Wall clock time and date at job start Sat Apr 11 2020 08:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 120.00124 * 2 1 4 4 H 1.48500 * 109.46964 * 272.92548 * 3 2 1 5 5 H 1.48501 * 109.46713 * 32.91965 * 3 2 1 6 6 H 1.48491 * 109.47515 * 152.92106 * 3 2 1 7 7 C 1.38811 * 120.00204 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00366 * 339.35753 * 7 2 1 9 9 N 1.36938 * 120.00109 * 159.35862 * 7 2 1 10 10 C 1.46932 * 120.62988 * 152.62007 * 9 7 2 11 11 C 1.53189 * 108.77182 * 126.39346 * 10 9 7 12 12 C 1.53039 * 109.31773 * 54.63684 * 11 10 9 13 13 H 1.09000 * 109.44600 * 58.63976 * 12 11 10 14 14 N 1.46496 * 109.46659 * 178.61197 * 12 11 10 15 15 C 1.34775 * 119.99991 * 275.07333 * 14 12 11 16 16 O 1.21614 * 120.00145 * 359.97438 * 15 14 12 17 17 C 1.47367 * 120.00058 * 179.97438 * 15 14 12 18 18 C 1.38762 * 120.55441 * 359.97438 * 17 15 14 19 19 N 1.31898 * 121.12272 * 180.02562 * 18 17 15 20 20 C 1.31674 * 122.22145 * 0.02562 * 19 18 17 21 21 C 1.39292 * 121.13574 * 0.02562 * 20 19 18 22 22 S 1.75881 * 131.39618 * 179.97438 * 21 20 19 23 23 C 1.75552 * 91.52302 * 179.40417 * 22 21 20 24 24 C 1.32475 * 110.79494 * 0.47121 * 23 22 21 25 25 C 1.40006 * 115.77805 * 359.49141 * 24 23 22 26 26 C 1.53043 * 109.53711 * 298.63715 * 12 11 10 27 27 H 1.09002 * 109.52016 * 301.39366 * 26 12 11 28 28 O 1.42901 * 109.49882 * 181.31589 * 26 12 11 29 29 C 1.46929 * 120.63331 * 332.62545 * 9 7 2 30 30 H 0.96993 * 120.00194 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.58313 * 6.60746 * 10 9 7 32 32 H 1.09005 * 109.70409 * 246.24786 * 10 9 7 33 33 H 1.08997 * 109.50202 * 294.68413 * 11 10 9 34 34 H 1.09000 * 109.49714 * 174.58652 * 11 10 9 35 35 H 0.97001 * 119.99868 * 95.06362 * 14 12 11 36 36 H 1.07999 * 119.43541 * 0.02764 * 18 17 15 37 37 H 1.07997 * 119.43230 * 179.97438 * 20 19 18 38 38 H 1.08004 * 124.60366 * 179.97438 * 23 22 21 39 39 H 1.07997 * 122.11244 * 179.46564 * 24 23 22 40 40 H 0.96697 * 114.00178 * 180.16070 * 28 26 12 41 41 H 1.08997 * 109.59036 * 113.81680 * 29 9 7 42 42 H 1.09002 * 109.58453 * 353.39140 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4358 2.0821 -1.3983 5 1 1.4799 2.6340 0.7609 6 1 3.5772 1.4232 0.6373 7 6 2.0103 -1.2021 -0.0005 8 1 1.5224 -2.1076 0.3288 9 7 3.3137 -1.2400 -0.4186 10 6 4.2350 -2.2632 0.0944 11 6 4.8750 -2.9899 -1.0926 12 6 5.5289 -1.9643 -2.0213 13 1 6.2780 -1.3987 -1.4672 14 7 6.1706 -2.6584 -3.1405 15 6 7.4209 -3.1431 -3.0051 16 8 8.0166 -3.0038 -1.9540 17 6 8.0662 -3.8419 -4.1307 18 6 7.3970 -4.0077 -5.3349 19 7 7.9636 -4.6317 -6.3495 20 6 9.1816 -5.1269 -6.2774 21 6 9.9372 -5.0141 -5.1127 22 16 11.5613 -5.5647 -4.7221 23 6 11.4517 -4.8898 -3.1052 24 6 10.2726 -4.3173 -2.9134 25 6 9.3927 -4.3561 -4.0017 26 6 4.4623 -1.0074 -2.5589 27 1 3.6995 -1.5748 -3.0921 28 8 5.0688 -0.0691 -3.4499 29 6 3.8177 -0.2581 -1.3886 30 1 -0.4850 0.8400 0.0004 31 1 3.6839 -2.9773 0.7061 32 1 5.0119 -1.7902 0.6953 33 1 4.1085 -3.5390 -1.6393 34 1 5.6314 -3.6853 -0.7285 35 1 5.6956 -2.7693 -3.9789 36 1 6.3951 -3.6193 -5.4433 37 1 9.6016 -5.6298 -7.1359 38 1 12.2360 -4.9418 -2.3644 39 1 10.0066 -3.8506 -1.9765 40 1 4.4503 0.5712 -3.8274 41 1 4.5602 0.3804 -0.9101 42 1 2.9911 0.3505 -1.7553 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090505705.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:14:15 Heat of formation + Delta-G solvation = -18.219308 kcal Electronic energy + Delta-G solvation = -27925.626909 eV Core-core repulsion = 23997.076763 eV Total energy + Delta-G solvation = -3928.550147 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.99655 -40.74698 -39.40226 -37.44351 -37.04407 -35.88189 -34.24070 -33.05374 -31.55993 -31.39673 -30.63390 -27.19156 -25.73364 -25.43579 -24.55865 -23.38160 -22.21115 -21.84253 -21.35699 -19.66527 -18.86078 -18.52537 -18.30825 -17.73705 -17.36586 -16.99816 -16.60375 -16.30997 -16.11585 -15.58747 -15.37221 -15.22953 -15.12027 -15.08432 -14.94535 -14.64585 -14.21482 -14.00575 -13.76924 -13.69114 -13.32932 -13.15152 -13.06000 -12.72209 -12.50797 -12.37777 -12.03621 -11.99846 -11.74566 -11.52498 -11.32437 -11.12463 -11.03509 -10.77138 -10.60498 -10.22791 -10.10967 -9.03478 -8.92611 -8.19529 -5.53483 -0.88589 -0.36465 0.35917 0.76376 1.22318 1.25067 1.41460 1.49065 1.69330 1.95452 2.37133 2.67061 2.86778 3.10288 3.20856 3.30806 3.41106 3.58945 3.66247 3.75133 3.94709 3.97687 4.04816 4.14731 4.23308 4.28626 4.32983 4.47241 4.54331 4.67249 4.74076 4.80449 4.87064 4.90177 4.99724 5.04203 5.17039 5.27608 5.31059 5.37108 5.81258 6.10069 6.40597 6.65588 6.70612 6.86453 7.07983 7.55030 7.94688 8.99760 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.024989 B = 0.002482 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.244689 B =11279.793200 C =11632.974056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.029 4.029 3 Si 0.940 3.060 4 H -0.266 1.266 5 H -0.311 1.311 6 H -0.270 1.270 7 C -0.250 4.250 8 H 0.060 0.940 9 N -0.613 5.613 10 C 0.145 3.855 11 C -0.127 4.127 12 C 0.170 3.830 13 H 0.071 0.929 14 N -0.697 5.697 15 C 0.564 3.436 16 O -0.566 6.566 17 C -0.170 4.170 18 C 0.133 3.867 19 N -0.492 5.492 20 C 0.189 3.811 21 C -0.237 4.237 22 S 0.180 5.820 23 C -0.156 4.156 24 C -0.158 4.158 25 C -0.001 4.001 26 C 0.096 3.904 27 H 0.073 0.927 28 O -0.570 6.570 29 C 0.097 3.903 30 H 0.263 0.737 31 H 0.068 0.932 32 H 0.031 0.969 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.411 0.589 36 H 0.182 0.818 37 H 0.200 0.800 38 H 0.204 0.796 39 H 0.147 0.853 40 H 0.395 0.605 41 H 0.032 0.968 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.739 -11.170 -14.538 29.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.224 4.224 3 Si 0.769 3.231 4 H -0.192 1.192 5 H -0.240 1.240 6 H -0.195 1.195 7 C -0.380 4.380 8 H 0.078 0.922 9 N -0.339 5.339 10 C 0.019 3.981 11 C -0.167 4.167 12 C 0.065 3.935 13 H 0.089 0.911 14 N -0.348 5.348 15 C 0.352 3.648 16 O -0.447 6.447 17 C -0.177 4.177 18 C -0.020 4.020 19 N -0.201 5.201 20 C 0.022 3.978 21 C -0.355 4.355 22 S 0.443 5.557 23 C -0.292 4.292 24 C -0.188 4.188 25 C -0.018 4.018 26 C 0.035 3.965 27 H 0.091 0.909 28 O -0.377 6.377 29 C -0.029 4.029 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.049 0.951 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.249 0.751 36 H 0.199 0.801 37 H 0.217 0.783 38 H 0.221 0.779 39 H 0.165 0.835 40 H 0.245 0.755 41 H 0.050 0.950 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 25.176 -12.161 -15.137 31.794 hybrid contribution -1.689 2.286 1.683 3.303 sum 23.487 -9.875 -13.455 28.813 Atomic orbital electron populations 1.69942 1.07250 1.27322 1.55130 1.25854 0.95774 1.00614 1.00163 0.86037 0.78418 0.80650 0.78039 1.19190 1.24027 1.19498 1.18870 0.86230 0.93849 1.39033 0.92246 1.44417 1.08013 1.34331 1.47142 1.21080 0.91948 0.90757 0.94286 1.22243 0.99827 0.97656 0.96991 1.20725 0.93559 0.91920 0.87323 0.91115 1.45747 1.15046 1.56950 1.17039 1.18108 0.81298 0.78297 0.87137 1.90712 1.64451 1.59462 1.30050 1.20743 0.95202 1.05381 0.96412 1.23023 0.99978 0.92383 0.86591 1.67842 1.11363 1.10797 1.30091 1.23003 0.88056 0.91675 0.95102 1.24149 1.02832 1.08782 0.99735 1.83966 1.07240 1.57348 1.07172 1.26038 1.01132 1.00687 1.01367 1.20225 0.93759 1.04284 1.00499 1.18501 0.93604 0.95875 0.93848 1.22416 0.93585 0.90111 0.90377 0.90890 1.86430 1.40521 1.47647 1.63075 1.22057 0.97307 0.92695 0.90817 0.92775 0.91305 0.95069 0.90883 0.90479 0.75141 0.80140 0.78301 0.77916 0.83512 0.75547 0.95008 0.91549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.77 13.97 21.65 0.30 -57.46 16 2 C -0.03 -1.61 5.23 84.86 0.44 -1.17 16 3 Si 0.94 45.00 24.34 68.60 1.67 46.67 16 4 H -0.27 -11.57 6.62 99.48 0.66 -10.92 16 5 H -0.31 -15.34 7.11 99.48 0.71 -14.64 16 6 H -0.27 -12.81 6.63 99.48 0.66 -12.15 16 7 C -0.25 -13.65 10.04 84.03 0.84 -12.80 16 8 H 0.06 3.52 8.06 -2.91 -0.02 3.50 16 9 N -0.61 -27.72 2.77 -699.09 -1.94 -29.66 16 10 C 0.14 5.52 6.52 86.36 0.56 6.08 16 11 C -0.13 -4.05 5.65 30.67 0.17 -3.88 16 12 C 0.17 5.31 2.12 45.02 0.10 5.41 16 13 H 0.07 2.56 7.58 -2.39 -0.02 2.54 16 14 N -0.70 -18.14 4.87 -445.74 -2.17 -20.31 16 15 C 0.56 16.16 7.73 86.65 0.67 16.83 16 16 O -0.57 -19.71 14.13 -4.07 -0.06 -19.77 16 17 C -0.17 -4.13 5.94 -19.60 -0.12 -4.24 16 18 C 0.13 2.66 10.67 84.81 0.90 3.57 16 19 N -0.49 -9.50 10.32 -194.65 -2.01 -11.51 16 20 C 0.19 2.96 11.20 84.97 0.95 3.91 16 21 C -0.24 -4.21 6.52 22.98 0.15 -4.06 16 22 S 0.18 2.17 23.29 -56.49 -1.32 0.85 16 23 C -0.16 -2.26 11.10 66.69 0.74 -1.52 16 24 C -0.16 -3.48 9.43 21.57 0.20 -3.27 16 25 C 0.00 -0.03 5.88 -21.24 -0.12 -0.15 16 26 C 0.10 3.06 3.14 30.67 0.10 3.16 16 27 H 0.07 2.23 8.14 -2.39 -0.02 2.22 16 28 O -0.57 -15.88 13.16 -148.98 -1.96 -17.85 16 29 C 0.10 3.92 3.83 86.36 0.33 4.25 16 30 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 31 H 0.07 2.62 7.93 -2.39 -0.02 2.60 16 32 H 0.03 1.18 8.14 -2.38 -0.02 1.17 16 33 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.41 8.41 6.64 -92.71 -0.62 7.80 16 36 H 0.18 2.71 6.37 -2.91 -0.02 2.69 16 37 H 0.20 1.56 8.06 -2.91 -0.02 1.53 16 38 H 0.20 1.61 8.06 -2.91 -0.02 1.58 16 39 H 0.15 3.83 6.28 -2.91 -0.02 3.81 16 40 H 0.39 8.21 9.08 -74.06 -0.67 7.54 16 41 H 0.03 1.32 7.08 -2.39 -0.02 1.31 16 42 H 0.07 2.84 4.49 -2.39 -0.01 2.83 16 Total: -1.00 -72.68 352.71 -1.84 -74.52 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: -0.28 Total: 22.43 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: 5.92 Total: 12.09 kcal Atomic # 7 Polarization: -113.13 SS G_CDS: -5.81 Total: -118.94 kcal Atomic # 8 Polarization: -35.59 SS G_CDS: -2.02 Total: -37.61 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.67 Total: 46.67 kcal Atomic # 16 Polarization: 2.17 SS G_CDS: -1.32 Total: 0.85 kcal Total: -72.68 -1.84 -74.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090505705.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.299 kcal (2) G-P(sol) polarization free energy of solvation -72.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds