Wall clock time and date at job start Sat Apr 11 2020 08:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33325 * 126.10595 * 2 1 4 4 C 1.30854 * 109.68481 * 180.02562 * 3 2 1 5 5 N 1.34495 * 109.16302 * 0.02562 * 4 3 2 6 6 C 1.46506 * 126.46803 * 179.73473 * 5 4 3 7 7 C 1.36657 * 126.10900 * 180.02562 * 2 1 3 8 8 C 1.46765 * 126.84605 * 0.02562 * 7 2 1 9 9 O 1.21682 * 120.00017 * 87.01857 * 8 7 2 10 10 N 1.34777 * 120.00098 * 267.02422 * 8 7 2 11 11 C 1.46493 * 120.00338 * 185.29198 * 10 8 7 12 12 H 1.09006 * 115.51317 * 350.58145 * 11 10 8 13 13 C 1.53005 * 117.44810 * 205.16146 * 11 10 8 14 14 H 1.08994 * 119.52169 * 4.08752 * 13 11 10 15 15 C 1.54373 * 118.12866 * 159.12847 * 13 11 10 16 16 N 1.48568 * 104.59486 * 87.23172 * 15 13 11 17 17 C 1.46900 * 111.00067 * 200.95867 * 16 15 13 18 18 C 1.50701 * 109.47249 * 169.99712 * 17 16 15 19 19 O 1.21287 * 119.99599 * 0.02562 * 18 17 16 20 20 N 1.34775 * 120.00070 * 179.97438 * 18 17 16 21 21 C 1.37095 * 120.00002 * 180.02562 * 20 18 17 22 22 H 1.08007 * 119.99734 * 359.97438 * 21 20 18 23 23 C 1.38943 * 119.99997 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00058 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 120.00075 * 359.97438 * 23 21 20 26 26 H 1.48502 * 109.47285 * 90.00049 * 25 23 21 27 27 H 1.48497 * 109.47165 * 209.99888 * 25 23 21 28 28 H 1.48496 * 109.47110 * 329.99712 * 25 23 21 29 29 C 1.48561 * 104.21866 * 320.51654 * 16 15 13 30 30 C 1.52995 * 117.44658 * 136.00023 * 11 10 8 31 31 H 1.09005 * 119.52921 * 355.91017 * 30 11 10 32 32 H 1.08994 * 109.47670 * 89.97061 * 1 2 3 33 33 H 1.09005 * 109.46659 * 209.97638 * 1 2 3 34 34 H 1.09001 * 109.47162 * 329.96960 * 1 2 3 35 35 H 1.07998 * 125.41422 * 179.97438 * 4 3 2 36 36 H 1.09003 * 109.46484 * 85.17207 * 6 5 4 37 37 H 1.09001 * 109.46686 * 205.16614 * 6 5 4 38 38 H 1.08996 * 109.47166 * 325.16814 * 6 5 4 39 39 H 0.97005 * 120.00042 * 5.29096 * 10 8 7 40 40 H 1.08993 * 110.41328 * 206.00852 * 15 13 11 41 41 H 1.09004 * 110.41227 * 328.45548 * 15 13 11 42 42 H 1.08997 * 109.47279 * 290.00104 * 17 16 15 43 43 H 1.09004 * 109.46943 * 49.99631 * 17 16 15 44 44 H 0.96996 * 119.99664 * 359.97438 * 20 18 17 45 45 H 0.96999 * 120.00405 * 180.02562 * 24 23 21 46 46 H 1.08997 * 110.40686 * 158.26313 * 29 16 15 47 47 H 1.09003 * 110.40980 * 280.58198 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2926 1.0772 0.0000 4 6 3.5478 0.7073 -0.0006 5 7 3.6121 -0.6362 -0.0015 6 6 4.8306 -1.4496 -0.0078 7 6 2.3123 -1.1040 -0.0005 8 6 1.8821 -2.5072 -0.0016 9 8 1.6518 -3.0721 -1.0545 10 7 1.7421 -3.1701 1.1634 11 6 1.4259 -4.6005 1.1590 12 1 1.1629 -5.0202 0.1880 13 6 0.7157 -5.1697 2.3890 14 1 0.4086 -4.4980 3.1905 15 6 -0.0544 -6.4987 2.2347 16 7 0.9643 -7.5522 2.4788 17 6 0.5441 -8.8351 1.8997 18 6 1.6935 -9.8085 1.9477 19 8 2.7579 -9.4672 2.4185 20 7 1.5384 -11.0586 1.4685 21 6 2.5840 -11.9443 1.5127 22 1 3.5321 -11.6401 1.9311 23 6 2.4239 -13.2332 1.0191 24 7 3.4263 -14.0820 1.0610 25 14 0.7839 -13.7595 0.2960 26 1 0.7681 -13.4669 -1.1598 27 1 0.5933 -15.2166 0.5101 28 1 -0.3133 -13.0136 0.9628 29 6 2.1868 -7.0401 1.8078 30 6 2.1992 -5.4967 2.1284 31 1 2.9964 -5.0686 2.7361 32 1 -0.3634 0.0005 -1.0276 33 1 -0.3633 -0.8903 0.5135 34 1 -0.3633 0.8897 0.5143 35 1 4.3969 1.3746 -0.0011 36 1 5.1857 -1.5798 1.0145 37 1 4.6142 -2.4247 -0.4442 38 1 5.5983 -0.9495 -0.5982 39 1 1.8507 -2.7001 2.0050 40 1 -0.8528 -6.5634 2.9738 41 1 -0.4599 -6.5883 1.2269 42 1 -0.2942 -9.2343 2.4707 43 1 0.2391 -8.6838 0.8642 44 1 0.6868 -11.3319 1.0930 45 1 3.3147 -14.9817 0.7161 46 1 3.0759 -7.5125 2.2255 47 1 2.1329 -7.2163 0.7334 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114431990.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:21:06 Heat of formation + Delta-G solvation = 21.581823 kcal Electronic energy + Delta-G solvation = -29635.873826 eV Core-core repulsion = 25434.422560 eV Total energy + Delta-G solvation = -4201.451265 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.27410 -41.46834 -40.45871 -39.59485 -36.49853 -35.83504 -35.48470 -33.96119 -33.71039 -32.22321 -29.65632 -29.26253 -29.00846 -27.14094 -26.43690 -24.68016 -23.11474 -22.11979 -21.77918 -21.41059 -21.23429 -20.91072 -20.13224 -18.80780 -18.14363 -17.65796 -17.25996 -16.85004 -16.70574 -16.38855 -16.32573 -16.23580 -15.66382 -15.23119 -15.04313 -14.89607 -14.87683 -14.50157 -14.41614 -14.13637 -14.02303 -13.79350 -13.60770 -13.34271 -13.26120 -13.22681 -13.13126 -13.00363 -12.56663 -12.45724 -12.34986 -12.03867 -11.97658 -11.75262 -11.50419 -11.16662 -11.01617 -10.66342 -10.32600 -10.25154 -9.94746 -9.51339 -9.41453 -8.42670 -6.03404 0.59939 0.92633 1.29354 1.34130 1.43269 1.57997 1.91962 1.92306 2.04645 2.21606 2.54421 2.73517 3.13314 3.15473 3.40710 3.57217 3.60273 3.64050 3.74996 3.78332 4.00837 4.06483 4.14498 4.23363 4.24664 4.30158 4.34348 4.47467 4.50924 4.57860 4.60122 4.72134 4.75347 4.81071 4.94356 4.95306 5.08458 5.11115 5.19163 5.29098 5.49413 5.51304 5.78360 5.86906 6.00682 6.08052 6.20423 6.57425 6.85232 6.86617 6.91056 7.37183 7.93702 8.74691 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021241 B = 0.001885 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.907460 B =14853.814593 C =15246.104438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.048 3.952 3 N -0.527 5.527 4 C 0.217 3.783 5 N -0.437 5.437 6 C 0.062 3.938 7 C -0.105 4.105 8 C 0.610 3.390 9 O -0.562 6.562 10 N -0.669 5.669 11 C 0.103 3.897 12 H 0.116 0.884 13 C -0.143 4.143 14 H 0.148 0.852 15 C 0.058 3.942 16 N -0.504 5.504 17 C 0.041 3.959 18 C 0.448 3.552 19 O -0.605 6.605 20 N -0.590 5.590 21 C -0.326 4.326 22 H 0.057 0.943 23 C -0.015 4.015 24 N -0.933 5.933 25 Si 0.963 3.037 26 H -0.259 1.259 27 H -0.275 1.275 28 H -0.230 1.230 29 C 0.065 3.935 30 C -0.165 4.165 31 H 0.134 0.866 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.254 0.746 36 H 0.104 0.896 37 H 0.069 0.931 38 H 0.123 0.877 39 H 0.419 0.581 40 H 0.113 0.887 41 H 0.056 0.944 42 H 0.126 0.874 43 H 0.079 0.921 44 H 0.389 0.611 45 H 0.279 0.721 46 H 0.078 0.922 47 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.306 29.555 -0.178 30.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.085 4.085 3 N -0.246 5.246 4 C -0.065 4.065 5 N -0.120 5.120 6 C -0.079 4.079 7 C -0.221 4.221 8 C 0.395 3.605 9 O -0.439 6.439 10 N -0.318 5.318 11 C -0.003 4.003 12 H 0.134 0.866 13 C -0.163 4.163 14 H 0.165 0.835 15 C -0.069 4.069 16 N -0.229 5.229 17 C -0.090 4.090 18 C 0.236 3.764 19 O -0.489 6.489 20 N -0.232 5.232 21 C -0.455 4.455 22 H 0.075 0.925 23 C -0.214 4.214 24 N -0.574 5.574 25 Si 0.783 3.217 26 H -0.184 1.184 27 H -0.200 1.200 28 H -0.153 1.153 29 C -0.063 4.063 30 C -0.186 4.186 31 H 0.151 0.849 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.105 0.895 35 H 0.270 0.730 36 H 0.122 0.878 37 H 0.088 0.912 38 H 0.141 0.859 39 H 0.257 0.743 40 H 0.131 0.869 41 H 0.074 0.926 42 H 0.144 0.856 43 H 0.096 0.904 44 H 0.225 0.775 45 H 0.089 0.911 46 H 0.096 0.904 47 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -6.686 29.738 -0.075 30.480 hybrid contribution 0.185 -1.614 -0.992 1.904 sum -6.501 28.123 -1.066 28.884 Atomic orbital electron populations 1.20194 0.86194 1.03729 1.03054 1.21232 0.97365 0.86945 1.02951 1.70046 1.01734 1.30451 1.22355 1.25872 0.97587 0.81790 1.01281 1.45512 1.05774 1.08247 1.52427 1.22456 0.83916 0.95623 1.05941 1.20436 0.86382 0.93846 1.21470 1.16962 0.76383 0.83649 0.83477 1.90857 1.51257 1.68892 1.32904 1.45115 1.69812 1.08221 1.08659 1.21688 1.02363 0.80058 0.96224 0.86643 1.23883 0.94028 0.98773 0.99625 0.83455 1.22843 0.94539 0.87712 1.01786 1.65376 1.03654 1.01235 1.52636 1.22102 0.96024 0.90011 1.00877 1.20812 0.90507 0.83281 0.81766 1.90496 1.30783 1.77718 1.49922 1.42025 1.13202 1.11307 1.56632 1.18989 0.93244 0.93280 1.40037 0.92507 1.26106 1.02890 0.94943 0.97476 1.69798 1.33943 1.06867 1.46771 0.85389 0.77821 0.78969 0.79523 1.18352 1.19972 1.15345 1.23206 0.95602 0.91905 0.95597 1.24594 0.96958 0.93120 1.03885 0.84856 0.90931 0.90673 0.89493 0.73024 0.87752 0.91229 0.85852 0.74333 0.86906 0.92559 0.85620 0.90368 0.77517 0.91148 0.90366 0.95295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.18 10.24 71.23 0.73 -0.45 16 2 C 0.05 0.97 7.15 41.96 0.30 1.27 16 3 N -0.53 -10.30 11.20 -187.60 -2.10 -12.40 16 4 C 0.22 2.75 12.52 180.33 2.26 5.01 16 5 N -0.44 -6.10 3.17 -539.81 -1.71 -7.82 16 6 C 0.06 0.47 11.07 127.77 1.41 1.88 16 7 C -0.10 -2.04 6.66 40.01 0.27 -1.78 16 8 C 0.61 13.48 6.73 86.47 0.58 14.06 16 9 O -0.56 -17.39 16.68 -4.29 -0.07 -17.46 16 10 N -0.67 -11.11 5.56 -446.43 -2.48 -13.59 16 11 C 0.10 2.05 5.94 44.99 0.27 2.31 16 12 H 0.12 2.87 7.38 -2.38 -0.02 2.85 16 13 C -0.14 -2.47 6.97 -9.95 -0.07 -2.54 16 14 H 0.15 1.77 8.14 -2.39 -0.02 1.75 16 15 C 0.06 1.15 6.30 86.45 0.54 1.69 16 16 N -0.50 -14.79 5.34 -879.03 -4.69 -19.48 16 17 C 0.04 1.26 5.55 85.56 0.47 1.73 16 18 C 0.45 20.05 7.50 87.66 0.66 20.70 16 19 O -0.60 -32.63 13.24 -3.05 -0.04 -32.67 16 20 N -0.59 -27.69 5.09 -306.99 -1.56 -29.25 16 21 C -0.33 -19.02 10.16 84.04 0.85 -18.17 16 22 H 0.06 3.94 7.39 -2.91 -0.02 3.92 16 23 C -0.02 -0.86 5.50 84.92 0.47 -0.39 16 24 N -0.93 -56.18 13.96 21.66 0.30 -55.88 16 25 Si 0.96 38.74 27.74 68.60 1.90 40.65 16 26 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 27 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 28 H -0.23 -7.76 6.52 99.48 0.65 -7.11 16 29 C 0.06 2.07 5.18 87.62 0.45 2.52 16 30 C -0.17 -3.67 7.32 -8.77 -0.06 -3.74 16 31 H 0.13 2.63 8.14 -2.38 -0.02 2.61 16 32 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.07 1.06 7.94 -2.38 -0.02 1.04 16 34 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.25 0.66 8.06 -2.91 -0.02 0.64 16 36 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 37 H 0.07 0.84 7.79 -2.39 -0.02 0.83 16 38 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 39 H 0.42 4.72 8.81 -92.70 -0.82 3.90 16 40 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.06 1.05 7.82 -2.38 -0.02 1.03 16 42 H 0.13 3.12 8.14 -2.39 -0.02 3.10 16 43 H 0.08 2.02 7.88 -2.39 -0.02 2.01 16 44 H 0.39 15.14 5.76 -92.71 -0.53 14.61 16 45 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 46 H 0.08 3.18 6.05 -2.39 -0.01 3.17 16 47 H 0.03 0.97 7.99 -2.39 -0.02 0.95 16 Total: -1.00 -87.04 393.79 -1.71 -88.75 By element: Atomic # 1 Polarization: 35.42 SS G_CDS: -0.39 Total: 35.04 kcal Atomic # 6 Polarization: 14.98 SS G_CDS: 9.13 Total: 24.12 kcal Atomic # 7 Polarization: -126.17 SS G_CDS: -12.25 Total: -138.42 kcal Atomic # 8 Polarization: -50.02 SS G_CDS: -0.11 Total: -50.13 kcal Atomic # 14 Polarization: 38.74 SS G_CDS: 1.90 Total: 40.65 kcal Total: -87.04 -1.71 -88.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114431990.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.328 kcal (2) G-P(sol) polarization free energy of solvation -87.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds