Wall clock time and date at job start Sat Apr 11 2020 08:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30859 * 125.42197 * 2 1 4 4 C 1.33316 * 109.69021 * 180.02562 * 3 2 1 5 5 C 1.50697 * 126.10732 * 179.97438 * 4 3 2 6 6 C 1.36668 * 107.78656 * 359.97438 * 4 3 2 7 7 C 1.46762 * 126.84598 * 180.26373 * 6 4 3 8 8 O 1.21683 * 120.00069 * 359.71038 * 7 6 4 9 9 N 1.34771 * 119.99730 * 179.70832 * 7 6 4 10 10 C 1.46504 * 119.99637 * 180.02562 * 9 7 6 11 11 H 1.08992 * 115.51953 * 9.41452 * 10 9 7 12 12 C 1.53007 * 117.44128 * 223.99502 * 10 9 7 13 13 H 1.08994 * 119.52492 * 4.09217 * 12 10 9 14 14 C 1.54428 * 118.09502 * 160.62088 * 12 10 9 15 15 N 1.48562 * 104.53806 * 87.32968 * 14 12 10 16 16 C 1.46892 * 111.00052 * 200.94331 * 15 14 12 17 17 C 1.50702 * 109.47498 * 285.42129 * 16 15 14 18 18 O 1.21298 * 119.99709 * 359.97438 * 17 16 15 19 19 N 1.34776 * 119.99945 * 179.97438 * 17 16 15 20 20 C 1.37102 * 119.99423 * 179.97438 * 19 17 16 21 21 H 1.07991 * 120.00546 * 0.02562 * 20 19 17 22 22 C 1.38950 * 119.99731 * 179.97438 * 20 19 17 23 23 N 1.31416 * 119.99876 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00142 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.46978 * 60.00138 * 24 22 20 26 26 H 1.48497 * 109.47020 * 180.02562 * 24 22 20 27 27 H 1.48493 * 109.46867 * 300.00211 * 24 22 20 28 28 C 1.48560 * 104.22194 * 320.50431 * 15 14 12 29 29 C 1.53000 * 117.44225 * 154.84032 * 10 9 7 30 30 H 1.08998 * 119.52949 * 354.34780 * 29 10 9 31 31 N 1.34497 * 125.41786 * 180.02562 * 2 1 3 32 32 H 0.96997 * 126.47650 * 359.96613 * 31 2 1 33 33 H 1.09002 * 109.47379 * 269.95980 * 1 2 3 34 34 H 1.08994 * 109.47480 * 29.96426 * 1 2 3 35 35 H 1.09010 * 109.47067 * 149.96520 * 1 2 3 36 36 H 1.08999 * 109.47361 * 269.99721 * 5 4 3 37 37 H 1.08997 * 109.47229 * 30.00181 * 5 4 3 38 38 H 1.09000 * 109.46675 * 149.99847 * 5 4 3 39 39 H 0.96995 * 120.00741 * 0.02562 * 9 7 6 40 40 H 1.08999 * 110.45162 * 328.56288 * 14 12 10 41 41 H 1.09001 * 110.52587 * 206.13906 * 14 12 10 42 42 H 1.09004 * 109.47476 * 45.42194 * 16 15 14 43 43 H 1.09002 * 109.47008 * 165.42020 * 16 15 14 44 44 H 0.96994 * 120.00528 * 0.02562 * 19 17 16 45 45 H 0.97004 * 120.00031 * 179.97438 * 23 22 20 46 46 H 1.08992 * 110.40742 * 280.70311 * 28 15 14 47 47 H 1.09000 * 110.40889 * 158.25877 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7049 -0.0006 5 6 4.7335 1.6360 -0.0013 6 6 3.5976 -0.6609 -0.0004 7 6 4.8029 -1.4983 0.0046 8 8 5.9038 -0.9800 0.0038 9 7 4.6902 -2.8413 0.0101 10 6 5.8934 -3.6772 0.0156 11 1 6.8324 -3.1475 0.1758 12 6 5.9166 -4.8857 -0.9224 13 1 5.0838 -5.0514 -1.6057 14 6 7.2864 -5.5028 -1.2797 15 7 7.5464 -6.4860 -0.1967 16 6 8.9791 -6.7953 -0.0993 17 6 9.3789 -7.6899 -1.2443 18 8 8.5515 -8.0362 -2.0609 19 7 10.6558 -8.1052 -1.3609 20 6 11.0193 -8.9195 -2.4023 21 1 10.2827 -9.2278 -3.1293 22 6 12.3358 -9.3473 -2.5228 23 7 13.2323 -8.9717 -1.6384 24 14 12.8313 -10.4562 -3.9421 25 1 12.5594 -9.7655 -5.2282 26 1 14.2798 -10.7684 -3.8439 27 1 12.0486 -11.7167 -3.8819 28 6 7.0629 -5.8093 1.0343 29 6 5.7702 -5.0864 0.5987 30 1 4.8367 -5.3928 1.0706 31 7 2.2864 -1.0961 -0.0005 32 1 1.9850 -2.0180 -0.0004 33 1 -0.3634 -0.0007 1.0277 34 1 -0.3634 0.8902 -0.5132 35 1 -0.3634 -0.8898 -0.5144 36 1 5.0188 1.8603 -1.0291 37 1 4.4696 2.5604 0.5125 38 1 5.5693 1.1608 0.5122 39 1 3.8127 -3.2545 0.0104 40 1 8.0595 -4.7344 -1.2892 41 1 7.2390 -6.0051 -2.2459 42 1 9.5544 -5.8704 -0.1429 43 1 9.1779 -7.3026 0.8447 44 1 11.3174 -7.8286 -0.7077 45 1 14.1513 -9.2706 -1.7224 46 1 7.8010 -5.0889 1.3869 47 1 6.8451 -6.5428 1.8106 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114840285.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:21:25 Heat of formation + Delta-G solvation = 26.868613 kcal Electronic energy + Delta-G solvation = -29100.605275 eV Core-core repulsion = 24899.383262 eV Total energy + Delta-G solvation = -4201.222013 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.74716 -40.47825 -39.17333 -37.91773 -35.38014 -34.03685 -33.75700 -33.00965 -32.16621 -31.18597 -29.57679 -28.39238 -27.88000 -26.80876 -24.71760 -23.14491 -21.99429 -21.40108 -21.16563 -20.38371 -20.16858 -19.13355 -18.79372 -17.83612 -17.14098 -16.35432 -16.30265 -15.92968 -15.33533 -15.03883 -14.85735 -14.61333 -14.50326 -14.33470 -13.77655 -13.63641 -13.54510 -13.45740 -13.43874 -12.97382 -12.93142 -12.81874 -12.55532 -12.42088 -12.11203 -11.95414 -11.51913 -11.47387 -11.35074 -11.06511 -10.85875 -10.82061 -10.44396 -10.43577 -10.29185 -10.21518 -10.15204 -9.47631 -9.18816 -8.76186 -8.52284 -8.03645 -7.94025 -6.40238 -3.81105 0.80836 2.29238 2.32156 2.52018 2.84255 3.20897 3.26524 3.30753 3.51440 3.76006 3.90682 3.97775 4.21333 4.25787 4.43635 4.47527 4.50565 4.65759 4.71669 4.86316 4.91236 4.94348 5.14096 5.21301 5.23719 5.25834 5.28425 5.44906 5.51678 5.53678 5.61675 5.66343 5.75575 5.76657 5.81792 5.93212 5.93933 6.13750 6.21154 6.27579 6.33723 6.67565 6.95172 7.01300 7.15698 7.47540 7.56189 7.71288 8.07217 8.63324 9.19469 9.55887 10.07909 10.77462 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.025621 B = 0.001627 C = 0.001602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.575038 B =17207.607019 C =17474.359525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.246 3.754 3 N -0.495 5.495 4 C 0.106 3.894 5 C -0.080 4.080 6 C -0.098 4.098 7 C 0.601 3.399 8 O -0.515 6.515 9 N -0.699 5.699 10 C 0.105 3.895 11 H 0.138 0.862 12 C -0.160 4.160 13 H 0.118 0.882 14 C 0.069 3.931 15 N -0.483 5.483 16 C 0.034 3.966 17 C 0.445 3.555 18 O -0.578 6.578 19 N -0.565 5.565 20 C -0.299 4.299 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.274 1.274 28 C 0.060 3.940 29 C -0.166 4.166 30 H 0.118 0.882 31 N -0.554 5.554 32 H 0.420 0.580 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.395 0.605 40 H 0.044 0.956 41 H 0.104 0.896 42 H 0.053 0.947 43 H 0.090 0.910 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.047 0.953 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.157 16.982 7.947 29.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.018 4.018 3 N -0.216 5.216 4 C -0.028 4.028 5 C -0.137 4.137 6 C -0.213 4.213 7 C 0.389 3.611 8 O -0.390 6.390 9 N -0.348 5.348 10 C -0.002 4.002 11 H 0.155 0.845 12 C -0.180 4.180 13 H 0.136 0.864 14 C -0.059 4.059 15 N -0.207 5.207 16 C -0.098 4.098 17 C 0.230 3.770 18 O -0.461 6.461 19 N -0.202 5.202 20 C -0.429 4.429 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.068 4.068 29 C -0.186 4.186 30 H 0.136 0.864 31 N -0.160 5.160 32 H 0.259 0.741 33 H 0.106 0.894 34 H 0.115 0.885 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.109 0.891 39 H 0.228 0.772 40 H 0.062 0.938 41 H 0.122 0.878 42 H 0.071 0.929 43 H 0.109 0.891 44 H 0.225 0.775 45 H 0.082 0.918 46 H 0.065 0.935 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -23.183 17.369 7.311 29.876 hybrid contribution 0.717 -1.368 -0.098 1.548 sum -22.466 16.001 7.213 28.509 Atomic orbital electron populations 1.20339 0.84030 1.04754 1.04221 1.23460 0.95892 0.81406 1.01061 1.70135 1.01647 1.28215 1.21651 1.21133 0.93214 0.90237 0.98239 1.20337 0.92925 0.97155 1.03328 1.20793 0.83541 0.95433 1.21518 1.16741 0.87146 0.81008 0.76237 1.90849 1.25800 1.72754 1.49591 1.45134 1.08705 1.05465 1.75447 1.21849 0.89787 0.85815 1.02701 0.84461 1.24000 1.00673 1.00190 0.93148 0.86446 1.22675 0.92517 0.92833 0.97890 1.65286 1.15699 1.37874 1.01798 1.22066 0.88353 0.99347 1.00033 1.19672 0.83414 0.85796 0.88084 1.90509 1.50518 1.60621 1.44485 1.41848 1.07760 1.44329 1.26246 1.19643 0.94490 1.24228 1.04518 0.87994 1.25254 0.95526 0.98518 0.98627 1.69607 1.03444 1.45675 1.35628 0.85919 0.77234 0.80168 0.80897 1.19946 1.20988 1.19927 1.22666 0.93590 0.96408 0.94129 1.23807 1.00546 0.96753 0.97517 0.86408 1.43174 1.05987 1.10149 1.56693 0.74095 0.89420 0.88491 0.90255 0.90471 0.90894 0.89116 0.77152 0.93752 0.87824 0.92945 0.89137 0.77503 0.91845 0.93480 0.89299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.22 10.51 36.00 0.38 0.16 16 2 C 0.25 1.76 8.12 -155.61 -1.26 0.49 16 3 N -0.50 -5.18 11.20 -6.85 -0.08 -5.26 16 4 C 0.11 1.16 7.15 -82.52 -0.59 0.57 16 5 C -0.08 -0.78 9.88 36.00 0.36 -0.42 16 6 C -0.10 -0.95 7.08 -82.14 -0.58 -1.53 16 7 C 0.60 6.56 7.79 -12.82 -0.10 6.46 16 8 O -0.52 -7.28 14.38 5.20 0.07 -7.20 16 9 N -0.70 -6.02 5.56 -55.09 -0.31 -6.33 16 10 C 0.10 1.10 5.98 -67.92 -0.41 0.70 16 11 H 0.14 1.69 7.40 -51.93 -0.38 1.31 16 12 C -0.16 -1.88 7.05 -89.28 -0.63 -2.51 16 13 H 0.12 1.27 8.14 -51.93 -0.42 0.84 16 14 C 0.07 1.06 5.73 -2.15 -0.01 1.05 16 15 N -0.48 -7.88 4.98 -231.38 -1.15 -9.03 16 16 C 0.03 0.60 5.32 -4.98 -0.03 0.57 16 17 C 0.45 10.51 7.63 -10.98 -0.08 10.43 16 18 O -0.58 -15.60 14.80 5.54 0.08 -15.52 16 19 N -0.56 -14.35 5.29 -10.96 -0.06 -14.40 16 20 C -0.30 -8.36 9.68 -14.93 -0.14 -8.51 16 21 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.60 13.05 55.50 0.72 -23.88 16 24 Si 0.93 21.13 29.55 -169.99 -5.02 16.11 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 28 C 0.06 0.74 6.26 -2.18 -0.01 0.72 16 29 C -0.17 -1.71 7.04 -89.31 -0.63 -2.34 16 30 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 31 N -0.55 -3.45 6.07 -7.02 -0.04 -3.49 16 32 H 0.42 1.09 8.32 -40.82 -0.34 0.75 16 33 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 34 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.08 0.06 8.14 -51.92 -0.42 -0.36 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.09 0.96 6.47 -51.93 -0.34 0.62 16 39 H 0.39 2.17 8.07 -40.82 -0.33 1.84 16 40 H 0.04 0.68 7.75 -51.93 -0.40 0.28 16 41 H 0.10 1.90 7.23 -51.93 -0.38 1.53 16 42 H 0.05 0.85 7.77 -51.93 -0.40 0.45 16 43 H 0.09 1.44 8.08 -51.93 -0.42 1.02 16 44 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 45 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 46 H 0.05 0.54 7.99 -51.93 -0.42 0.13 16 47 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 394.49 15.07 5.94 5.94 Total: -1.00 -35.76 394.49 -10.29 -46.06 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -6.62 Total: 10.65 kcal Atomic # 6 Polarization: 10.19 SS G_CDS: -3.84 Total: 6.35 kcal Atomic # 7 Polarization: -61.48 SS G_CDS: -0.91 Total: -62.39 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: 0.16 Total: -22.72 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.76 -10.29 -46.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114840285.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.925 kcal (2) G-P(sol) polarization free energy of solvation -35.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds