Wall clock time and date at job start Sat Apr 11 2020 08:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 120.00124 * 2 1 4 4 H 1.48500 * 109.46964 * 272.92548 * 3 2 1 5 5 H 1.48501 * 109.46713 * 32.91965 * 3 2 1 6 6 H 1.48491 * 109.47515 * 152.92106 * 3 2 1 7 7 C 1.38811 * 120.00204 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00366 * 339.35753 * 7 2 1 9 9 N 1.36938 * 120.00109 * 159.35862 * 7 2 1 10 10 C 1.46932 * 120.62988 * 152.62007 * 9 7 2 11 11 C 1.53189 * 108.77182 * 126.39346 * 10 9 7 12 12 C 1.53039 * 109.31773 * 54.63684 * 11 10 9 13 13 H 1.09000 * 109.44600 * 58.63976 * 12 11 10 14 14 N 1.46496 * 109.46659 * 178.61197 * 12 11 10 15 15 C 1.34775 * 119.99991 * 275.07333 * 14 12 11 16 16 O 1.21614 * 120.00145 * 359.97438 * 15 14 12 17 17 C 1.47367 * 120.00058 * 179.97438 * 15 14 12 18 18 C 1.38762 * 120.55441 * 359.97438 * 17 15 14 19 19 N 1.31898 * 121.12272 * 180.02562 * 18 17 15 20 20 C 1.31674 * 122.22145 * 0.02562 * 19 18 17 21 21 C 1.39292 * 121.13574 * 0.02562 * 20 19 18 22 22 S 1.75881 * 131.39618 * 179.97438 * 21 20 19 23 23 C 1.75552 * 91.52302 * 179.40417 * 22 21 20 24 24 C 1.32475 * 110.79494 * 0.47121 * 23 22 21 25 25 C 1.40006 * 115.77805 * 359.49141 * 24 23 22 26 26 C 1.53043 * 109.53711 * 298.63715 * 12 11 10 27 27 H 1.09002 * 109.52016 * 301.39366 * 26 12 11 28 28 O 1.42901 * 109.49882 * 181.31589 * 26 12 11 29 29 C 1.46929 * 120.63331 * 332.62545 * 9 7 2 30 30 H 0.96993 * 120.00194 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.58313 * 6.60746 * 10 9 7 32 32 H 1.09005 * 109.70409 * 246.24786 * 10 9 7 33 33 H 1.08997 * 109.50202 * 294.68413 * 11 10 9 34 34 H 1.09000 * 109.49714 * 174.58652 * 11 10 9 35 35 H 0.97001 * 119.99868 * 95.06362 * 14 12 11 36 36 H 1.07999 * 119.43541 * 0.02764 * 18 17 15 37 37 H 1.07997 * 119.43230 * 179.97438 * 20 19 18 38 38 H 1.08004 * 124.60366 * 179.97438 * 23 22 21 39 39 H 1.07997 * 122.11244 * 179.46564 * 24 23 22 40 40 H 0.96697 * 114.00178 * 180.16070 * 28 26 12 41 41 H 1.08997 * 109.59036 * 113.81680 * 29 9 7 42 42 H 1.09002 * 109.58453 * 353.39140 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4358 2.0821 -1.3983 5 1 1.4799 2.6340 0.7609 6 1 3.5772 1.4232 0.6373 7 6 2.0103 -1.2021 -0.0005 8 1 1.5224 -2.1076 0.3288 9 7 3.3137 -1.2400 -0.4186 10 6 4.2350 -2.2632 0.0944 11 6 4.8750 -2.9899 -1.0926 12 6 5.5289 -1.9643 -2.0213 13 1 6.2780 -1.3987 -1.4672 14 7 6.1706 -2.6584 -3.1405 15 6 7.4209 -3.1431 -3.0051 16 8 8.0166 -3.0038 -1.9540 17 6 8.0662 -3.8419 -4.1307 18 6 7.3970 -4.0077 -5.3349 19 7 7.9636 -4.6317 -6.3495 20 6 9.1816 -5.1269 -6.2774 21 6 9.9372 -5.0141 -5.1127 22 16 11.5613 -5.5647 -4.7221 23 6 11.4517 -4.8898 -3.1052 24 6 10.2726 -4.3173 -2.9134 25 6 9.3927 -4.3561 -4.0017 26 6 4.4623 -1.0074 -2.5589 27 1 3.6995 -1.5748 -3.0921 28 8 5.0688 -0.0691 -3.4499 29 6 3.8177 -0.2581 -1.3886 30 1 -0.4850 0.8400 0.0004 31 1 3.6839 -2.9773 0.7061 32 1 5.0119 -1.7902 0.6953 33 1 4.1085 -3.5390 -1.6393 34 1 5.6314 -3.6853 -0.7285 35 1 5.6956 -2.7693 -3.9789 36 1 6.3951 -3.6193 -5.4433 37 1 9.6016 -5.6298 -7.1359 38 1 12.2360 -4.9418 -2.3644 39 1 10.0066 -3.8506 -1.9765 40 1 4.4503 0.5712 -3.8274 41 1 4.5602 0.3804 -0.9101 42 1 2.9911 0.3505 -1.7553 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090505705.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:14:16 Heat of formation + Delta-G solvation = 7.255833 kcal Electronic energy + Delta-G solvation = -27924.522224 eV Core-core repulsion = 23997.076763 eV Total energy + Delta-G solvation = -3927.445462 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.12687 -39.58786 -38.09111 -36.67942 -35.56993 -34.57725 -32.66803 -31.74919 -30.67778 -30.06058 -29.16994 -25.67761 -24.91097 -24.31068 -23.08285 -21.88084 -21.37384 -20.80036 -19.90276 -18.65884 -17.70384 -17.09100 -16.95180 -16.67021 -16.36670 -15.95791 -15.30951 -15.06336 -14.68421 -14.41857 -14.40285 -14.33683 -14.02222 -13.84330 -13.40722 -13.06522 -12.90562 -12.59092 -12.51299 -12.45509 -12.34892 -12.19615 -11.46403 -11.30860 -11.07309 -10.95083 -10.56970 -10.52030 -10.41850 -10.23920 -9.91914 -9.75587 -9.66333 -9.55015 -9.43960 -8.97392 -8.73003 -8.25680 -7.12831 -6.05586 -3.43200 -0.09886 0.38619 1.01515 1.45806 1.99050 2.66603 3.04371 3.20847 3.41876 3.44989 3.52688 3.90989 4.12664 4.25349 4.34935 4.42345 4.44684 4.70951 4.84386 4.90680 4.96945 5.13402 5.19634 5.23454 5.37482 5.53299 5.55181 5.70123 5.74233 5.76949 5.89519 5.98740 6.02895 6.17977 6.20667 6.33582 6.44598 6.51352 6.58425 6.75960 7.39601 7.46567 7.73765 7.89578 8.14106 8.22109 8.80892 9.59518 9.95111 11.09920 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.024989 B = 0.002482 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.244689 B =11279.793200 C =11632.974056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.025 3.975 3 Si 0.881 3.119 4 H -0.289 1.289 5 H -0.301 1.301 6 H -0.269 1.269 7 C -0.264 4.264 8 H 0.089 0.911 9 N -0.602 5.602 10 C 0.148 3.852 11 C -0.142 4.142 12 C 0.163 3.837 13 H 0.092 0.908 14 N -0.706 5.706 15 C 0.563 3.437 16 O -0.533 6.533 17 C -0.144 4.144 18 C 0.126 3.874 19 N -0.474 5.474 20 C 0.178 3.822 21 C -0.217 4.217 22 S 0.117 5.883 23 C -0.172 4.172 24 C -0.122 4.122 25 C 0.017 3.983 26 C 0.079 3.921 27 H 0.064 0.936 28 O -0.571 6.571 29 C 0.102 3.898 30 H 0.264 0.736 31 H 0.071 0.929 32 H 0.029 0.971 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.398 0.602 36 H 0.165 0.835 37 H 0.166 0.834 38 H 0.176 0.824 39 H 0.169 0.831 40 H 0.378 0.622 41 H 0.037 0.963 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.936 -10.315 -12.162 26.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.175 4.175 3 Si 0.711 3.289 4 H -0.217 1.217 5 H -0.229 1.229 6 H -0.194 1.194 7 C -0.392 4.392 8 H 0.107 0.893 9 N -0.326 5.326 10 C 0.022 3.978 11 C -0.182 4.182 12 C 0.059 3.941 13 H 0.110 0.890 14 N -0.356 5.356 15 C 0.349 3.651 16 O -0.411 6.411 17 C -0.151 4.151 18 C -0.027 4.027 19 N -0.183 5.183 20 C 0.011 3.989 21 C -0.335 4.335 22 S 0.379 5.621 23 C -0.307 4.307 24 C -0.151 4.151 25 C 0.000 4.000 26 C 0.018 3.982 27 H 0.082 0.918 28 O -0.376 6.376 29 C -0.025 4.025 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.047 0.953 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.233 0.767 36 H 0.182 0.818 37 H 0.183 0.817 38 H 0.193 0.807 39 H 0.187 0.813 40 H 0.225 0.775 41 H 0.055 0.945 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 22.339 -11.297 -12.702 28.071 hybrid contribution -0.990 2.161 0.971 2.568 sum 21.349 -9.136 -11.731 26.016 Atomic orbital electron populations 1.69827 1.05706 1.26710 1.52432 1.25304 0.95254 0.97590 0.99341 0.86995 0.80188 0.84652 0.77034 1.21716 1.22916 1.19431 1.18933 0.84704 0.94949 1.40589 0.89331 1.44335 1.08864 1.33295 1.46155 1.20961 0.92467 0.91368 0.92998 1.22438 0.99806 0.97888 0.98066 1.21019 0.94261 0.92087 0.86750 0.89016 1.45976 1.15105 1.57336 1.17191 1.17781 0.81527 0.78825 0.86956 1.90729 1.63693 1.58134 1.28589 1.20903 0.94374 1.03339 0.96458 1.22774 0.99478 0.93235 0.87253 1.67748 1.10443 1.09891 1.30208 1.22395 0.88750 0.93306 0.94486 1.23874 1.01199 1.08417 0.99992 1.84166 1.09753 1.59263 1.08943 1.25610 1.01742 1.03284 1.00103 1.20321 0.92245 1.01655 1.00891 1.18270 0.93438 0.95423 0.92853 1.22800 0.93499 0.90239 0.91661 0.91777 1.86438 1.39999 1.47405 1.63750 1.22034 0.97801 0.92788 0.89906 0.92613 0.91071 0.95308 0.91388 0.91255 0.76708 0.81840 0.81705 0.80699 0.81344 0.77480 0.94534 0.90261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.80 13.97 55.49 0.78 -26.02 16 2 C 0.02 0.68 5.23 -17.43 -0.09 0.59 16 3 Si 0.88 21.59 24.34 -169.99 -4.14 17.46 16 4 H -0.29 -6.70 6.62 56.52 0.37 -6.32 16 5 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 6 H -0.27 -6.59 6.63 56.52 0.37 -6.22 16 7 C -0.26 -7.05 10.04 -15.06 -0.15 -7.20 16 8 H 0.09 2.53 8.06 -52.49 -0.42 2.10 16 9 N -0.60 -13.60 2.77 -172.32 -0.48 -14.08 16 10 C 0.15 2.83 6.52 -3.71 -0.02 2.81 16 11 C -0.14 -2.30 5.65 -26.61 -0.15 -2.45 16 12 C 0.16 2.62 2.12 -67.89 -0.14 2.47 16 13 H 0.09 1.68 7.58 -51.93 -0.39 1.28 16 14 N -0.71 -9.56 4.87 -54.86 -0.27 -9.83 16 15 C 0.56 8.12 7.73 -12.55 -0.10 8.02 16 16 O -0.53 -9.08 14.13 5.27 0.07 -9.01 16 17 C -0.14 -1.78 5.94 -104.21 -0.62 -2.40 16 18 C 0.13 1.35 10.67 -17.33 -0.18 1.17 16 19 N -0.47 -5.10 10.32 -12.88 -0.13 -5.23 16 20 C 0.18 1.64 11.20 -17.23 -0.19 1.45 16 21 C -0.22 -2.17 6.52 -38.48 -0.25 -2.42 16 22 S 0.12 0.89 23.29 -107.50 -2.50 -1.61 16 23 C -0.17 -1.43 11.10 28.82 0.32 -1.11 16 24 C -0.12 -1.36 9.43 -40.84 -0.39 -1.75 16 25 C 0.02 0.20 5.88 -106.74 -0.63 -0.42 16 26 C 0.08 1.32 3.14 -26.61 -0.08 1.24 16 27 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 28 O -0.57 -8.61 13.16 -35.23 -0.46 -9.08 16 29 C 0.10 2.09 3.83 -3.71 -0.01 2.08 16 30 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.07 1.34 7.93 -51.93 -0.41 0.92 16 32 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.40 4.42 6.64 -40.82 -0.27 4.15 16 36 H 0.16 1.38 6.37 -52.49 -0.33 1.05 16 37 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.18 0.95 8.06 -52.48 -0.42 0.53 16 39 H 0.17 2.09 6.28 -52.49 -0.33 1.76 16 40 H 0.38 4.45 9.08 45.56 0.41 4.86 16 41 H 0.04 0.78 7.08 -51.93 -0.37 0.41 16 42 H 0.08 1.75 4.49 -51.93 -0.23 1.51 16 LS Contribution 352.71 15.07 5.32 5.32 Total: -1.00 -32.83 352.71 -8.59 -41.42 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -4.08 Total: 8.60 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: -2.70 Total: 2.06 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: -0.10 Total: -55.15 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.39 Total: -18.09 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.14 Total: 17.46 kcal Atomic # 16 Polarization: 0.89 SS G_CDS: -2.50 Total: -1.61 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.83 -8.59 -41.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090505705.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.675 kcal (2) G-P(sol) polarization free energy of solvation -32.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds