Wall clock time and date at job start Sat Apr 11 2020 08:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.35314 * 126.12430 * 2 1 4 4 C 1.39869 * 107.91791 * 180.02562 * 3 2 1 5 5 N 1.30833 * 108.20290 * 359.74092 * 4 3 2 6 6 N 1.34941 * 126.12545 * 180.02562 * 2 1 3 7 7 C 1.46497 * 126.04222 * 359.95681 * 6 2 1 8 8 C 1.50706 * 109.47099 * 89.99771 * 7 6 2 9 9 O 1.21282 * 119.99675 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99981 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00006 * 180.02562 * 10 8 7 12 12 H 1.08997 * 115.49263 * 9.61744 * 11 10 8 13 13 C 1.57168 * 116.91632 * 223.11513 * 11 10 8 14 14 H 1.08992 * 120.63500 * 3.42226 * 13 11 10 15 15 C 1.54378 * 118.11802 * 161.40905 * 13 11 10 16 16 N 1.48560 * 104.69549 * 86.11811 * 15 13 11 17 17 C 1.46905 * 110.99577 * 200.89794 * 16 15 13 18 18 C 1.50698 * 109.47165 * 169.99909 * 17 16 15 19 19 O 1.21299 * 119.99948 * 0.02562 * 18 17 16 20 20 N 1.34780 * 120.00283 * 180.02562 * 18 17 16 21 21 C 1.37097 * 120.00035 * 180.02562 * 20 18 17 22 22 H 1.08004 * 120.00014 * 0.02562 * 21 20 18 23 23 C 1.38946 * 120.00002 * 179.97438 * 21 20 18 24 24 N 1.31416 * 119.99983 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00133 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47124 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.47209 * 120.00296 * 25 23 21 28 28 H 1.48505 * 109.47136 * 240.00365 * 25 23 21 29 29 C 1.48555 * 104.22165 * 320.45136 * 16 15 13 30 30 C 1.53001 * 117.44490 * 154.99839 * 11 10 8 31 31 H 1.09000 * 119.52419 * 354.35474 * 30 11 10 32 32 H 1.08995 * 109.46764 * 269.97367 * 1 2 3 33 33 H 1.09002 * 109.47195 * 29.97358 * 1 2 3 34 34 H 1.08995 * 109.46863 * 149.97469 * 1 2 3 35 35 H 1.08004 * 126.04093 * 0.02562 * 3 2 1 36 36 H 1.08008 * 125.89755 * 179.97438 * 4 3 2 37 37 H 1.09000 * 109.47051 * 330.00305 * 7 6 2 38 38 H 1.08997 * 109.47588 * 209.99995 * 7 6 2 39 39 H 0.97000 * 120.00006 * 0.02562 * 10 8 7 40 40 H 1.09002 * 110.41432 * 327.27728 * 15 13 11 41 41 H 1.09002 * 110.41130 * 204.95513 * 15 13 11 42 42 H 1.09000 * 109.47225 * 289.99666 * 17 16 15 43 43 H 1.08997 * 109.47331 * 50.00020 * 17 16 15 44 44 H 0.96997 * 119.99533 * 359.97438 * 20 18 17 45 45 H 0.96992 * 119.99972 * 179.97438 * 24 23 21 46 46 H 1.09005 * 110.41154 * 158.26271 * 29 16 15 47 47 H 1.08995 * 110.41948 * 280.70356 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 3.6335 0.6560 -0.0006 5 7 3.6334 -0.6523 0.0047 6 7 2.3026 -1.0900 -0.0005 7 6 1.8540 -2.4845 -0.0002 8 6 1.6993 -2.9627 -1.4210 9 8 1.9405 -2.2126 -2.3429 10 7 1.2928 -4.2240 -1.6670 11 6 1.1429 -4.6890 -3.0481 12 1 1.5319 -4.0179 -3.8139 13 6 -0.1373 -5.5390 -3.3777 14 1 -0.8973 -5.7163 -2.6168 15 6 -0.5602 -5.6742 -4.8562 16 7 0.2244 -6.8269 -5.3687 17 6 0.3227 -6.7869 -6.8339 18 6 1.3188 -7.8177 -7.2989 19 8 1.8904 -8.5172 -6.4893 20 7 1.5748 -7.9623 -8.6142 21 6 2.4807 -8.9004 -9.0372 22 1 2.9889 -9.5238 -8.3164 23 6 2.7441 -9.0499 -10.3933 24 7 2.1253 -8.2918 -11.2703 25 14 3.9789 -10.3276 -10.9696 26 1 4.5345 -11.0447 -9.7938 27 1 3.3042 -11.2980 -11.8685 28 1 5.0804 -9.6553 -11.7045 29 6 1.5612 -6.6665 -4.7410 30 6 1.2612 -6.1931 -3.3025 31 1 1.5413 -6.8559 -2.4839 32 1 -0.3633 -0.0005 1.0276 33 1 -0.3634 0.8902 -0.5134 34 1 -0.3633 -0.8897 -0.5142 35 1 1.9740 2.1211 0.0004 36 1 4.5084 1.2892 -0.0011 37 1 0.8958 -2.5579 0.5142 38 1 2.5902 -3.1030 0.5131 39 1 1.0996 -4.8238 -0.9296 40 1 -0.3092 -4.7681 -5.4078 41 1 -1.6283 -5.8789 -4.9290 42 1 -0.6530 -7.0023 -7.2696 43 1 0.6507 -5.7965 -7.1492 44 1 1.1174 -7.4032 -9.2616 45 1 2.3094 -8.3959 -12.2169 46 1 2.0904 -7.6193 -4.7249 47 1 2.1442 -5.9159 -5.2744 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114894495.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:21:36 Heat of formation + Delta-G solvation = 32.818494 kcal Electronic energy + Delta-G solvation = -29218.889454 eV Core-core repulsion = 25017.925447 eV Total energy + Delta-G solvation = -4200.964007 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.28927 -41.38864 -40.47419 -39.54099 -36.42432 -35.79850 -34.59056 -33.69493 -33.26601 -32.88196 -29.48922 -29.30629 -28.31443 -27.80504 -26.51590 -24.01565 -22.43277 -22.08516 -21.87830 -21.37026 -20.94447 -20.58531 -19.87174 -18.55357 -18.18481 -17.70190 -17.36943 -16.68111 -16.55872 -16.39429 -16.33123 -15.96606 -15.59543 -15.16307 -15.07984 -14.97338 -14.73282 -14.62270 -14.16875 -13.90418 -13.80995 -13.56329 -13.55078 -13.35189 -13.22061 -13.13924 -12.96499 -12.89716 -12.55108 -12.43492 -12.41814 -12.12486 -11.96557 -11.58189 -11.51735 -11.44107 -11.13233 -10.26259 -10.22514 -10.04941 -9.82635 -9.46869 -9.42948 -8.49817 -5.98665 0.78544 1.28216 1.34188 1.39640 1.40357 1.53974 1.92544 1.94387 1.99572 2.25976 2.54013 2.82996 3.16827 3.23950 3.45007 3.58919 3.64899 3.65467 3.74936 3.77959 4.07603 4.09211 4.15926 4.23267 4.25235 4.33690 4.39625 4.47959 4.52508 4.59266 4.72519 4.75027 4.79187 4.84248 4.93642 5.03975 5.11208 5.20019 5.25490 5.34441 5.38594 5.71157 5.76055 5.84139 6.03760 6.04263 6.36447 6.56444 6.73845 7.03482 7.09253 7.51295 8.06618 8.67884 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019195 B = 0.001714 C = 0.001656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.350236 B =16335.895908 C =16906.038312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.087 3.913 3 C -0.292 4.292 4 C 0.040 3.960 5 N -0.338 5.338 6 N -0.369 5.369 7 C 0.115 3.885 8 C 0.499 3.501 9 O -0.573 6.573 10 N -0.675 5.675 11 C 0.107 3.893 12 H 0.104 0.896 13 C -0.145 4.145 14 H 0.155 0.845 15 C 0.054 3.946 16 N -0.499 5.499 17 C 0.044 3.956 18 C 0.438 3.562 19 O -0.613 6.613 20 N -0.572 5.572 21 C -0.332 4.332 22 H 0.080 0.920 23 C -0.014 4.014 24 N -0.920 5.920 25 Si 0.994 3.006 26 H -0.273 1.273 27 H -0.269 1.269 28 H -0.272 1.272 29 C 0.063 3.937 30 C -0.161 4.161 31 H 0.136 0.864 32 H 0.107 0.893 33 H 0.094 0.906 34 H 0.070 0.930 35 H 0.166 0.834 36 H 0.203 0.797 37 H 0.170 0.830 38 H 0.146 0.854 39 H 0.425 0.575 40 H 0.045 0.955 41 H 0.111 0.889 42 H 0.116 0.884 43 H 0.064 0.936 44 H 0.396 0.604 45 H 0.278 0.722 46 H 0.084 0.916 47 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.050 16.333 26.090 32.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.040 4.040 3 C -0.321 4.321 4 C -0.145 4.145 5 N -0.158 5.158 6 N -0.152 5.152 7 C -0.010 4.010 8 C 0.285 3.715 9 O -0.451 6.451 10 N -0.326 5.326 11 C -0.001 4.001 12 H 0.122 0.878 13 C -0.165 4.165 14 H 0.173 0.827 15 C -0.074 4.074 16 N -0.224 5.224 17 C -0.087 4.087 18 C 0.226 3.774 19 O -0.500 6.500 20 N -0.209 5.209 21 C -0.462 4.462 22 H 0.098 0.902 23 C -0.214 4.214 24 N -0.561 5.561 25 Si 0.818 3.182 26 H -0.197 1.197 27 H -0.194 1.194 28 H -0.197 1.197 29 C -0.065 4.065 30 C -0.182 4.182 31 H 0.154 0.846 32 H 0.125 0.875 33 H 0.113 0.887 34 H 0.089 0.911 35 H 0.184 0.816 36 H 0.220 0.780 37 H 0.188 0.812 38 H 0.164 0.836 39 H 0.264 0.736 40 H 0.063 0.937 41 H 0.129 0.871 42 H 0.134 0.866 43 H 0.082 0.918 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.102 0.898 47 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -8.054 14.702 25.901 30.853 hybrid contribution 0.657 0.753 -1.359 1.687 sum -7.397 15.456 24.542 29.932 Atomic orbital electron populations 1.20597 0.84762 1.04649 1.04890 1.21753 0.96345 0.86951 0.98979 1.21604 0.92112 1.00155 1.18227 1.24333 0.99648 0.91973 0.98577 1.77303 0.97854 1.14471 1.26206 1.48157 1.03755 1.05554 1.57753 1.21750 1.06391 0.79649 0.93181 1.21472 0.75850 0.81759 0.92415 1.90787 1.50659 1.56048 1.47634 1.44978 1.67462 1.12875 1.07309 1.22175 1.00571 0.92071 0.85266 0.87818 1.24729 0.90899 1.03049 0.97790 0.82714 1.22833 1.00142 0.91300 0.93077 1.65422 1.11817 1.41068 1.04090 1.21995 0.99840 0.96747 0.90124 1.20679 0.86502 0.87703 0.82523 1.90439 1.55756 1.50226 1.53572 1.41929 1.38512 1.34393 1.06092 1.19708 1.19348 1.14868 0.92253 0.90168 1.26072 0.99998 1.00139 0.95189 1.69681 1.43338 1.40263 1.02854 0.84852 0.77632 0.77655 0.78080 1.19725 1.19438 1.19735 1.22650 0.91109 1.00524 0.92203 1.23937 1.01818 0.94381 0.98020 0.84638 0.87469 0.88721 0.91061 0.81619 0.78042 0.81247 0.83621 0.73577 0.93680 0.87129 0.86636 0.91827 0.77041 0.91273 0.89762 0.96332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.74 9.90 71.24 0.71 -0.03 16 2 C 0.09 1.45 6.93 41.41 0.29 1.73 16 3 C -0.29 -5.12 10.72 21.99 0.24 -4.88 16 4 C 0.04 0.82 12.03 85.24 1.02 1.84 16 5 N -0.34 -8.37 12.58 -57.02 -0.72 -9.09 16 6 N -0.37 -7.15 3.10 -338.40 -1.05 -8.20 16 7 C 0.12 1.28 6.55 85.64 0.56 1.84 16 8 C 0.50 9.32 7.90 87.66 0.69 10.01 16 9 O -0.57 -17.77 16.00 -3.03 -0.05 -17.82 16 10 N -0.67 -9.39 5.57 -435.61 -2.43 -11.82 16 11 C 0.11 2.24 6.19 46.46 0.29 2.53 16 12 H 0.10 2.95 7.40 -2.39 -0.02 2.93 16 13 C -0.14 -2.68 7.25 -8.32 -0.06 -2.74 16 14 H 0.16 1.88 8.14 -2.39 -0.02 1.86 16 15 C 0.05 1.25 6.31 86.45 0.55 1.79 16 16 N -0.50 -16.29 5.34 -886.06 -4.73 -21.02 16 17 C 0.04 1.59 5.55 85.56 0.47 2.06 16 18 C 0.44 21.21 7.50 87.66 0.66 21.87 16 19 O -0.61 -33.72 13.24 -3.09 -0.04 -33.76 16 20 N -0.57 -29.90 5.29 -306.98 -1.62 -31.53 16 21 C -0.33 -19.10 9.68 84.04 0.81 -18.28 16 22 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 23 C -0.01 -0.77 5.50 84.92 0.47 -0.31 16 24 N -0.92 -50.35 13.05 21.66 0.28 -50.06 16 25 Si 0.99 43.49 29.55 68.60 2.03 45.52 16 26 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 27 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 28 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 29 C 0.06 2.16 5.11 86.45 0.44 2.60 16 30 C -0.16 -3.76 6.91 -9.79 -0.07 -3.83 16 31 H 0.14 2.65 8.14 -2.39 -0.02 2.63 16 32 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.07 0.56 7.72 -2.39 -0.02 0.54 16 35 H 0.17 2.03 8.06 -2.91 -0.02 2.00 16 36 H 0.20 2.80 8.06 -2.91 -0.02 2.77 16 37 H 0.17 0.21 7.66 -2.39 -0.02 0.19 16 38 H 0.15 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.43 2.26 8.83 -92.71 -0.82 1.44 16 40 H 0.04 1.07 7.82 -2.39 -0.02 1.05 16 41 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.12 3.61 8.14 -2.39 -0.02 3.59 16 43 H 0.06 2.11 7.88 -2.39 -0.02 2.09 16 44 H 0.40 19.72 7.90 -92.71 -0.73 18.99 16 45 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 46 H 0.08 3.54 6.05 -2.38 -0.01 3.53 16 47 H 0.02 0.69 7.99 -2.39 -0.02 0.67 16 Total: -1.00 -85.70 396.86 -1.79 -87.48 By element: Atomic # 1 Polarization: 34.62 SS G_CDS: -0.53 Total: 34.09 kcal Atomic # 6 Polarization: 9.14 SS G_CDS: 7.06 Total: 16.20 kcal Atomic # 7 Polarization: -121.45 SS G_CDS: -10.26 Total: -131.71 kcal Atomic # 8 Polarization: -51.49 SS G_CDS: -0.09 Total: -51.58 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -85.70 -1.79 -87.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114894495.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.300 kcal (2) G-P(sol) polarization free energy of solvation -85.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds