Wall clock time and date at job start Sat Apr 11 2020 08:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30448 * 125.98949 * 2 1 4 4 N 1.39934 * 108.89974 * 180.02562 * 3 2 1 5 5 C 1.46496 * 125.75626 * 179.97438 * 4 3 2 6 6 C 1.34266 * 108.48849 * 359.74672 * 4 3 2 7 7 C 1.38042 * 107.41769 * 0.39891 * 6 4 3 8 8 C 1.47420 * 126.41642 * 179.86976 * 7 6 4 9 9 O 1.21600 * 120.00396 * 179.69005 * 8 7 6 10 10 N 1.34786 * 120.00078 * 359.68701 * 8 7 6 11 11 C 1.46497 * 119.99946 * 179.97438 * 10 8 7 12 12 H 1.08998 * 115.51804 * 9.58546 * 11 10 8 13 13 C 1.53005 * 117.40705 * 224.21526 * 11 10 8 14 14 H 1.08998 * 119.52473 * 4.07657 * 13 11 10 15 15 C 1.54375 * 118.12583 * 160.67531 * 13 11 10 16 16 N 1.48558 * 104.59740 * 87.22965 * 15 13 11 17 17 C 1.46896 * 111.00234 * 200.95864 * 16 15 13 18 18 C 1.50700 * 109.46942 * 285.41735 * 17 16 15 19 19 O 1.21293 * 120.00282 * 359.97438 * 18 17 16 20 20 N 1.34777 * 120.00075 * 179.97438 * 18 17 16 21 21 C 1.37104 * 120.00173 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99666 * 359.97438 * 21 20 18 23 23 C 1.38945 * 120.00001 * 180.27893 * 21 20 18 24 24 N 1.31407 * 120.00135 * 179.72366 * 23 21 20 25 25 Si 1.86800 * 120.00194 * 359.72088 * 23 21 20 26 26 H 1.48500 * 109.47210 * 89.99937 * 25 23 21 27 27 H 1.48496 * 109.47530 * 210.00374 * 25 23 21 28 28 H 1.48501 * 109.47312 * 330.00618 * 25 23 21 29 29 C 1.48563 * 104.22188 * 320.51595 * 16 15 13 30 30 C 1.53001 * 117.43955 * 155.00329 * 11 10 8 31 31 H 1.09006 * 119.52773 * 354.30402 * 30 11 10 32 32 H 1.09003 * 109.47088 * 270.00191 * 1 2 3 33 33 H 1.09003 * 109.47025 * 30.00015 * 1 2 3 34 34 H 1.09001 * 109.47287 * 149.99858 * 1 2 3 35 35 H 1.08998 * 109.47107 * 90.02096 * 5 4 3 36 36 H 1.08996 * 109.47420 * 210.01822 * 5 4 3 37 37 H 1.08996 * 109.46855 * 330.02137 * 5 4 3 38 38 H 1.07999 * 126.28922 * 180.24563 * 6 4 3 39 39 H 0.97006 * 119.99456 * 0.02562 * 10 8 7 40 40 H 1.09002 * 110.41126 * 328.44886 * 15 13 11 41 41 H 1.09004 * 110.40624 * 206.00610 * 15 13 11 42 42 H 1.08994 * 109.47346 * 165.42040 * 17 16 15 43 43 H 1.08998 * 109.47279 * 45.41712 * 17 16 15 44 44 H 0.97000 * 120.00140 * 0.02562 * 20 18 17 45 45 H 0.97004 * 120.00486 * 179.97438 * 24 23 21 46 46 H 1.09000 * 110.41438 * 158.26118 * 29 16 15 47 47 H 1.08996 * 110.41012 * 280.70357 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0555 0.0000 4 7 3.6111 0.6443 -0.0006 5 6 4.7787 1.5290 -0.0013 6 6 3.6439 -0.6980 0.0047 7 6 2.3373 -1.1432 -0.0006 8 6 1.8915 -2.5485 -0.0003 9 8 0.7039 -2.8097 0.0004 10 7 2.8004 -3.5438 -0.0009 11 6 2.3574 -4.9402 0.0000 12 1 1.2908 -5.0945 -0.1628 13 6 3.0734 -5.9056 0.9468 14 1 3.8317 -5.5240 1.6305 15 6 2.3654 -7.2288 1.3089 16 7 2.7625 -8.1726 0.2325 17 6 1.8168 -9.2928 0.1393 18 6 2.0436 -10.2386 1.2905 19 8 2.9082 -10.0029 2.1078 20 7 1.2856 -11.3464 1.4118 21 6 1.4915 -12.2066 2.4594 22 1 2.2614 -11.9967 3.1871 23 6 0.7139 -13.3517 2.5812 24 7 0.9148 -14.1789 3.5822 25 14 -0.6172 -13.7151 1.3221 26 1 -0.0443 -14.5223 0.2150 27 1 -1.7175 -14.4735 1.9696 28 1 -1.1481 -12.4385 0.7803 29 6 2.7354 -7.3488 -1.0035 30 6 3.3168 -5.9845 -0.5745 31 1 4.2444 -5.6600 -1.0460 32 1 -0.3633 0.0000 1.0277 33 1 -0.3633 0.8900 -0.5139 34 1 -0.3634 -0.8900 -0.5139 35 1 5.0690 1.7483 1.0262 36 1 5.6055 1.0393 -0.5157 37 1 4.5304 2.4578 -0.5148 38 1 4.5298 -1.3157 0.0094 39 1 3.7478 -3.3354 -0.0011 40 1 1.2840 -7.0921 1.3148 41 1 2.7091 -7.5909 2.2778 42 1 1.9715 -9.8216 -0.8012 43 1 0.7966 -8.9113 0.1781 44 1 0.5944 -11.5352 0.7580 45 1 0.3718 -14.9782 3.6675 46 1 3.3576 -7.8013 -1.7757 47 1 1.7120 -7.2310 -1.3594 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114053762.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:20:38 Heat of formation + Delta-G solvation = 28.843238 kcal Electronic energy + Delta-G solvation = -29102.511364 eV Core-core repulsion = 24901.374977 eV Total energy + Delta-G solvation = -4201.136387 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.45899 -41.35506 -40.21836 -39.50572 -36.37549 -35.80836 -34.92397 -33.90987 -33.65437 -31.42639 -30.33796 -29.40091 -29.15752 -27.00794 -26.30369 -24.20273 -23.10176 -22.03310 -21.48700 -21.29963 -21.13702 -20.68365 -20.13727 -18.71053 -17.85382 -17.55320 -16.99887 -16.81144 -16.78299 -16.29432 -16.22378 -15.62761 -15.56575 -15.22666 -15.03452 -14.82683 -14.72451 -14.40171 -14.33708 -14.08280 -14.02551 -13.82636 -13.38794 -13.35764 -13.13730 -13.02414 -12.99617 -12.93402 -12.48232 -12.43676 -12.37299 -11.97753 -11.92887 -11.83541 -11.48376 -11.07149 -10.92678 -10.40236 -10.38892 -10.22618 -9.92869 -9.56070 -9.35187 -8.39982 -6.00559 0.49040 1.05205 1.31145 1.36262 1.44017 1.45013 1.96606 1.98401 2.23946 2.27658 2.65757 2.81254 3.15698 3.26528 3.35345 3.64436 3.69142 3.70753 3.87368 4.02674 4.08724 4.11867 4.20838 4.33570 4.37161 4.39592 4.42298 4.44834 4.48366 4.56564 4.66271 4.72227 4.73433 4.84449 4.94987 4.96166 4.99591 5.15907 5.16871 5.47397 5.50424 5.54167 5.83223 5.88645 5.90645 6.02672 6.46270 6.61553 6.63142 6.90193 7.26871 7.41741 7.99471 8.77729 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.024776 B = 0.001689 C = 0.001645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.862384 B =16569.471792 C =17017.035781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.114 3.886 3 N -0.334 5.334 4 N -0.358 5.358 5 C 0.085 3.915 6 C 0.127 3.873 7 C -0.320 4.320 8 C 0.599 3.401 9 O -0.579 6.579 10 N -0.682 5.682 11 C 0.118 3.882 12 H 0.116 0.884 13 C -0.172 4.172 14 H 0.127 0.873 15 C 0.066 3.934 16 N -0.508 5.508 17 C 0.042 3.958 18 C 0.452 3.548 19 O -0.606 6.606 20 N -0.594 5.594 21 C -0.327 4.327 22 H 0.055 0.945 23 C -0.015 4.015 24 N -0.935 5.935 25 Si 0.964 3.036 26 H -0.256 1.256 27 H -0.276 1.276 28 H -0.233 1.233 29 C 0.058 3.942 30 C -0.145 4.145 31 H 0.149 0.851 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.128 0.872 37 H 0.093 0.907 38 H 0.232 0.768 39 H 0.417 0.583 40 H 0.041 0.959 41 H 0.061 0.939 42 H 0.125 0.875 43 H 0.078 0.922 44 H 0.389 0.611 45 H 0.279 0.721 46 H 0.107 0.893 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.386 31.897 -16.139 36.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.052 4.052 3 N -0.157 5.157 4 N -0.135 5.135 5 C -0.054 4.054 6 C -0.026 4.026 7 C -0.335 4.335 8 C 0.389 3.611 9 O -0.459 6.459 10 N -0.332 5.332 11 C 0.011 3.989 12 H 0.133 0.867 13 C -0.193 4.193 14 H 0.145 0.855 15 C -0.062 4.062 16 N -0.232 5.232 17 C -0.089 4.089 18 C 0.240 3.760 19 O -0.490 6.490 20 N -0.236 5.236 21 C -0.456 4.456 22 H 0.073 0.927 23 C -0.214 4.214 24 N -0.576 5.576 25 Si 0.784 3.216 26 H -0.180 1.180 27 H -0.201 1.201 28 H -0.156 1.156 29 C -0.069 4.069 30 C -0.164 4.164 31 H 0.166 0.834 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.111 0.889 36 H 0.146 0.854 37 H 0.112 0.888 38 H 0.248 0.752 39 H 0.254 0.746 40 H 0.059 0.941 41 H 0.079 0.921 42 H 0.143 0.857 43 H 0.096 0.904 44 H 0.224 0.776 45 H 0.088 0.912 46 H 0.125 0.875 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.802 32.874 -15.393 36.931 hybrid contribution -1.055 -1.352 0.187 1.725 sum 5.747 31.523 -15.206 35.467 Atomic orbital electron populations 1.20306 0.85698 1.03844 1.03601 1.22704 0.97863 0.89365 0.95315 1.77163 0.87652 1.23045 1.27792 1.48728 1.06123 1.05725 1.52910 1.22447 0.82870 0.94702 1.05409 1.23729 0.99081 0.85419 0.94381 1.20162 0.93669 0.93106 1.26604 1.17444 0.85087 0.84162 0.74414 1.90738 1.18139 1.84738 1.52330 1.44874 1.10132 1.03349 1.74849 1.21509 0.97388 0.78682 1.01350 0.86664 1.23847 1.04116 0.96784 0.94554 0.85550 1.22514 0.97141 0.90321 0.96247 1.65218 1.46772 1.07163 1.04058 1.22011 0.96161 0.93053 0.97693 1.20869 0.83224 0.83139 0.88762 1.90532 1.36300 1.75920 1.46253 1.42037 1.34105 1.21817 1.25614 1.18999 1.19130 1.02839 1.04663 0.92706 1.26095 1.00822 0.94738 0.99699 1.69803 1.41911 1.13491 1.32392 0.85371 0.77648 0.80275 0.78271 1.17991 1.20087 1.15644 1.22782 1.00984 0.90808 0.92287 1.23917 1.01936 0.94916 0.95669 0.83352 0.90153 0.90007 0.89956 0.88893 0.85410 0.88806 0.75167 0.74579 0.94066 0.92061 0.85689 0.90402 0.77561 0.91193 0.87490 0.92307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.45 9.92 71.24 0.71 -0.74 16 2 C 0.11 2.36 7.26 43.52 0.32 2.68 16 3 N -0.33 -6.46 12.50 -46.67 -0.58 -7.04 16 4 N -0.36 -3.96 3.98 -367.80 -1.46 -5.43 16 5 C 0.08 0.10 11.44 127.77 1.46 1.57 16 6 C 0.13 1.14 10.99 84.27 0.93 2.07 16 7 C -0.32 -5.64 6.13 -20.15 -0.12 -5.76 16 8 C 0.60 12.60 7.81 86.66 0.68 13.28 16 9 O -0.58 -16.98 14.48 -4.03 -0.06 -17.04 16 10 N -0.68 -10.18 5.55 -445.80 -2.47 -12.65 16 11 C 0.12 2.25 5.98 44.99 0.27 2.52 16 12 H 0.12 2.75 7.40 -2.39 -0.02 2.73 16 13 C -0.17 -3.80 7.05 -9.90 -0.07 -3.87 16 14 H 0.13 2.55 8.14 -2.39 -0.02 2.53 16 15 C 0.07 2.02 5.72 86.45 0.49 2.52 16 16 N -0.51 -15.32 4.98 -886.06 -4.41 -19.73 16 17 C 0.04 1.33 5.32 85.56 0.46 1.79 16 18 C 0.45 20.89 7.63 87.66 0.67 21.56 16 19 O -0.61 -34.22 14.80 -3.07 -0.05 -34.27 16 20 N -0.59 -28.54 5.09 -306.98 -1.56 -30.10 16 21 C -0.33 -19.47 10.16 84.04 0.85 -18.61 16 22 H 0.05 3.88 7.39 -2.91 -0.02 3.86 16 23 C -0.02 -0.85 5.50 84.93 0.47 -0.38 16 24 N -0.94 -57.06 13.96 21.66 0.30 -56.76 16 25 Si 0.96 39.40 27.73 68.60 1.90 41.30 16 26 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 27 H -0.28 -11.20 7.11 99.48 0.71 -10.49 16 28 H -0.23 -8.08 6.52 99.48 0.65 -7.43 16 29 C 0.06 1.17 6.26 86.45 0.54 1.72 16 30 C -0.14 -2.44 7.05 -9.90 -0.07 -2.51 16 31 H 0.15 1.67 8.14 -2.38 -0.02 1.65 16 32 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.08 1.80 6.55 -2.39 -0.02 1.78 16 35 H 0.09 -0.05 8.14 -2.39 -0.02 -0.07 16 36 H 0.13 -0.71 8.14 -2.39 -0.02 -0.73 16 37 H 0.09 0.17 8.14 -2.39 -0.02 0.15 16 38 H 0.23 -0.49 7.46 -2.91 -0.02 -0.52 16 39 H 0.42 2.89 7.75 -92.70 -0.72 2.17 16 40 H 0.04 1.25 7.75 -2.39 -0.02 1.23 16 41 H 0.06 2.38 7.24 -2.39 -0.02 2.36 16 42 H 0.13 3.14 8.08 -2.39 -0.02 3.12 16 43 H 0.08 2.11 7.77 -2.39 -0.02 2.09 16 44 H 0.39 15.49 5.77 -92.71 -0.53 14.96 16 45 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 46 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 47 H 0.06 1.07 8.00 -2.39 -0.02 1.05 16 Total: -1.00 -92.22 392.62 -1.10 -93.32 By element: Atomic # 1 Polarization: 30.87 SS G_CDS: -0.29 Total: 30.59 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: 7.57 Total: 17.81 kcal Atomic # 7 Polarization: -121.52 SS G_CDS: -10.19 Total: -131.71 kcal Atomic # 8 Polarization: -51.20 SS G_CDS: -0.10 Total: -51.31 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 1.90 Total: 41.30 kcal Total: -92.22 -1.10 -93.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114053762.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.164 kcal (2) G-P(sol) polarization free energy of solvation -92.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds