Wall clock time and date at job start Sat Apr 11 2020 08:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33325 * 126.10595 * 2 1 4 4 C 1.30854 * 109.68481 * 180.02562 * 3 2 1 5 5 N 1.34495 * 109.16302 * 0.02562 * 4 3 2 6 6 C 1.46506 * 126.46803 * 179.73473 * 5 4 3 7 7 C 1.36657 * 126.10900 * 180.02562 * 2 1 3 8 8 C 1.46765 * 126.84605 * 0.02562 * 7 2 1 9 9 O 1.21682 * 120.00017 * 87.01857 * 8 7 2 10 10 N 1.34777 * 120.00098 * 267.02422 * 8 7 2 11 11 C 1.46493 * 120.00338 * 185.29198 * 10 8 7 12 12 H 1.09006 * 115.51317 * 350.58145 * 11 10 8 13 13 C 1.53005 * 117.44810 * 205.16146 * 11 10 8 14 14 H 1.08994 * 119.52169 * 4.08752 * 13 11 10 15 15 C 1.54373 * 118.12866 * 159.12847 * 13 11 10 16 16 N 1.48568 * 104.59486 * 87.23172 * 15 13 11 17 17 C 1.46900 * 111.00067 * 200.95867 * 16 15 13 18 18 C 1.50701 * 109.47249 * 169.99712 * 17 16 15 19 19 O 1.21287 * 119.99599 * 0.02562 * 18 17 16 20 20 N 1.34775 * 120.00070 * 179.97438 * 18 17 16 21 21 C 1.37095 * 120.00002 * 180.02562 * 20 18 17 22 22 H 1.08007 * 119.99734 * 359.97438 * 21 20 18 23 23 C 1.38943 * 119.99997 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00058 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 120.00075 * 359.97438 * 23 21 20 26 26 H 1.48502 * 109.47285 * 90.00049 * 25 23 21 27 27 H 1.48497 * 109.47165 * 209.99888 * 25 23 21 28 28 H 1.48496 * 109.47110 * 329.99712 * 25 23 21 29 29 C 1.48561 * 104.21866 * 320.51654 * 16 15 13 30 30 C 1.52995 * 117.44658 * 136.00023 * 11 10 8 31 31 H 1.09005 * 119.52921 * 355.91017 * 30 11 10 32 32 H 1.08994 * 109.47670 * 89.97061 * 1 2 3 33 33 H 1.09005 * 109.46659 * 209.97638 * 1 2 3 34 34 H 1.09001 * 109.47162 * 329.96960 * 1 2 3 35 35 H 1.07998 * 125.41422 * 179.97438 * 4 3 2 36 36 H 1.09003 * 109.46484 * 85.17207 * 6 5 4 37 37 H 1.09001 * 109.46686 * 205.16614 * 6 5 4 38 38 H 1.08996 * 109.47166 * 325.16814 * 6 5 4 39 39 H 0.97005 * 120.00042 * 5.29096 * 10 8 7 40 40 H 1.08993 * 110.41328 * 206.00852 * 15 13 11 41 41 H 1.09004 * 110.41227 * 328.45548 * 15 13 11 42 42 H 1.08997 * 109.47279 * 290.00104 * 17 16 15 43 43 H 1.09004 * 109.46943 * 49.99631 * 17 16 15 44 44 H 0.96996 * 119.99664 * 359.97438 * 20 18 17 45 45 H 0.96999 * 120.00405 * 180.02562 * 24 23 21 46 46 H 1.08997 * 110.40686 * 158.26313 * 29 16 15 47 47 H 1.09003 * 110.40980 * 280.58198 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2926 1.0772 0.0000 4 6 3.5478 0.7073 -0.0006 5 7 3.6121 -0.6362 -0.0015 6 6 4.8306 -1.4496 -0.0078 7 6 2.3123 -1.1040 -0.0005 8 6 1.8821 -2.5072 -0.0016 9 8 1.6518 -3.0721 -1.0545 10 7 1.7421 -3.1701 1.1634 11 6 1.4259 -4.6005 1.1590 12 1 1.1629 -5.0202 0.1880 13 6 0.7157 -5.1697 2.3890 14 1 0.4086 -4.4980 3.1905 15 6 -0.0544 -6.4987 2.2347 16 7 0.9643 -7.5522 2.4788 17 6 0.5441 -8.8351 1.8997 18 6 1.6935 -9.8085 1.9477 19 8 2.7579 -9.4672 2.4185 20 7 1.5384 -11.0586 1.4685 21 6 2.5840 -11.9443 1.5127 22 1 3.5321 -11.6401 1.9311 23 6 2.4239 -13.2332 1.0191 24 7 3.4263 -14.0820 1.0610 25 14 0.7839 -13.7595 0.2960 26 1 0.7681 -13.4669 -1.1598 27 1 0.5933 -15.2166 0.5101 28 1 -0.3133 -13.0136 0.9628 29 6 2.1868 -7.0401 1.8078 30 6 2.1992 -5.4967 2.1284 31 1 2.9964 -5.0686 2.7361 32 1 -0.3634 0.0005 -1.0276 33 1 -0.3633 -0.8903 0.5135 34 1 -0.3633 0.8897 0.5143 35 1 4.3969 1.3746 -0.0011 36 1 5.1857 -1.5798 1.0145 37 1 4.6142 -2.4247 -0.4442 38 1 5.5983 -0.9495 -0.5982 39 1 1.8507 -2.7001 2.0050 40 1 -0.8528 -6.5634 2.9738 41 1 -0.4599 -6.5883 1.2269 42 1 -0.2942 -9.2343 2.4707 43 1 0.2391 -8.6838 0.8642 44 1 0.6868 -11.3319 1.0930 45 1 3.3147 -14.9817 0.7161 46 1 3.0759 -7.5125 2.2255 47 1 2.1329 -7.2163 0.7334 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114431990.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:21:07 Heat of formation + Delta-G solvation = 50.097582 kcal Electronic energy + Delta-G solvation = -29634.637290 eV Core-core repulsion = 25434.422560 eV Total energy + Delta-G solvation = -4200.214729 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 2.36 seconds Orbital eigenvalues (eV) -42.63415 -40.44164 -39.23596 -38.11834 -35.28962 -34.91548 -34.00579 -32.87878 -31.73272 -31.51068 -28.91028 -28.23410 -27.73352 -26.53780 -24.79073 -23.67969 -22.03747 -21.19288 -21.09445 -20.39633 -20.13700 -19.41069 -18.27159 -18.07652 -17.24771 -16.61111 -16.11255 -15.91623 -15.52834 -15.23709 -15.19850 -14.83524 -14.56198 -14.27053 -13.97800 -13.77752 -13.62252 -13.45501 -13.30070 -13.12044 -13.01217 -12.73630 -12.56527 -12.54816 -12.39752 -12.10445 -11.93345 -11.49051 -11.36928 -11.12059 -11.01173 -10.87474 -10.61980 -10.30740 -10.17351 -10.04908 -10.01172 -9.59672 -9.09503 -8.83425 -8.57683 -8.24995 -8.12477 -6.35001 -3.86655 1.25758 1.69259 2.33803 2.56031 2.75154 3.00388 3.04575 3.13118 3.49678 3.67189 3.94179 4.06316 4.07362 4.16661 4.23938 4.41016 4.55618 4.58904 4.61748 4.64329 4.78400 4.81311 4.91684 5.02575 5.12003 5.17767 5.34728 5.39634 5.43569 5.55616 5.56212 5.57710 5.63253 5.71311 5.73275 5.85080 5.94517 5.97522 6.13494 6.18005 6.49214 6.60724 6.96977 6.98694 7.07399 7.53145 7.53650 7.67723 8.09906 8.55007 8.90563 9.37713 9.77139 10.77849 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021241 B = 0.001885 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.907460 B =14853.814593 C =15246.104438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.061 3.939 3 N -0.492 5.492 4 C 0.204 3.796 5 N -0.437 5.437 6 C 0.066 3.934 7 C -0.083 4.083 8 C 0.603 3.397 9 O -0.516 6.516 10 N -0.687 5.687 11 C 0.096 3.904 12 H 0.136 0.864 13 C -0.167 4.167 14 H 0.118 0.882 15 C 0.060 3.940 16 N -0.487 5.487 17 C 0.031 3.969 18 C 0.450 3.550 19 O -0.563 6.563 20 N -0.587 5.587 21 C -0.305 4.305 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.880 5.880 25 Si 0.879 3.121 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.269 1.269 29 C 0.066 3.934 30 C -0.160 4.160 31 H 0.122 0.878 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.213 0.787 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.405 0.595 40 H 0.088 0.912 41 H 0.047 0.953 42 H 0.094 0.906 43 H 0.052 0.948 44 H 0.371 0.629 45 H 0.274 0.726 46 H 0.122 0.878 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.491 27.460 -0.373 27.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.072 4.072 3 N -0.211 5.211 4 C -0.078 4.078 5 N -0.120 5.120 6 C -0.076 4.076 7 C -0.200 4.200 8 C 0.387 3.613 9 O -0.389 6.389 10 N -0.336 5.336 11 C -0.009 4.009 12 H 0.153 0.847 13 C -0.187 4.187 14 H 0.136 0.864 15 C -0.068 4.068 16 N -0.211 5.211 17 C -0.101 4.101 18 C 0.236 3.764 19 O -0.446 6.446 20 N -0.226 5.226 21 C -0.434 4.434 22 H 0.138 0.862 23 C -0.161 4.161 24 N -0.519 5.519 25 Si 0.706 3.294 26 H -0.196 1.196 27 H -0.201 1.201 28 H -0.194 1.194 29 C -0.062 4.062 30 C -0.180 4.180 31 H 0.140 0.860 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.229 0.771 36 H 0.104 0.896 37 H 0.108 0.892 38 H 0.114 0.886 39 H 0.240 0.760 40 H 0.107 0.893 41 H 0.065 0.935 42 H 0.113 0.887 43 H 0.070 0.930 44 H 0.204 0.796 45 H 0.084 0.916 46 H 0.140 0.860 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.865 27.610 -0.316 27.881 hybrid contribution -0.876 -1.066 -0.987 1.696 sum -4.742 26.545 -1.303 26.996 Atomic orbital electron populations 1.20154 0.86937 1.03025 1.03091 1.20893 0.96482 0.86750 1.03065 1.70038 1.00393 1.30018 1.20636 1.25043 0.97254 0.81575 1.03944 1.45312 1.05842 1.07813 1.53051 1.22231 0.84500 0.96571 1.04336 1.20578 0.85070 0.94672 1.19643 1.16826 0.77328 0.83319 0.83832 1.90882 1.49042 1.67723 1.31249 1.45298 1.70924 1.08956 1.08457 1.21950 1.02531 0.79605 0.96865 0.84676 1.23768 0.95971 0.99195 0.99786 0.86382 1.22702 0.95037 0.88664 1.00390 1.65385 1.02676 1.00573 1.52462 1.22143 0.98415 0.91035 0.98505 1.19576 0.89451 0.83131 0.84238 1.90486 1.28335 1.76904 1.48874 1.42191 1.13534 1.11330 1.55561 1.19422 0.93747 0.91510 1.38717 0.86223 1.25046 0.97656 0.95746 0.97688 1.69617 1.30695 1.06152 1.45465 0.86675 0.83415 0.79315 0.80032 1.19613 1.20113 1.19431 1.23461 0.96715 0.89125 0.96861 1.24802 0.95054 0.95585 1.02582 0.86037 0.90557 0.91254 0.90359 0.77067 0.89616 0.89233 0.88637 0.76035 0.89331 0.93499 0.88749 0.93005 0.79634 0.91561 0.86001 0.93885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.62 10.24 36.00 0.37 -0.25 16 2 C 0.06 0.64 7.15 -82.52 -0.59 0.05 16 3 N -0.49 -5.16 11.20 -10.65 -0.12 -5.28 16 4 C 0.20 1.53 12.52 -90.58 -1.13 0.40 16 5 N -0.44 -3.42 3.17 -121.97 -0.39 -3.81 16 6 C 0.07 0.31 11.07 59.85 0.66 0.97 16 7 C -0.08 -0.85 6.66 -82.15 -0.55 -1.40 16 8 C 0.60 6.80 6.73 -12.81 -0.09 6.72 16 9 O -0.52 -7.84 16.68 5.20 0.09 -7.76 16 10 N -0.69 -6.21 5.56 -55.09 -0.31 -6.52 16 11 C 0.10 1.02 5.94 -67.93 -0.40 0.62 16 12 H 0.14 1.70 7.38 -51.93 -0.38 1.32 16 13 C -0.17 -1.69 6.97 -89.31 -0.62 -2.32 16 14 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 15 C 0.06 0.70 6.30 -2.18 -0.01 0.68 16 16 N -0.49 -7.52 5.34 -229.19 -1.22 -8.75 16 17 C 0.03 0.50 5.55 -4.98 -0.03 0.48 16 18 C 0.45 9.94 7.50 -10.99 -0.08 9.86 16 19 O -0.56 -14.39 13.24 5.55 0.07 -14.32 16 20 N -0.59 -13.73 5.09 -10.96 -0.06 -13.78 16 21 C -0.31 -8.49 10.16 -14.94 -0.15 -8.64 16 22 H 0.12 3.80 7.39 -52.48 -0.39 3.41 16 23 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 24 N -0.88 -25.42 13.96 55.50 0.77 -24.64 16 25 Si 0.88 19.16 27.74 -169.99 -4.71 14.45 16 26 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 27 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 28 H -0.27 -5.33 6.52 56.52 0.37 -4.96 16 29 C 0.07 1.03 5.18 -0.37 0.00 1.03 16 30 C -0.16 -1.86 7.32 -87.50 -0.64 -2.50 16 31 H 0.12 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.52 7.94 -51.93 -0.41 0.11 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.21 0.67 8.06 -52.49 -0.42 0.25 16 36 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.09 0.56 7.79 -51.93 -0.40 0.16 16 38 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 39 H 0.40 2.75 8.81 -40.82 -0.36 2.39 16 40 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.05 0.52 7.82 -51.93 -0.41 0.12 16 42 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 43 H 0.05 0.75 7.88 -51.93 -0.41 0.34 16 44 H 0.37 7.63 5.76 -40.82 -0.24 7.39 16 45 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 46 H 0.12 2.31 6.05 -51.93 -0.31 2.00 16 47 H 0.04 0.69 7.99 -51.93 -0.42 0.28 16 LS Contribution 393.79 15.07 5.93 5.93 Total: -1.00 -36.16 393.79 -10.00 -46.16 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: -6.70 Total: 11.58 kcal Atomic # 6 Polarization: 10.10 SS G_CDS: -3.37 Total: 6.73 kcal Atomic # 7 Polarization: -61.46 SS G_CDS: -1.32 Total: -62.78 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: 0.16 Total: -22.08 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -4.71 Total: 14.45 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.16 -10.00 -46.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114431990.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.260 kcal (2) G-P(sol) polarization free energy of solvation -36.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.36 seconds