Wall clock time and date at job start Sat Apr 11 2020 08:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99763 * 2 1 4 4 H 1.48501 * 109.46991 * 239.99732 * 3 2 1 5 5 H 1.48495 * 109.47111 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47014 * 119.99981 * 3 2 1 7 7 C 1.38812 * 120.00274 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00187 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99770 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99791 * 179.97438 * 9 7 2 11 11 H 1.09002 * 112.84935 * 334.66194 * 10 9 7 12 12 C 1.53786 * 113.61643 * 105.85866 * 10 9 7 13 13 C 1.53962 * 87.01719 * 89.22773 * 12 10 9 14 14 H 1.09002 * 113.61454 * 270.79954 * 13 12 10 15 15 C 1.52994 * 113.66220 * 139.93548 * 13 12 10 16 16 N 1.46498 * 109.47402 * 87.44478 * 15 13 12 17 17 C 1.34776 * 120.00338 * 179.97438 * 16 15 13 18 18 O 1.21496 * 119.99778 * 359.97438 * 17 16 15 19 19 C 1.48345 * 120.00432 * 179.97438 * 17 16 15 20 20 C 1.41701 * 126.81348 * 179.71270 * 19 17 16 21 21 C 1.37159 * 103.79360 * 179.85825 * 20 19 17 22 22 C 1.47037 * 126.85441 * 180.09194 * 21 20 19 23 23 C 1.36198 * 125.33080 * 180.02562 * 22 21 20 24 24 C 1.37720 * 114.44139 * 179.79201 * 23 22 21 25 25 C 1.33738 * 115.18705 * 0.50624 * 24 23 22 26 26 S 1.75826 * 109.96463 * 359.72414 * 25 24 23 27 27 O 1.34567 * 106.28756 * 0.39553 * 21 20 19 28 28 N 1.20871 * 111.68965 * 359.73008 * 27 21 20 29 29 C 1.53781 * 113.61305 * 203.46713 * 10 9 7 30 30 H 0.96996 * 120.00281 * 0.02562 * 1 2 3 31 31 H 0.96995 * 120.00062 * 359.97438 * 9 7 2 32 32 H 1.08993 * 113.61491 * 203.74894 * 12 10 9 33 33 H 1.09000 * 113.61138 * 334.65232 * 12 10 9 34 34 H 1.09005 * 109.46709 * 207.43538 * 15 13 12 35 35 H 1.08998 * 109.47556 * 327.43829 * 15 13 12 36 36 H 0.97001 * 120.00130 * 359.97438 * 16 15 13 37 37 H 1.08000 * 128.10237 * 359.97438 * 20 19 17 38 38 H 1.07998 * 122.78187 * 359.97438 * 23 22 21 39 39 H 1.07996 * 122.40784 * 180.23134 * 24 23 22 40 40 H 1.08003 * 125.01419 * 179.76065 * 25 24 23 41 41 H 1.09001 * 113.61695 * 25.34675 * 29 10 9 42 42 H 1.08996 * 113.61580 * 156.16953 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6965 1.2126 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 1 3.0560 -3.5693 -0.4293 12 6 2.0328 -4.3828 1.3560 13 6 0.7419 -5.0692 0.8732 14 1 -0.1643 -4.5128 1.1127 15 6 0.6511 -6.5470 1.2588 16 7 0.0514 -6.6684 2.5899 17 6 -0.1295 -7.8859 3.1390 18 8 0.2044 -8.8827 2.5299 19 6 -0.7363 -8.0088 4.4871 20 6 -0.9966 -9.2086 5.1948 21 6 -1.5511 -8.7791 6.3736 22 6 -2.0117 -9.6190 7.4891 23 6 -2.5593 -9.1585 8.6480 24 6 -2.9166 -10.1444 9.5407 25 6 -2.6628 -11.3947 9.1395 26 16 -1.9348 -11.3755 7.5391 27 8 -1.5955 -7.4361 6.3025 28 7 -1.1434 -7.0288 5.2582 29 6 1.2469 -4.8365 -0.5606 30 1 -0.4850 0.8400 -0.0004 31 1 0.3557 -2.3881 0.0005 32 1 2.8661 -5.0708 1.4984 33 1 1.8827 -3.7165 2.2054 34 1 0.0330 -7.0746 0.5324 35 1 1.6505 -6.9818 1.2695 36 1 -0.2155 -5.8726 3.0761 37 1 -0.8021 -10.2233 4.8805 38 1 -2.7041 -8.1073 8.8490 39 1 -3.3653 -9.9236 10.4979 40 1 -2.8744 -12.2847 9.7135 41 1 0.4632 -4.5360 -1.2561 42 1 1.8649 -5.6482 -0.9443 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086441312.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:13:22 Heat of formation + Delta-G solvation = 74.722729 kcal Electronic energy + Delta-G solvation = -25839.428664 eV Core-core repulsion = 21914.908786 eV Total energy + Delta-G solvation = -3924.519877 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -46.25284 -41.03306 -39.90026 -38.70660 -36.17848 -35.35076 -35.02063 -33.92437 -32.09543 -29.74474 -29.11659 -26.47450 -26.31091 -25.64379 -25.06688 -24.00303 -23.05509 -21.84317 -20.63163 -19.75229 -19.42743 -19.28671 -19.05220 -18.06758 -17.66282 -17.11735 -16.71608 -16.54368 -16.37307 -15.84002 -15.76650 -15.24697 -14.94194 -14.78650 -14.66149 -14.41819 -14.20955 -13.81653 -13.59569 -13.40077 -13.31438 -12.96294 -12.93942 -12.69800 -12.64661 -12.21329 -12.10623 -11.84114 -11.81169 -11.76424 -11.51985 -11.45638 -11.37683 -10.97841 -10.81989 -10.28441 -9.52233 -9.36295 -9.01397 -7.96316 -5.24906 -0.75696 -0.01564 0.28097 0.79732 0.92933 1.46826 1.49569 1.55677 1.70487 1.81109 1.90941 1.91594 2.54924 2.69170 3.21391 3.36071 3.64388 3.68135 3.72844 3.80547 3.96337 4.02173 4.11138 4.21343 4.28716 4.36293 4.47001 4.59944 4.63662 4.67633 4.68675 4.90561 4.95912 5.04113 5.05871 5.13902 5.26211 5.31321 5.40037 5.41883 5.50875 5.63511 6.15075 6.27012 6.71361 6.84990 7.31976 8.09300 8.31309 9.26709 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.019326 B = 0.001691 C = 0.001580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.450353 B =16556.264802 C =17715.589110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.075 4.075 3 Si 0.974 3.026 4 H -0.277 1.277 5 H -0.296 1.296 6 H -0.279 1.279 7 C -0.245 4.245 8 H 0.077 0.923 9 N -0.720 5.720 10 C 0.144 3.856 11 H 0.062 0.938 12 C -0.156 4.156 13 C -0.106 4.106 14 H 0.078 0.922 15 C 0.138 3.862 16 N -0.702 5.702 17 C 0.597 3.403 18 O -0.551 6.551 19 C -0.032 4.032 20 C -0.180 4.180 21 C 0.057 3.943 22 C -0.182 4.182 23 C -0.088 4.088 24 C -0.147 4.147 25 C -0.189 4.189 26 S 0.173 5.827 27 O 0.138 5.862 28 N -0.342 5.342 29 C -0.129 4.129 30 H 0.251 0.749 31 H 0.374 0.626 32 H 0.094 0.906 33 H 0.043 0.957 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.412 0.588 37 H 0.195 0.805 38 H 0.159 0.841 39 H 0.173 0.827 40 H 0.201 0.799 41 H 0.060 0.940 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.840 -27.598 20.070 34.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.268 4.268 3 Si 0.803 3.197 4 H -0.203 1.203 5 H -0.223 1.223 6 H -0.205 1.205 7 C -0.377 4.377 8 H 0.095 0.905 9 N -0.358 5.358 10 C 0.034 3.966 11 H 0.080 0.920 12 C -0.197 4.197 13 C -0.124 4.124 14 H 0.096 0.904 15 C 0.015 3.985 16 N -0.353 5.353 17 C 0.381 3.619 18 O -0.428 6.428 19 C -0.189 4.189 20 C -0.203 4.203 21 C -0.007 4.007 22 C -0.300 4.300 23 C -0.121 4.121 24 C -0.176 4.176 25 C -0.325 4.325 26 S 0.438 5.562 27 O 0.060 5.940 28 N -0.041 5.041 29 C -0.168 4.168 30 H 0.060 0.940 31 H 0.206 0.794 32 H 0.112 0.888 33 H 0.062 0.938 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.247 0.753 37 H 0.212 0.788 38 H 0.177 0.823 39 H 0.191 0.809 40 H 0.218 0.782 41 H 0.078 0.922 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -4.892 -27.944 18.353 33.788 hybrid contribution -0.646 2.018 0.957 2.325 sum -5.538 -25.926 19.310 32.798 Atomic orbital electron populations 1.69808 1.06593 1.26146 1.59413 1.25567 0.96385 1.01112 1.03687 0.85209 0.77183 0.79163 0.78184 1.20286 1.22253 1.20510 1.19648 0.91559 0.85216 1.41240 0.90512 1.42303 1.05294 1.00596 1.87647 1.21392 0.95211 0.84971 0.95071 0.91997 1.23779 0.97214 0.99311 0.99348 1.22545 0.98381 0.93484 0.98022 0.90379 1.21524 0.98828 0.96187 0.81921 1.45962 1.61601 1.07786 1.19942 1.16979 0.78130 0.83873 0.82901 1.90775 1.52126 1.37464 1.62428 1.23268 1.06161 0.91320 0.98110 1.22736 1.04352 1.00650 0.92586 1.21559 1.01063 0.82718 0.95408 1.21887 1.14152 0.97154 0.96803 1.21092 0.96850 1.02862 0.91312 1.20329 1.03740 0.91043 1.02500 1.26444 1.04504 1.03107 0.98449 1.84382 1.59219 0.96921 1.15661 1.84896 1.58663 1.21014 1.29455 1.74199 1.12359 1.23074 0.94454 1.23317 1.00013 0.98652 0.94867 0.94034 0.79428 0.88780 0.93774 0.90644 0.90198 0.75271 0.78772 0.82347 0.80933 0.78207 0.92169 0.87090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.44 13.06 21.65 0.28 -59.16 16 2 C -0.08 -4.33 5.50 84.86 0.47 -3.86 16 3 Si 0.97 46.27 29.55 68.60 2.03 48.30 16 4 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 5 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 6 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 7 C -0.24 -13.61 9.97 84.03 0.84 -12.78 16 8 H 0.08 4.09 7.83 -2.91 -0.02 4.06 16 9 N -0.72 -36.11 5.31 -320.44 -1.70 -37.81 16 10 C 0.14 5.52 4.55 45.52 0.21 5.73 16 11 H 0.06 2.37 8.11 -2.39 -0.02 2.35 16 12 C -0.16 -5.12 7.45 31.18 0.23 -4.89 16 13 C -0.11 -3.11 3.64 -10.21 -0.04 -3.14 16 14 H 0.08 2.59 8.14 -2.39 -0.02 2.58 16 15 C 0.14 3.55 5.51 86.38 0.48 4.03 16 16 N -0.70 -18.76 5.55 -465.50 -2.58 -21.35 16 17 C 0.60 17.07 7.85 86.93 0.68 17.75 16 18 O -0.55 -18.05 16.94 -3.70 -0.06 -18.11 16 19 C -0.03 -0.82 7.17 42.79 0.31 -0.51 16 20 C -0.18 -3.80 10.77 22.87 0.25 -3.55 16 21 C 0.06 1.09 7.28 24.33 0.18 1.27 16 22 C -0.18 -2.60 6.45 24.10 0.16 -2.45 16 23 C -0.09 -0.95 10.17 21.67 0.22 -0.73 16 24 C -0.15 -0.98 10.15 21.12 0.21 -0.76 16 25 C -0.19 -1.08 11.21 66.80 0.75 -0.33 16 26 S 0.17 1.73 23.11 -56.49 -1.31 0.43 16 27 O 0.14 3.05 11.21 66.59 0.75 3.80 16 28 N -0.34 -8.77 11.81 -48.87 -0.58 -9.35 16 29 C -0.13 -3.93 7.38 31.12 0.23 -3.70 16 30 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 31 H 0.37 20.11 7.90 -92.71 -0.73 19.37 16 32 H 0.09 2.62 7.90 -2.39 -0.02 2.60 16 33 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 35 H 0.08 1.98 7.85 -2.39 -0.02 1.96 16 36 H 0.41 10.79 8.23 -92.71 -0.76 10.03 16 37 H 0.20 3.45 8.06 -2.91 -0.02 3.42 16 38 H 0.16 1.39 8.06 -2.91 -0.02 1.37 16 39 H 0.17 0.29 8.06 -2.91 -0.02 0.26 16 40 H 0.20 -0.05 8.06 -2.91 -0.02 -0.08 16 41 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.11 2.68 8.10 -2.39 -0.02 2.66 16 Total: -1.00 -70.00 381.96 1.57 -68.43 By element: Atomic # 1 Polarization: 33.16 SS G_CDS: -0.42 Total: 32.75 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: 5.16 Total: -7.93 kcal Atomic # 7 Polarization: -123.08 SS G_CDS: -4.58 Total: -127.66 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: 0.68 Total: -14.31 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Atomic # 16 Polarization: 1.73 SS G_CDS: -1.31 Total: 0.43 kcal Total: -70.00 1.57 -68.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086441312.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.149 kcal (2) G-P(sol) polarization free energy of solvation -69.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds