Wall clock time and date at job start Sat Apr 11 2020 08:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30859 * 125.42197 * 2 1 4 4 C 1.33316 * 109.69021 * 180.02562 * 3 2 1 5 5 C 1.50697 * 126.10732 * 179.97438 * 4 3 2 6 6 C 1.36668 * 107.78656 * 359.97438 * 4 3 2 7 7 C 1.46762 * 126.84598 * 180.26373 * 6 4 3 8 8 O 1.21683 * 120.00069 * 359.71038 * 7 6 4 9 9 N 1.34771 * 119.99730 * 179.70832 * 7 6 4 10 10 C 1.46504 * 119.99637 * 180.02562 * 9 7 6 11 11 H 1.08992 * 115.51953 * 9.41452 * 10 9 7 12 12 C 1.53007 * 117.44128 * 223.99502 * 10 9 7 13 13 H 1.08994 * 119.52492 * 4.09217 * 12 10 9 14 14 C 1.54428 * 118.09502 * 160.62088 * 12 10 9 15 15 N 1.48562 * 104.53806 * 87.32968 * 14 12 10 16 16 C 1.46892 * 111.00052 * 200.94331 * 15 14 12 17 17 C 1.50702 * 109.47498 * 285.42129 * 16 15 14 18 18 O 1.21298 * 119.99709 * 359.97438 * 17 16 15 19 19 N 1.34776 * 119.99945 * 179.97438 * 17 16 15 20 20 C 1.37102 * 119.99423 * 179.97438 * 19 17 16 21 21 H 1.07991 * 120.00546 * 0.02562 * 20 19 17 22 22 C 1.38950 * 119.99731 * 179.97438 * 20 19 17 23 23 N 1.31416 * 119.99876 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00142 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.46978 * 60.00138 * 24 22 20 26 26 H 1.48497 * 109.47020 * 180.02562 * 24 22 20 27 27 H 1.48493 * 109.46867 * 300.00211 * 24 22 20 28 28 C 1.48560 * 104.22194 * 320.50431 * 15 14 12 29 29 C 1.53000 * 117.44225 * 154.84032 * 10 9 7 30 30 H 1.08998 * 119.52949 * 354.34780 * 29 10 9 31 31 N 1.34497 * 125.41786 * 180.02562 * 2 1 3 32 32 H 0.96997 * 126.47650 * 359.96613 * 31 2 1 33 33 H 1.09002 * 109.47379 * 269.95980 * 1 2 3 34 34 H 1.08994 * 109.47480 * 29.96426 * 1 2 3 35 35 H 1.09010 * 109.47067 * 149.96520 * 1 2 3 36 36 H 1.08999 * 109.47361 * 269.99721 * 5 4 3 37 37 H 1.08997 * 109.47229 * 30.00181 * 5 4 3 38 38 H 1.09000 * 109.46675 * 149.99847 * 5 4 3 39 39 H 0.96995 * 120.00741 * 0.02562 * 9 7 6 40 40 H 1.08999 * 110.45162 * 328.56288 * 14 12 10 41 41 H 1.09001 * 110.52587 * 206.13906 * 14 12 10 42 42 H 1.09004 * 109.47476 * 45.42194 * 16 15 14 43 43 H 1.09002 * 109.47008 * 165.42020 * 16 15 14 44 44 H 0.96994 * 120.00528 * 0.02562 * 19 17 16 45 45 H 0.97004 * 120.00031 * 179.97438 * 23 22 20 46 46 H 1.08992 * 110.40742 * 280.70311 * 28 15 14 47 47 H 1.09000 * 110.40889 * 158.25877 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7049 -0.0006 5 6 4.7335 1.6360 -0.0013 6 6 3.5976 -0.6609 -0.0004 7 6 4.8029 -1.4983 0.0046 8 8 5.9038 -0.9800 0.0038 9 7 4.6902 -2.8413 0.0101 10 6 5.8934 -3.6772 0.0156 11 1 6.8324 -3.1475 0.1758 12 6 5.9166 -4.8857 -0.9224 13 1 5.0838 -5.0514 -1.6057 14 6 7.2864 -5.5028 -1.2797 15 7 7.5464 -6.4860 -0.1967 16 6 8.9791 -6.7953 -0.0993 17 6 9.3789 -7.6899 -1.2443 18 8 8.5515 -8.0362 -2.0609 19 7 10.6558 -8.1052 -1.3609 20 6 11.0193 -8.9195 -2.4023 21 1 10.2827 -9.2278 -3.1293 22 6 12.3358 -9.3473 -2.5228 23 7 13.2323 -8.9717 -1.6384 24 14 12.8313 -10.4562 -3.9421 25 1 12.5594 -9.7655 -5.2282 26 1 14.2798 -10.7684 -3.8439 27 1 12.0486 -11.7167 -3.8819 28 6 7.0629 -5.8093 1.0343 29 6 5.7702 -5.0864 0.5987 30 1 4.8367 -5.3928 1.0706 31 7 2.2864 -1.0961 -0.0005 32 1 1.9850 -2.0180 -0.0004 33 1 -0.3634 -0.0007 1.0277 34 1 -0.3634 0.8902 -0.5132 35 1 -0.3634 -0.8898 -0.5144 36 1 5.0188 1.8603 -1.0291 37 1 4.4696 2.5604 0.5125 38 1 5.5693 1.1608 0.5122 39 1 3.8127 -3.2545 0.0104 40 1 8.0595 -4.7344 -1.2892 41 1 7.2390 -6.0051 -2.2459 42 1 9.5544 -5.8704 -0.1429 43 1 9.1779 -7.3026 0.8447 44 1 11.3174 -7.8286 -0.7077 45 1 14.1513 -9.2706 -1.7224 46 1 7.8010 -5.0889 1.3869 47 1 6.8451 -6.5428 1.8106 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114840285.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:21:24 Heat of formation + Delta-G solvation = -1.470456 kcal Electronic energy + Delta-G solvation = -29101.834149 eV Core-core repulsion = 24899.383262 eV Total energy + Delta-G solvation = -4202.450887 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.37771 -41.47702 -40.29987 -39.57369 -36.49742 -35.83794 -34.64172 -33.84555 -33.25752 -32.83801 -30.10423 -29.46222 -29.22433 -27.67119 -26.48573 -24.20415 -22.83283 -22.26054 -21.97364 -21.39429 -20.95484 -20.86031 -19.86654 -19.47788 -18.07209 -17.63155 -17.07424 -16.95915 -16.62433 -16.46401 -16.21527 -15.80960 -15.62741 -15.42213 -14.98597 -14.88820 -14.81485 -14.19068 -14.07164 -13.99965 -13.89294 -13.56063 -13.40522 -13.31593 -13.25193 -13.18662 -13.03374 -12.94254 -12.54320 -12.48389 -12.43039 -12.12749 -11.95894 -11.62368 -11.48441 -11.18179 -11.08614 -11.02167 -10.32991 -10.04059 -10.00297 -9.43862 -9.39336 -8.46278 -5.95128 0.10871 1.39487 1.41058 1.52075 1.59952 1.66142 1.88640 2.05141 2.05947 2.28333 2.62177 2.80266 3.20206 3.26103 3.34707 3.53015 3.62030 3.66570 3.77656 3.91133 4.05489 4.08266 4.22177 4.26881 4.39396 4.47113 4.49409 4.51922 4.58417 4.66701 4.71570 4.74054 4.78631 4.88353 4.95795 5.01578 5.05473 5.08917 5.15272 5.30626 5.40506 5.50306 5.78736 5.85271 6.06254 6.18361 6.32372 6.60804 6.84766 6.93841 7.13004 7.56575 8.12576 8.70897 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.025621 B = 0.001627 C = 0.001602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.575038 B =17207.607019 C =17474.359525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.256 3.744 3 N -0.531 5.531 4 C 0.083 3.917 5 C -0.077 4.077 6 C -0.108 4.108 7 C 0.602 3.398 8 O -0.554 6.554 9 N -0.681 5.681 10 C 0.114 3.886 11 H 0.119 0.881 12 C -0.167 4.167 13 H 0.129 0.871 14 C 0.067 3.933 15 N -0.504 5.504 16 C 0.046 3.954 17 C 0.442 3.558 18 O -0.616 6.616 19 N -0.575 5.575 20 C -0.334 4.334 21 H 0.079 0.921 22 C -0.013 4.013 23 N -0.920 5.920 24 Si 0.993 3.007 25 H -0.273 1.273 26 H -0.270 1.270 27 H -0.271 1.271 28 C 0.057 3.943 29 C -0.143 4.143 30 H 0.150 0.850 31 N -0.538 5.538 32 H 0.439 0.561 33 H 0.104 0.896 34 H 0.096 0.904 35 H 0.107 0.893 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.413 0.587 40 H 0.039 0.961 41 H 0.065 0.935 42 H 0.069 0.931 43 H 0.114 0.886 44 H 0.396 0.604 45 H 0.277 0.723 46 H 0.056 0.944 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.303 16.701 9.077 31.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.008 4.008 3 N -0.253 5.253 4 C -0.052 4.052 5 C -0.134 4.134 6 C -0.224 4.224 7 C 0.390 3.610 8 O -0.432 6.432 9 N -0.331 5.331 10 C 0.007 3.993 11 H 0.137 0.863 12 C -0.188 4.188 13 H 0.147 0.853 14 C -0.061 4.061 15 N -0.228 5.228 16 C -0.086 4.086 17 C 0.229 3.771 18 O -0.502 6.502 19 N -0.213 5.213 20 C -0.464 4.464 21 H 0.097 0.903 22 C -0.213 4.213 23 N -0.561 5.561 24 Si 0.817 3.183 25 H -0.198 1.198 26 H -0.195 1.195 27 H -0.197 1.197 28 C -0.070 4.070 29 C -0.163 4.163 30 H 0.167 0.833 31 N -0.145 5.145 32 H 0.281 0.719 33 H 0.122 0.878 34 H 0.115 0.885 35 H 0.126 0.874 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.250 0.750 40 H 0.057 0.943 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.132 0.868 44 H 0.229 0.771 45 H 0.087 0.913 46 H 0.074 0.926 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -25.369 17.057 8.470 31.721 hybrid contribution 1.298 -1.244 -0.439 1.850 sum -24.071 15.813 8.031 29.899 Atomic orbital electron populations 1.20572 0.80814 1.06153 1.05660 1.24264 0.97394 0.80779 0.98382 1.70129 1.01697 1.30053 1.23443 1.21361 0.93774 0.91064 0.98967 1.20274 0.92600 0.97390 1.03175 1.20520 0.84414 0.94932 1.22527 1.16902 0.86978 0.81527 0.75597 1.90832 1.27336 1.73559 1.51484 1.44901 1.09097 1.04594 1.74496 1.21582 0.89950 0.85777 1.01996 0.86280 1.23834 0.98858 1.01462 0.94597 0.85272 1.22523 0.94864 0.92391 0.96351 1.65231 1.14500 1.39258 1.03834 1.21918 0.89855 0.98783 0.98004 1.20736 0.82324 0.85211 0.88819 1.90479 1.51416 1.61955 1.46334 1.41924 1.08653 1.44627 1.26051 1.19623 0.94876 1.26261 1.05602 0.90339 1.26036 0.94956 0.99351 1.00924 1.69671 1.03774 1.46057 1.36637 0.84989 0.77429 0.78195 0.77718 1.19818 1.19461 1.19666 1.22787 0.94568 0.97056 0.92615 1.23884 1.00909 0.95687 0.95782 0.83287 1.43057 1.04507 1.11139 1.55810 0.71874 0.87796 0.88490 0.87447 0.90572 0.90163 0.90354 0.74963 0.94302 0.91631 0.91343 0.86770 0.77053 0.91324 0.92570 0.87589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.18 10.51 71.23 0.75 0.56 16 2 C 0.26 3.10 8.12 138.20 1.12 4.22 16 3 N -0.53 -10.67 11.20 -175.57 -1.97 -12.63 16 4 C 0.08 1.80 7.15 41.96 0.30 2.10 16 5 C -0.08 -1.56 9.88 71.23 0.70 -0.86 16 6 C -0.11 -1.99 7.08 40.01 0.28 -1.71 16 7 C 0.60 12.66 7.79 86.47 0.67 13.34 16 8 O -0.55 -15.93 14.38 -4.29 -0.06 -15.99 16 9 N -0.68 -10.33 5.56 -446.42 -2.48 -12.81 16 10 C 0.11 2.21 5.98 44.99 0.27 2.48 16 11 H 0.12 2.87 7.40 -2.39 -0.02 2.85 16 12 C -0.17 -3.72 7.05 -9.93 -0.07 -3.79 16 13 H 0.13 2.57 8.14 -2.39 -0.02 2.55 16 14 C 0.07 2.10 5.73 86.47 0.50 2.60 16 15 N -0.50 -16.05 4.98 -885.95 -4.41 -20.46 16 16 C 0.05 1.60 5.32 85.56 0.45 2.06 16 17 C 0.44 21.36 7.63 87.66 0.67 22.03 16 18 O -0.62 -34.50 14.80 -3.09 -0.05 -34.55 16 19 N -0.57 -29.93 5.29 -306.98 -1.62 -31.56 16 20 C -0.33 -19.21 9.68 84.04 0.81 -18.39 16 21 H 0.08 4.79 7.16 -2.92 -0.02 4.77 16 22 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 23 N -0.92 -50.14 13.05 21.66 0.28 -49.86 16 24 Si 0.99 43.36 29.55 68.60 2.03 45.39 16 25 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 26 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 27 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 28 C 0.06 1.25 6.26 86.45 0.54 1.79 16 29 C -0.14 -2.52 7.04 -9.94 -0.07 -2.59 16 30 H 0.15 1.77 8.14 -2.39 -0.02 1.76 16 31 N -0.54 -5.39 6.07 -176.11 -1.07 -6.46 16 32 H 0.44 0.75 8.32 -92.71 -0.77 -0.02 16 33 H 0.10 0.00 8.14 -2.39 -0.02 -0.02 16 34 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 35 H 0.11 -0.30 8.14 -2.38 -0.02 -0.32 16 36 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.08 1.76 6.47 -2.39 -0.02 1.75 16 39 H 0.41 3.18 8.07 -92.71 -0.75 2.43 16 40 H 0.04 1.23 7.75 -2.39 -0.02 1.21 16 41 H 0.07 2.54 7.23 -2.39 -0.02 2.53 16 42 H 0.07 2.18 7.77 -2.38 -0.02 2.16 16 43 H 0.11 3.44 8.08 -2.39 -0.02 3.42 16 44 H 0.40 19.56 7.90 -92.71 -0.73 18.83 16 45 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 46 H 0.06 1.16 7.99 -2.39 -0.02 1.14 16 47 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -81.04 394.49 -3.15 -84.18 By element: Atomic # 1 Polarization: 32.35 SS G_CDS: -1.20 Total: 31.15 kcal Atomic # 6 Polarization: 16.20 SS G_CDS: 7.40 Total: 23.60 kcal Atomic # 7 Polarization: -122.51 SS G_CDS: -11.27 Total: -133.78 kcal Atomic # 8 Polarization: -50.43 SS G_CDS: -0.11 Total: -50.54 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -81.04 -3.15 -84.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114840285.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.713 kcal (2) G-P(sol) polarization free energy of solvation -81.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds