 20 6 -0.9966 -9.2086 5.1948 21 6 -1.5511 -8.7791 6.3736 22 6 -2.0117 -9.6190 7.4891 23 6 -2.5593 -9.1585 8.6480 24 6 -2.9166 -10.1444 9.5407 25 6 -2.6628 -11.3947 9.1395 26 16 -1.9348 -11.3755 7.5391 27 8 -1.5955 -7.4361 6.3025 28 7 -1.1434 -7.0288 5.2582 29 6 1.2469 -4.8365 -0.5606 30 1 -0.4850 0.8400 -0.0004 31 1 0.3557 -2.3881 0.0005 32 1 2.8661 -5.0708 1.4984 33 1 1.8827 -3.7165 2.2054 34 1 0.0330 -7.0746 0.5324 35 1 1.6505 -6.9818 1.2695 36 1 -0.2155 -5.8726 3.0761 37 1 -0.8021 -10.2233 4.8805 38 1 -2.7041 -8.1073 8.8490 39 1 -3.3653 -9.9236 10.4979 40 1 -2.8744 -12.2847 9.7135 41 1 0.4632 -4.5360 -1.2561 42 1 1.8649 -5.6482 -0.9443 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086441312.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:13:23 Heat of formation + Delta-G solvation = 94.809730 kcal Electronic energy + Delta-G solvation = -25838.557626 eV Core-core repulsion = 21914.908786 eV Total energy + Delta-G solvation = -3923.648840 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.37959 -39.85469 -38.50952 -38.27524 -34.84145 -34.42990 -33.38458 -33.02859 -30.21912 -29.17115 -27.78764 -25.36483 -25.08414 -24.56805 -23.59464 -23.11273 -21.74049 -21.02367 -19.74043 -18.94179 -18.31995 -18.16283 -17.36760 -17.11565 -16.81487 -16.06784 -15.78950 -15.43351 -14.92695 -14.65432 -14.20676 -14.14499 -13.84903 -13.75350 -13.64866 -13.34197 -13.18793 -12.91151 -12.87912 -12.33004 -11.95530 -11.91686 -11.43879 -11.42092 -11.05930 -10.86187 -10.83788 -10.78143 -10.60390 -10.47482 -10.20448 -9.92260 -9.69762 -9.53032 -9.14352 -9.10097 -8.88847 -8.80246 -7.00917 -5.81009 -3.10318 -0.18942 0.75793 0.90979 1.32288 1.43295 2.28991 2.59026 2.78543 2.95516 3.42389 3.46826 3.47814 3.62208 3.98014 4.44248 4.50378 4.55314 4.74262 4.79237 4.92499 5.00063 5.00397 5.05358 5.20468 5.36755 5.44275 5.45401 5.57677 5.65672 5.66395 5.80106 5.80460 5.91393 6.05591 6.18523 6.26036 6.35170 6.56052 6.73455 6.86504 7.02788 7.24047 7.61706 7.68116 7.92001 8.38032 9.48627 10.05980 10.40151 11.41289 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.019326 B = 0.001691 C = 0.001580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.450353 B =16556.264802 C =17715.589110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.012 4.012 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.706 5.706 10 C 0.168 3.832 11 H 0.062 0.938 12 C -0.169 4.169 13 C -0.121 4.121 14 H 0.094 0.906 15 C 0.130 3.870 16 N -0.705 5.705 17 C 0.595 3.405 18 O -0.526 6.526 19 C -0.016 4.016 20 C -0.168 4.168 21 C 0.039 3.961 22 C -0.144 4.144 23 C -0.097 4.097 24 C -0.136 4.136 25 C -0.207 4.207 26 S 0.175 5.825 27 O 0.138 5.862 28 N -0.323 5.323 29 C -0.146 4.146 30 H 0.256 0.744 31 H 0.385 0.615 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.410 0.590 37 H 0.183 0.817 38 H 0.152 0.848 39 H 0.149 0.851 40 H 0.172 0.828 41 H 0.069 0.931 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.182 -25.698 18.505 32.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.055 3.945 11 H 0.080 0.920 12 C -0.210 4.210 13 C -0.140 4.140 14 H 0.113 0.887 15 C 0.007 3.993 16 N -0.355 5.355 17 C 0.378 3.622 18 O -0.401 6.401 19 C -0.174 4.174 20 C -0.191 4.191 21 C -0.025 4.025 22 C -0.262 4.262 23 C -0.130 4.130 24 C -0.166 4.166 25 C -0.343 4.343 26 S 0.440 5.560 27 O 0.060 5.940 28 N -0.021 5.021 29 C -0.185 4.185 30 H 0.066 0.934 31 H 0.219 0.781 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.245 0.755 37 H 0.201 0.799 38 H 0.170 0.830 39 H 0.166 0.834 40 H 0.189 0.811 41 H 0.088 0.912 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.276 -26.013 16.790 31.408 hybrid contribution -0.519 1.571 1.297 2.103 sum -5.795 -24.442 18.087 30.954 Atomic orbital electron populations 1.69650 1.05137 1.25921 1.57326 1.24766 0.95539 0.97794 1.02718 0.86240 0.78515 0.83365 0.77889 1.21186 1.21675 1.21222 1.19244 0.91102 0.83977 1.43170 0.91031 1.42162 1.05669 0.99413 1.87182 1.21050 0.95060 0.85616 0.92751 0.91972 1.23937 0.95388 0.99640 1.02075 1.22765 0.99865 0.92657 0.98672 0.88748 1.21625 0.98205 0.97694 0.81750 1.45968 1.61863 1.07760 1.19953 1.16838 0.78584 0.84220 0.82512 1.90800 1.50889 1.36815 1.61595 1.23351 1.05328 0.90264 0.98457 1.22604 1.03470 1.00682 0.92369 1.21260 1.02687 0.83367 0.95204 1.21796 1.11512 0.96362 0.96540 1.20783 0.98549 1.01892 0.91744 1.20063 1.03403 0.91387 1.01713 1.25998 1.06747 1.02072 0.99530 1.84353 1.59020 0.98242 1.14373 1.84939 1.58945 1.20111 1.30038 1.74215 1.11410 1.22635 0.93887 1.23421 1.00616 0.99714 0.94796 0.93377 0.78105 0.91370 0.91413 0.91258 0.91021 0.75487 0.79930 0.83039 0.83373 0.81051 0.91222 0.90346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.93 13.06 55.49 0.72 -27.21 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.24 -6.72 9.97 -15.06 -0.15 -6.87 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.71 -17.43 5.31 -52.64 -0.28 -17.71 16 10 C 0.17 3.27 4.55 -67.12 -0.31 2.96 16 11 H 0.06 1.22 8.11 -51.93 -0.42 0.80 16 12 C -0.17 -2.85 7.45 -25.82 -0.19 -3.05 16 13 C -0.12 -1.83 3.64 -89.71 -0.33 -2.16 16 14 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 15 C 0.13 1.76 5.51 -4.05 -0.02 1.74 16 16 N -0.70 -9.54 5.55 -61.09 -0.34 -9.88 16 17 C 0.60 8.54 7.85 -12.10 -0.09 8.44 16 18 O -0.53 -8.70 16.94 5.37 0.09 -8.61 16 19 C -0.02 -0.20 7.17 -82.66 -0.59 -0.80 16 20 C -0.17 -1.77 10.77 -38.65 -0.42 -2.19 16 21 C 0.04 0.38 7.28 -36.41 -0.26 0.12 16 22 C -0.14 -1.10 6.45 -36.75 -0.24 -1.34 16 23 C -0.10 -0.61 10.17 -40.50 -0.41 -1.02 16 24 C -0.14 -0.64 10.15 -41.35 -0.42 -1.06 16 25 C -0.21 -0.90 11.21 29.15 0.33 -0.58 16 26 S 0.17 1.01 23.11 -107.50 -2.48 -1.47 16 27 O 0.14 1.52 11.21 15.76 0.18 1.70 16 28 N -0.32 -4.08 11.81 33.36 0.39 -3.68 16 29 C -0.15 -2.32 7.38 -25.92 -0.19 -2.51 16 30 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.38 10.06 7.90 -40.82 -0.32 9.74 16 32 H 0.07 1.03 7.90 -51.93 -0.41 0.62 16 33 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.07 0.97 7.85 -51.93 -0.41 0.57 16 36 H 0.41 5.34 8.23 -40.82 -0.34 5.00 16 37 H 0.18 1.62 8.06 -52.49 -0.42 1.20 16 38 H 0.15 0.77 8.06 -52.49 -0.42 0.35 16 39 H 0.15 0.39 8.06 -52.49 -0.42 -0.04 16 40 H 0.17 0.33 8.06 -52.48 -0.42 -0.10 16 41 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 LS Contribution 381.96 15.07 5.76 5.76 Total: -1.00 -32.08 381.96 -9.63 -41.71 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -5.25 Total: 10.89 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: -3.39 Total: -8.75 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: 0.50 Total: -58.48 kcal Atomic # 8 Polarization: -7.18 SS G_CDS: 0.27 Total: -6.91 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -2.48 Total: -1.47 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.08 -9.63 -41.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086441312.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.518 kcal (2) G-P(sol) polarization free energy of solvation -32.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds