Wall clock time and date at job start Sat Apr 11 2020 08:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30448 * 125.98949 * 2 1 4 4 N 1.39934 * 108.89974 * 180.02562 * 3 2 1 5 5 C 1.46496 * 125.75626 * 179.97438 * 4 3 2 6 6 C 1.34266 * 108.48849 * 359.74672 * 4 3 2 7 7 C 1.38042 * 107.41769 * 0.39891 * 6 4 3 8 8 C 1.47420 * 126.41642 * 179.86976 * 7 6 4 9 9 O 1.21600 * 120.00396 * 179.69005 * 8 7 6 10 10 N 1.34786 * 120.00078 * 359.68701 * 8 7 6 11 11 C 1.46497 * 119.99946 * 179.97438 * 10 8 7 12 12 H 1.08998 * 115.51804 * 9.58546 * 11 10 8 13 13 C 1.53005 * 117.40705 * 224.21526 * 11 10 8 14 14 H 1.08998 * 119.52473 * 4.07657 * 13 11 10 15 15 C 1.54375 * 118.12583 * 160.67531 * 13 11 10 16 16 N 1.48558 * 104.59740 * 87.22965 * 15 13 11 17 17 C 1.46896 * 111.00234 * 200.95864 * 16 15 13 18 18 C 1.50700 * 109.46942 * 285.41735 * 17 16 15 19 19 O 1.21293 * 120.00282 * 359.97438 * 18 17 16 20 20 N 1.34777 * 120.00075 * 179.97438 * 18 17 16 21 21 C 1.37104 * 120.00173 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99666 * 359.97438 * 21 20 18 23 23 C 1.38945 * 120.00001 * 180.27893 * 21 20 18 24 24 N 1.31407 * 120.00135 * 179.72366 * 23 21 20 25 25 Si 1.86800 * 120.00194 * 359.72088 * 23 21 20 26 26 H 1.48500 * 109.47210 * 89.99937 * 25 23 21 27 27 H 1.48496 * 109.47530 * 210.00374 * 25 23 21 28 28 H 1.48501 * 109.47312 * 330.00618 * 25 23 21 29 29 C 1.48563 * 104.22188 * 320.51595 * 16 15 13 30 30 C 1.53001 * 117.43955 * 155.00329 * 11 10 8 31 31 H 1.09006 * 119.52773 * 354.30402 * 30 11 10 32 32 H 1.09003 * 109.47088 * 270.00191 * 1 2 3 33 33 H 1.09003 * 109.47025 * 30.00015 * 1 2 3 34 34 H 1.09001 * 109.47287 * 149.99858 * 1 2 3 35 35 H 1.08998 * 109.47107 * 90.02096 * 5 4 3 36 36 H 1.08996 * 109.47420 * 210.01822 * 5 4 3 37 37 H 1.08996 * 109.46855 * 330.02137 * 5 4 3 38 38 H 1.07999 * 126.28922 * 180.24563 * 6 4 3 39 39 H 0.97006 * 119.99456 * 0.02562 * 10 8 7 40 40 H 1.09002 * 110.41126 * 328.44886 * 15 13 11 41 41 H 1.09004 * 110.40624 * 206.00610 * 15 13 11 42 42 H 1.08994 * 109.47346 * 165.42040 * 17 16 15 43 43 H 1.08998 * 109.47279 * 45.41712 * 17 16 15 44 44 H 0.97000 * 120.00140 * 0.02562 * 20 18 17 45 45 H 0.97004 * 120.00486 * 179.97438 * 24 23 21 46 46 H 1.09000 * 110.41438 * 158.26118 * 29 16 15 47 47 H 1.08996 * 110.41012 * 280.70357 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0555 0.0000 4 7 3.6111 0.6443 -0.0006 5 6 4.7787 1.5290 -0.0013 6 6 3.6439 -0.6980 0.0047 7 6 2.3373 -1.1432 -0.0006 8 6 1.8915 -2.5485 -0.0003 9 8 0.7039 -2.8097 0.0004 10 7 2.8004 -3.5438 -0.0009 11 6 2.3574 -4.9402 0.0000 12 1 1.2908 -5.0945 -0.1628 13 6 3.0734 -5.9056 0.9468 14 1 3.8317 -5.5240 1.6305 15 6 2.3654 -7.2288 1.3089 16 7 2.7625 -8.1726 0.2325 17 6 1.8168 -9.2928 0.1393 18 6 2.0436 -10.2386 1.2905 19 8 2.9082 -10.0029 2.1078 20 7 1.2856 -11.3464 1.4118 21 6 1.4915 -12.2066 2.4594 22 1 2.2614 -11.9967 3.1871 23 6 0.7139 -13.3517 2.5812 24 7 0.9148 -14.1789 3.5822 25 14 -0.6172 -13.7151 1.3221 26 1 -0.0443 -14.5223 0.2150 27 1 -1.7175 -14.4735 1.9696 28 1 -1.1481 -12.4385 0.7803 29 6 2.7354 -7.3488 -1.0035 30 6 3.3168 -5.9845 -0.5745 31 1 4.2444 -5.6600 -1.0460 32 1 -0.3633 0.0000 1.0277 33 1 -0.3633 0.8900 -0.5139 34 1 -0.3634 -0.8900 -0.5139 35 1 5.0690 1.7483 1.0262 36 1 5.6055 1.0393 -0.5157 37 1 4.5304 2.4578 -0.5148 38 1 4.5298 -1.3157 0.0094 39 1 3.7478 -3.3354 -0.0011 40 1 1.2840 -7.0921 1.3148 41 1 2.7091 -7.5909 2.2778 42 1 1.9715 -9.8216 -0.8012 43 1 0.7966 -8.9113 0.1781 44 1 0.5944 -11.5352 0.7580 45 1 0.3718 -14.9782 3.6675 46 1 3.3576 -7.8013 -1.7757 47 1 1.7120 -7.2310 -1.3594 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114053762.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:20:39 Heat of formation + Delta-G solvation = 60.363325 kcal Electronic energy + Delta-G solvation = -29101.144550 eV Core-core repulsion = 24901.374977 eV Total energy + Delta-G solvation = -4199.769573 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.87237 -40.36665 -39.01988 -38.02884 -35.24877 -34.40170 -33.89633 -32.86787 -31.61755 -30.78763 -29.78636 -28.37608 -27.77139 -26.38438 -24.63299 -23.30276 -22.18683 -21.09920 -20.73921 -20.32925 -20.00883 -19.28371 -18.26573 -18.02773 -16.89322 -16.42919 -16.26134 -15.87672 -15.27375 -15.07981 -14.89202 -14.73453 -14.67666 -14.28052 -13.83056 -13.73645 -13.58107 -13.49108 -13.23327 -13.00946 -12.86700 -12.62080 -12.54897 -12.41258 -12.32678 -12.12753 -11.78148 -11.47126 -11.38770 -11.29946 -11.11848 -10.83056 -10.56529 -10.16399 -10.07401 -9.94401 -9.81781 -9.52354 -9.20656 -8.87171 -8.59774 -8.14797 -8.07541 -6.27680 -3.78905 1.01514 1.76671 1.83926 2.73793 3.04343 3.05670 3.09617 3.17781 3.61908 3.78110 3.84120 3.98848 4.05461 4.13572 4.41707 4.48701 4.52621 4.57290 4.68885 4.73848 4.79487 4.87986 4.90000 4.99791 5.08286 5.21870 5.25603 5.42656 5.48066 5.56234 5.58948 5.63971 5.66289 5.71656 5.73431 5.92446 5.98510 6.01192 6.15450 6.23672 6.31810 6.35850 6.98773 7.08577 7.09987 7.26587 7.61971 8.00542 8.17997 8.64175 8.99084 9.46313 9.87871 10.85536 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.024776 B = 0.001689 C = 0.001645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.862384 B =16569.471792 C =17017.035781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.135 3.865 3 N -0.302 5.302 4 N -0.361 5.361 5 C 0.096 3.904 6 C 0.101 3.899 7 C -0.288 4.288 8 C 0.600 3.400 9 O -0.535 6.535 10 N -0.699 5.699 11 C 0.109 3.891 12 H 0.135 0.865 13 C -0.162 4.162 14 H 0.118 0.882 15 C 0.067 3.933 16 N -0.483 5.483 17 C 0.031 3.969 18 C 0.455 3.545 19 O -0.558 6.558 20 N -0.593 5.593 21 C -0.303 4.303 22 H 0.119 0.881 23 C 0.041 3.959 24 N -0.883 5.883 25 Si 0.879 3.121 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.270 1.270 29 C 0.061 3.939 30 C -0.169 4.169 31 H 0.118 0.882 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.183 0.817 39 H 0.398 0.602 40 H 0.044 0.956 41 H 0.104 0.896 42 H 0.091 0.909 43 H 0.053 0.947 44 H 0.370 0.630 45 H 0.273 0.727 46 H 0.088 0.912 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.726 30.340 -12.577 33.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.032 4.032 3 N -0.124 5.124 4 N -0.138 5.138 5 C -0.045 4.045 6 C -0.051 4.051 7 C -0.303 4.303 8 C 0.388 3.612 9 O -0.412 6.412 10 N -0.348 5.348 11 C 0.003 3.997 12 H 0.152 0.848 13 C -0.182 4.182 14 H 0.136 0.864 15 C -0.060 4.060 16 N -0.207 5.207 17 C -0.101 4.101 18 C 0.240 3.760 19 O -0.439 6.439 20 N -0.233 5.233 21 C -0.432 4.432 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.523 5.523 25 Si 0.706 3.294 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.195 1.195 29 C -0.068 4.068 30 C -0.189 4.189 31 H 0.136 0.864 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.115 0.885 35 H 0.099 0.901 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.200 0.800 39 H 0.232 0.768 40 H 0.062 0.938 41 H 0.122 0.878 42 H 0.110 0.890 43 H 0.071 0.929 44 H 0.202 0.798 45 H 0.083 0.917 46 H 0.107 0.893 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.095 31.262 -11.806 33.969 hybrid contribution -1.032 -0.962 -1.031 1.747 sum 5.063 30.300 -12.837 33.294 Atomic orbital electron populations 1.20377 0.85450 1.04160 1.03776 1.22514 0.97388 0.88585 0.94724 1.77240 0.85875 1.22590 1.26738 1.48326 1.06290 1.04744 1.54449 1.22025 0.83644 0.94795 1.04065 1.23089 0.98881 0.85419 0.97712 1.20193 0.92165 0.94244 1.23738 1.17181 0.85489 0.83278 0.75227 1.90761 1.16230 1.84069 1.50127 1.45093 1.09357 1.04594 1.75716 1.21773 0.98093 0.77811 1.02063 0.84753 1.24008 1.03510 0.97693 0.93016 0.86376 1.22674 0.97071 0.88426 0.97841 1.65285 1.46725 1.06582 1.02108 1.22094 0.94512 0.93729 0.99769 1.19590 0.85016 0.83292 0.88072 1.90551 1.34423 1.74927 1.44030 1.42205 1.33017 1.21889 1.26172 1.19423 1.19359 1.00685 1.03737 0.86298 1.25025 0.98089 0.95949 0.97109 1.69619 1.40223 1.12691 1.29756 0.86678 0.82169 0.78870 0.81706 1.19650 1.20225 1.19511 1.22657 0.99567 0.90650 0.93876 1.23818 1.01401 0.96055 0.97593 0.86366 0.90021 0.90987 0.88475 0.90066 0.88925 0.88738 0.79992 0.76815 0.93767 0.87819 0.89040 0.92853 0.79756 0.91668 0.89346 0.93560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.71 9.92 36.01 0.36 -0.36 16 2 C 0.14 1.40 7.26 -82.02 -0.60 0.81 16 3 N -0.30 -3.05 12.50 33.90 0.42 -2.63 16 4 N -0.36 -2.47 3.98 -67.60 -0.27 -2.74 16 5 C 0.10 0.22 11.44 59.84 0.68 0.90 16 6 C 0.10 0.62 10.99 -16.56 -0.18 0.44 16 7 C -0.29 -2.73 6.13 -105.07 -0.64 -3.37 16 8 C 0.60 6.60 7.81 -12.52 -0.10 6.50 16 9 O -0.53 -7.70 14.48 5.28 0.08 -7.62 16 10 N -0.70 -6.08 5.55 -54.88 -0.30 -6.38 16 11 C 0.11 1.15 5.98 -67.93 -0.41 0.74 16 12 H 0.13 1.66 7.40 -51.93 -0.38 1.28 16 13 C -0.16 -1.90 7.05 -89.24 -0.63 -2.53 16 14 H 0.12 1.28 8.14 -51.93 -0.42 0.85 16 15 C 0.07 1.03 5.72 -2.19 -0.01 1.02 16 16 N -0.48 -7.67 4.98 -231.42 -1.15 -8.82 16 17 C 0.03 0.52 5.32 -4.98 -0.03 0.49 16 18 C 0.45 10.39 7.63 -10.98 -0.08 10.31 16 19 O -0.56 -14.99 14.80 5.55 0.08 -14.90 16 20 N -0.59 -14.23 5.09 -10.96 -0.06 -14.28 16 21 C -0.30 -8.63 10.16 -14.93 -0.15 -8.79 16 22 H 0.12 3.86 7.39 -52.49 -0.39 3.48 16 23 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 24 N -0.88 -25.95 13.96 55.50 0.77 -25.18 16 25 Si 0.88 19.53 27.73 -169.99 -4.71 14.82 16 26 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 27 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 28 H -0.27 -5.47 6.52 56.52 0.37 -5.10 16 29 C 0.06 0.71 6.26 -2.18 -0.01 0.70 16 30 C -0.17 -1.71 7.05 -89.23 -0.63 -2.34 16 31 H 0.12 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.10 0.98 6.55 -51.93 -0.34 0.64 16 35 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 36 H 0.09 -0.03 8.14 -51.93 -0.42 -0.46 16 37 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 38 H 0.18 0.32 7.46 -52.49 -0.39 -0.07 16 39 H 0.40 2.18 7.75 -40.82 -0.32 1.86 16 40 H 0.04 0.66 7.75 -51.93 -0.40 0.26 16 41 H 0.10 1.88 7.24 -51.93 -0.38 1.51 16 42 H 0.09 1.33 8.08 -51.93 -0.42 0.91 16 43 H 0.05 0.80 7.77 -51.93 -0.40 0.40 16 44 H 0.37 7.80 5.77 -40.82 -0.24 7.56 16 45 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 46 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.05 0.51 8.00 -51.93 -0.42 0.10 16 LS Contribution 392.62 15.07 5.92 5.92 Total: -1.00 -37.93 392.62 -8.37 -46.30 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -6.62 Total: 9.95 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: -2.53 Total: 5.57 kcal Atomic # 7 Polarization: -59.44 SS G_CDS: -0.58 Total: -60.03 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: 0.16 Total: -22.53 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -4.71 Total: 14.82 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -37.93 -8.37 -46.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114053762.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.660 kcal (2) G-P(sol) polarization free energy of solvation -37.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds