Wall clock time and date at job start Sat Apr 11 2020 08:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99993 * 2 1 4 4 H 1.48500 * 109.47057 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47088 * 299.99552 * 3 2 1 6 6 H 1.48500 * 109.47340 * 59.99684 * 3 2 1 7 7 C 1.38813 * 120.00245 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00410 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99522 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99718 * 179.97438 * 9 7 2 11 11 H 1.09001 * 112.90663 * 336.25283 * 10 9 7 12 12 C 1.53775 * 113.61477 * 107.50170 * 10 9 7 13 13 C 1.53775 * 87.08286 * 89.11746 * 12 10 9 14 14 H 1.09007 * 113.69034 * 270.87272 * 13 12 10 15 15 C 1.53000 * 113.61700 * 139.98155 * 13 12 10 16 16 N 1.46506 * 109.46974 * 87.50574 * 15 13 12 17 17 C 1.34775 * 119.99782 * 180.02562 * 16 15 13 18 18 O 1.21707 * 120.00394 * 359.97438 * 17 16 15 19 19 C 1.46778 * 119.99881 * 179.97438 * 17 16 15 20 20 N 1.35987 * 126.65496 * 76.03281 * 19 17 16 21 21 C 1.29862 * 108.79624 * 180.02562 * 20 19 17 22 22 O 1.34157 * 109.89998 * 359.97438 * 21 20 19 23 23 C 1.34888 * 108.24976 * 0.02562 * 22 21 20 24 24 C 1.46598 * 126.81716 * 179.97438 * 23 22 21 25 25 C 1.36450 * 125.34677 * 5.40198 * 24 23 22 26 26 C 1.37572 * 114.41974 * 179.79042 * 25 24 23 27 27 C 1.33835 * 115.21805 * 0.49811 * 26 25 24 28 28 S 1.75821 * 109.97613 * 359.72674 * 27 26 25 29 29 C 1.53774 * 87.08305 * 25.43183 * 13 12 10 30 30 H 0.97008 * 120.00194 * 0.02562 * 1 2 3 31 31 H 0.96998 * 120.00270 * 359.97438 * 9 7 2 32 32 H 1.09010 * 113.61704 * 334.56498 * 12 10 9 33 33 H 1.09003 * 113.61910 * 203.66152 * 12 10 9 34 34 H 1.08995 * 109.46985 * 327.50350 * 15 13 12 35 35 H 1.09000 * 109.47241 * 207.49959 * 15 13 12 36 36 H 0.96998 * 119.99884 * 359.97438 * 16 15 13 37 37 H 1.08000 * 125.04755 * 180.26785 * 21 20 19 38 38 H 1.07998 * 122.78775 * 359.97438 * 25 24 23 39 39 H 1.08006 * 122.39035 * 180.20264 * 26 25 24 40 40 H 1.07998 * 125.00661 * 179.71164 * 27 26 25 41 41 H 1.09000 * 113.61637 * 89.11767 * 29 13 12 42 42 H 1.09000 * 113.61828 * 219.94110 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 3.0661 -3.5647 -0.4038 12 6 1.9991 -4.4021 1.3443 13 6 0.7205 -5.0791 0.8231 14 1 -0.1911 -4.5251 1.0476 15 6 0.6197 -6.5616 1.1877 16 7 -0.0123 -6.6993 2.5023 17 6 -0.2061 -7.9234 3.0319 18 8 0.1434 -8.9144 2.4179 19 6 -0.8387 -8.0613 4.3491 20 7 -2.1617 -7.9250 4.6326 21 6 -2.3391 -8.1183 5.9045 22 8 -1.1638 -8.3842 6.4943 23 6 -0.2013 -8.3566 5.5497 24 6 1.2320 -8.5910 5.7489 25 6 1.8129 -8.9804 6.9205 26 6 3.1778 -9.1391 6.8534 27 6 3.7242 -8.8786 5.6598 28 16 2.4740 -8.4072 4.5169 29 6 1.2601 -4.8288 -0.5949 30 1 -0.4851 0.8401 -0.0004 31 1 0.3556 -2.3880 0.0005 32 1 1.8293 -3.7478 2.1995 33 1 2.8279 -5.0934 1.4970 34 1 1.6183 -6.9972 1.2172 35 1 0.0192 -7.0796 0.4400 36 1 -0.2905 -5.9094 2.9918 37 1 -3.2919 -8.0762 6.4112 38 1 1.2477 -9.1528 7.8245 39 1 3.7670 -9.4471 7.7046 40 1 4.7777 -8.9476 5.4323 41 1 1.8869 -5.6366 -0.9725 42 1 0.4935 -4.5203 -1.3057 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086507007.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:13:31 Heat of formation + Delta-G solvation = 58.681415 kcal Electronic energy + Delta-G solvation = -26900.446768 eV Core-core repulsion = 22975.231287 eV Total energy + Delta-G solvation = -3925.215481 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.58024 -39.75569 -38.48076 -38.04617 -35.13738 -34.71329 -33.21592 -32.29580 -30.24258 -28.85773 -27.43569 -25.10644 -25.02731 -24.27532 -23.49669 -22.63928 -21.69560 -20.81060 -19.58728 -18.97512 -18.30247 -17.78003 -17.27756 -17.10841 -16.31539 -16.10885 -15.90132 -15.37455 -14.97052 -14.57046 -14.38288 -14.11480 -13.78018 -13.59114 -13.50555 -13.17944 -13.01764 -12.90806 -12.60966 -12.29093 -11.94164 -11.79915 -11.42098 -11.18234 -11.09740 -11.05777 -10.87539 -10.56311 -10.44198 -10.24407 -10.14472 -9.89730 -9.71029 -9.51443 -9.11225 -8.90882 -8.85554 -8.41923 -7.01565 -5.82191 -3.11316 -0.12219 0.92486 1.32147 1.52298 1.98238 2.27911 2.34884 2.46652 3.00397 3.40368 3.46289 3.48457 3.85995 4.17984 4.44793 4.54363 4.66191 4.91072 5.00465 5.03224 5.05657 5.12640 5.21063 5.23747 5.43939 5.59426 5.59724 5.64061 5.70657 5.83111 5.84595 5.93081 5.96023 6.07319 6.19092 6.29951 6.36206 6.56814 6.73333 6.87443 7.02858 7.12335 7.34085 7.68007 7.97493 8.36875 9.47676 10.05301 10.39323 11.40244 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.012583 B = 0.002445 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.662295 B =11450.237456 C =11902.245790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.073 0.927 9 N -0.706 5.706 10 C 0.168 3.832 11 H 0.063 0.937 12 C -0.169 4.169 13 C -0.120 4.120 14 H 0.094 0.906 15 C 0.130 3.870 16 N -0.703 5.703 17 C 0.596 3.404 18 O -0.519 6.519 19 C -0.047 4.047 20 N -0.449 5.449 21 C 0.182 3.818 22 O -0.189 6.189 23 C 0.087 3.913 24 C -0.157 4.157 25 C -0.098 4.098 26 C -0.141 4.141 27 C -0.212 4.212 28 S 0.212 5.788 29 C -0.147 4.147 30 H 0.255 0.745 31 H 0.385 0.615 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.406 0.594 37 H 0.260 0.740 38 H 0.147 0.853 39 H 0.147 0.853 40 H 0.173 0.827 41 H 0.077 0.923 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.814 -20.798 15.225 25.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.373 4.373 8 H 0.091 0.909 9 N -0.345 5.345 10 C 0.055 3.945 11 H 0.081 0.919 12 C -0.210 4.210 13 C -0.139 4.139 14 H 0.113 0.887 15 C 0.007 3.993 16 N -0.353 5.353 17 C 0.379 3.621 18 O -0.394 6.394 19 C -0.170 4.170 20 N -0.177 5.177 21 C -0.045 4.045 22 O -0.075 6.075 23 C 0.030 3.970 24 C -0.275 4.275 25 C -0.131 4.131 26 C -0.171 4.171 27 C -0.349 4.349 28 S 0.479 5.521 29 C -0.187 4.187 30 H 0.065 0.935 31 H 0.219 0.781 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.241 0.759 37 H 0.275 0.725 38 H 0.165 0.835 39 H 0.165 0.835 40 H 0.190 0.810 41 H 0.096 0.904 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.757 -20.766 12.782 24.447 hybrid contribution 0.114 0.696 2.466 2.565 sum 1.871 -20.070 15.248 25.274 Atomic orbital electron populations 1.69671 1.05136 1.25679 1.57505 1.24766 0.95537 0.97797 1.02798 0.86107 0.78820 0.84003 0.77197 1.20483 1.21823 1.21856 1.19331 0.91137 0.83954 1.42861 0.90938 1.42186 1.05710 0.99454 1.87107 1.21046 0.95100 0.85585 0.92724 0.91932 1.23904 0.95589 0.99660 1.01831 1.22730 0.99749 0.92686 0.98754 0.88744 1.21612 0.97701 0.97488 0.82461 1.45998 1.60843 1.07493 1.21009 1.16591 0.78643 0.84183 0.82715 1.90871 1.50835 1.37436 1.60254 1.22000 0.90130 1.10153 0.94767 1.70743 1.15197 1.17256 1.14531 1.28118 0.89224 0.99211 0.87941 1.84451 1.16884 1.68077 1.38129 1.20310 0.87538 1.03336 0.85839 1.21832 0.91391 1.14392 0.99886 1.20687 0.94755 1.00240 0.97404 1.19981 0.94263 1.04363 0.98493 1.26175 1.03908 1.07504 0.97317 1.84878 0.93955 1.63331 1.09906 1.23446 1.00502 0.99708 0.95015 0.93479 0.78090 0.91481 0.91323 0.91092 0.91301 0.75874 0.72482 0.83548 0.83522 0.80969 0.90394 0.91254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.68 13.06 55.49 0.72 -26.96 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.04 29.55 -169.99 -5.02 17.02 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 7 C -0.24 -6.57 9.97 -15.06 -0.15 -6.72 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.71 -17.17 5.31 -52.64 -0.28 -17.45 16 10 C 0.17 3.19 4.56 -67.12 -0.31 2.88 16 11 H 0.06 1.20 8.10 -51.93 -0.42 0.77 16 12 C -0.17 -2.72 7.43 -25.92 -0.19 -2.91 16 13 C -0.12 -1.77 3.63 -89.81 -0.33 -2.09 16 14 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 15 C 0.13 1.72 5.51 -4.04 -0.02 1.70 16 16 N -0.70 -9.31 5.55 -61.58 -0.34 -9.66 16 17 C 0.60 8.78 5.86 -12.81 -0.08 8.71 16 18 O -0.52 -8.89 16.75 5.18 0.09 -8.80 16 19 C -0.05 -0.64 6.91 -82.26 -0.57 -1.21 16 20 N -0.45 -5.62 11.33 -10.98 -0.12 -5.74 16 21 C 0.18 1.55 13.15 51.93 0.68 2.23 16 22 O -0.19 -1.89 10.75 4.47 0.05 -1.84 16 23 C 0.09 1.06 7.27 -35.89 -0.26 0.80 16 24 C -0.16 -1.78 6.43 -36.86 -0.24 -2.01 16 25 C -0.10 -0.89 10.17 -40.47 -0.41 -1.30 16 26 C -0.14 -1.09 10.14 -41.37 -0.42 -1.51 16 27 C -0.21 -1.73 11.22 29.19 0.33 -1.40 16 28 S 0.21 2.30 21.09 -107.50 -2.27 0.04 16 29 C -0.15 -2.29 7.39 -25.92 -0.19 -2.48 16 30 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.39 9.94 7.90 -40.82 -0.32 9.61 16 32 H 0.07 1.20 8.14 -51.92 -0.42 0.78 16 33 H 0.07 0.97 7.90 -51.93 -0.41 0.56 16 34 H 0.07 0.92 7.84 -51.93 -0.41 0.51 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.41 5.03 8.45 -40.82 -0.35 4.69 16 37 H 0.26 0.70 8.06 -52.49 -0.42 0.27 16 38 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 39 H 0.15 0.74 8.06 -52.48 -0.42 0.32 16 40 H 0.17 0.96 8.06 -52.49 -0.42 0.53 16 41 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 42 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 379.09 15.07 5.71 5.71 Total: -1.00 -33.95 379.09 -8.97 -42.91 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -5.25 Total: 10.54 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: -2.25 Total: -5.78 kcal Atomic # 7 Polarization: -59.78 SS G_CDS: -0.02 Total: -59.80 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.13 Total: -10.65 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -2.27 Total: 0.04 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.95 -8.97 -42.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086507007.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.596 kcal (2) G-P(sol) polarization free energy of solvation -33.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds