Wall clock time and date at job start Sat Apr 11 2020 08:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30457 * 125.99046 * 2 1 4 4 N 1.39927 * 108.89798 * 180.22713 * 3 2 1 5 5 H 0.96996 * 125.75590 * 179.76982 * 4 3 2 6 6 C 1.34261 * 108.49158 * 359.75002 * 4 3 2 7 7 C 1.50703 * 126.28851 * 180.02562 * 6 4 3 8 8 C 1.38043 * 107.41705 * 0.02562 * 6 4 3 9 9 C 1.47432 * 126.41238 * 179.97438 * 8 6 4 10 10 O 1.21603 * 120.00137 * 89.99871 * 9 8 6 11 11 N 1.34777 * 119.99549 * 270.27063 * 9 8 6 12 12 C 1.46505 * 119.99724 * 179.72679 * 11 9 8 13 13 H 1.09001 * 115.51828 * 9.41517 * 12 11 9 14 14 C 1.52999 * 117.44257 * 223.99882 * 12 11 9 15 15 H 1.09002 * 119.52924 * 4.08940 * 14 12 11 16 16 C 1.54382 * 118.12684 * 160.68615 * 14 12 11 17 17 N 1.48554 * 104.59556 * 87.23045 * 16 14 12 18 18 C 1.46897 * 111.00156 * 200.96158 * 17 16 14 19 19 C 1.50699 * 109.47455 * 190.00170 * 18 17 16 20 20 O 1.21300 * 119.99655 * 359.97438 * 19 18 17 21 21 N 1.34775 * 120.00540 * 179.97438 * 19 18 17 22 22 C 1.37091 * 120.00155 * 179.97438 * 21 19 18 23 23 H 1.07998 * 120.00296 * 359.97438 * 22 21 19 24 24 C 1.38955 * 119.99840 * 179.97438 * 22 21 19 25 25 N 1.31412 * 120.00120 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 119.99989 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.46955 * 90.00373 * 26 24 22 28 28 H 1.48501 * 109.47043 * 210.00234 * 26 24 22 29 29 H 1.48500 * 109.47380 * 330.00074 * 26 24 22 30 30 C 1.48426 * 104.21915 * 320.56337 * 17 16 14 31 31 C 1.52995 * 117.44234 * 154.84134 * 12 11 9 32 32 H 1.08998 * 119.52951 * 355.90720 * 31 12 11 33 33 H 1.09006 * 109.47231 * 270.18596 * 1 2 3 34 34 H 1.08997 * 109.47034 * 30.18485 * 1 2 3 35 35 H 1.08993 * 109.47288 * 150.18548 * 1 2 3 36 36 H 1.09000 * 109.47276 * 269.95434 * 7 6 4 37 37 H 1.08999 * 109.47460 * 29.96058 * 7 6 4 38 38 H 1.09008 * 109.46781 * 149.96092 * 7 6 4 39 39 H 0.97000 * 120.00483 * 359.73112 * 11 9 8 40 40 H 1.09006 * 110.40939 * 206.00764 * 16 14 12 41 41 H 1.08994 * 110.41339 * 328.44888 * 16 14 12 42 42 H 1.09004 * 109.47026 * 309.99580 * 18 17 16 43 43 H 1.08996 * 109.47737 * 69.99332 * 18 17 16 44 44 H 0.96999 * 119.99345 * 359.97438 * 21 19 18 45 45 H 0.97000 * 120.00130 * 179.97438 * 25 24 22 46 46 H 1.08996 * 110.42085 * 280.64754 * 30 17 16 47 47 H 1.09000 * 110.37602 * 158.21896 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0555 0.0000 4 7 3.6111 0.6443 -0.0052 5 1 4.3841 1.2301 -0.0095 6 6 3.6439 -0.6979 -0.0029 7 6 4.8800 -1.5599 -0.0063 8 6 2.3372 -1.1432 0.0032 9 6 1.8915 -2.5485 0.0070 10 8 1.7122 -3.1266 1.0617 11 7 1.6882 -3.1941 -1.1585 12 6 1.2511 -4.5924 -1.1547 13 1 0.9593 -4.9905 -0.1829 14 6 1.9391 -5.5488 -2.1308 15 1 2.7661 -5.1888 -2.7428 16 6 1.8441 -7.0645 -1.8533 17 7 0.5806 -7.4870 -2.5105 18 6 0.0890 -8.7498 -1.9435 19 6 -1.0446 -9.2721 -2.7881 20 8 -1.4076 -8.6529 -3.7659 21 7 -1.6551 -10.4271 -2.4570 22 6 -2.6867 -10.9019 -3.2250 23 1 -3.0104 -10.3502 -4.0951 24 6 -3.3157 -12.0930 -2.8839 25 7 -2.9221 -12.7642 -1.8248 26 14 -4.7218 -12.7396 -3.9300 27 1 -4.1809 -13.6196 -4.9969 28 1 -5.6580 -13.5145 -3.0765 29 1 -5.4442 -11.5989 -4.5480 30 6 -0.3634 -6.3755 -2.2341 31 6 0.4874 -5.0957 -2.3812 32 1 0.2336 -4.3983 -3.1795 33 1 -0.3634 0.0033 1.0277 34 1 -0.3633 0.8883 -0.5167 35 1 -0.3633 -0.8916 -0.5109 36 1 5.1734 -1.7703 -1.0348 37 1 5.6894 -1.0366 0.5026 38 1 4.6712 -2.4966 0.5107 39 1 1.8313 -2.7330 -1.9998 40 1 2.6943 -7.5856 -2.2937 41 1 1.7960 -7.2524 -0.7808 42 1 0.8976 -9.4807 -1.9288 43 1 -0.2644 -8.5785 -0.9268 44 1 -1.3645 -10.9225 -1.6753 45 1 -3.3615 -13.5955 -1.5865 46 1 -0.7584 -6.4550 -1.2213 47 1 -1.1756 -6.3777 -2.9610 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114978106.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:21:46 Heat of formation + Delta-G solvation = 41.193638 kcal Electronic energy + Delta-G solvation = -29327.346057 eV Core-core repulsion = 25126.745224 eV Total energy + Delta-G solvation = -4200.600833 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.90234 -40.33730 -38.98932 -37.86227 -35.11753 -34.01179 -33.84103 -32.81418 -31.82977 -31.15676 -28.70704 -28.30948 -27.88968 -27.38259 -24.76865 -23.50273 -21.92723 -21.02431 -20.62758 -20.28531 -19.92678 -19.08386 -18.19010 -17.80927 -17.06838 -16.79757 -15.91103 -15.62843 -15.13453 -15.00580 -14.83092 -14.49958 -14.32858 -14.20250 -13.82190 -13.71277 -13.60416 -13.50546 -13.35108 -12.94918 -12.89321 -12.84094 -12.52637 -12.41861 -12.08172 -11.90753 -11.46996 -11.40370 -11.28831 -11.24164 -11.02469 -10.76871 -10.37149 -10.27011 -10.19214 -10.06398 -9.83637 -9.46283 -9.08519 -8.94719 -8.47909 -7.99118 -7.91424 -6.38330 -3.78950 1.21608 1.98365 2.20242 2.24560 2.87055 3.20255 3.28622 3.34408 3.58725 3.94079 3.98215 4.03488 4.17487 4.27341 4.42811 4.59261 4.60796 4.72459 4.80819 4.82013 4.87557 5.03813 5.21962 5.24651 5.25506 5.27197 5.28280 5.28592 5.47241 5.48859 5.56277 5.63956 5.74091 5.80982 5.86649 6.01469 6.02862 6.04229 6.28586 6.30940 6.39455 6.66857 7.07765 7.12260 7.20896 7.21989 7.58360 7.95295 8.09728 8.65718 9.21793 9.58411 10.10539 10.79528 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.025921 B = 0.001710 C = 0.001664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.929493 B =16369.710700 C =16822.876966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.120 3.880 3 N -0.294 5.294 4 N -0.462 5.462 5 H 0.442 0.558 6 C 0.135 3.865 7 C -0.102 4.102 8 C -0.286 4.286 9 C 0.604 3.396 10 O -0.529 6.529 11 N -0.691 5.691 12 C 0.105 3.895 13 H 0.135 0.865 14 C -0.169 4.169 15 H 0.118 0.882 16 C 0.061 3.939 17 N -0.483 5.483 18 C 0.034 3.966 19 C 0.446 3.554 20 O -0.577 6.577 21 N -0.566 5.566 22 C -0.297 4.297 23 H 0.103 0.897 24 C 0.021 3.979 25 N -0.903 5.903 26 Si 0.930 3.070 27 H -0.278 1.278 28 H -0.284 1.284 29 H -0.270 1.270 30 C 0.069 3.931 31 C -0.161 4.161 32 H 0.119 0.881 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.403 0.597 40 H 0.087 0.913 41 H 0.046 0.954 42 H 0.090 0.910 43 H 0.052 0.948 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.043 0.957 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.259 24.164 4.835 29.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.048 4.048 3 N -0.117 5.117 4 N -0.168 5.168 5 H 0.287 0.713 6 C 0.003 3.997 7 C -0.160 4.160 8 C -0.301 4.301 9 C 0.389 3.611 10 O -0.404 6.404 11 N -0.340 5.340 12 C -0.002 4.002 13 H 0.152 0.848 14 C -0.190 4.190 15 H 0.135 0.865 16 C -0.067 4.067 17 N -0.207 5.207 18 C -0.098 4.098 19 C 0.231 3.769 20 O -0.461 6.461 21 N -0.203 5.203 22 C -0.427 4.427 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.544 5.544 26 Si 0.757 3.243 27 H -0.204 1.204 28 H -0.210 1.210 29 H -0.195 1.195 30 C -0.059 4.059 31 C -0.181 4.181 32 H 0.137 0.863 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.108 0.892 37 H 0.098 0.902 38 H 0.110 0.890 39 H 0.238 0.762 40 H 0.106 0.894 41 H 0.064 0.936 42 H 0.108 0.892 43 H 0.070 0.930 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.061 0.939 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 15.870 25.145 4.459 30.067 hybrid contribution -0.013 -0.930 0.404 1.014 sum 15.857 24.216 4.863 29.351 Atomic orbital electron populations 1.20302 0.85858 1.03865 1.03886 1.22375 0.97069 0.88720 0.96606 1.77128 0.86104 1.22098 1.26356 1.45996 1.07699 1.04717 1.58433 0.71320 1.21403 0.96117 0.85068 0.97158 1.20619 0.92150 0.99046 1.04205 1.19797 0.92234 0.94009 1.24071 1.17239 0.76111 0.84350 0.83352 1.90810 1.50505 1.67859 1.31178 1.45331 1.68355 1.11532 1.08749 1.21839 1.00689 0.80989 0.96667 0.84768 1.23887 0.96985 0.94136 1.03946 0.86451 1.22646 0.94611 0.92102 0.97383 1.65238 1.01926 1.01317 1.52236 1.22060 0.98544 0.92733 0.96439 1.19690 0.85824 0.83549 0.87840 1.90510 1.67041 1.59158 1.29348 1.41856 1.31257 1.20077 1.27108 1.19689 1.09139 1.04988 1.08890 0.87939 1.25255 0.99320 0.96457 0.96986 1.69613 1.42548 1.16676 1.25566 0.85862 0.80373 0.78875 0.79194 1.20443 1.20981 1.19456 1.22635 0.95572 0.86991 1.00672 1.23930 0.94385 0.99990 0.99784 0.86296 0.89709 0.90134 0.90111 0.89205 0.90193 0.88954 0.76225 0.89445 0.93552 0.89173 0.92981 0.77516 0.91925 0.93876 0.87862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 10.28 36.00 0.37 -0.24 16 2 C 0.12 1.15 7.26 -82.02 -0.60 0.56 16 3 N -0.29 -2.82 12.63 33.89 0.43 -2.40 16 4 N -0.46 -3.11 7.29 33.86 0.25 -2.86 16 5 H 0.44 1.43 8.96 -182.73 -1.64 -0.21 16 6 C 0.14 0.98 7.29 -81.60 -0.60 0.38 16 7 C -0.10 -0.43 10.25 36.01 0.37 -0.06 16 8 C -0.29 -2.74 5.88 -105.07 -0.62 -3.36 16 9 C 0.60 6.68 6.98 -12.52 -0.09 6.59 16 10 O -0.53 -7.95 16.67 5.27 0.09 -7.86 16 11 N -0.69 -6.26 5.56 -54.88 -0.31 -6.56 16 12 C 0.10 1.12 5.98 -67.93 -0.41 0.72 16 13 H 0.13 1.70 7.40 -51.93 -0.38 1.31 16 14 C -0.17 -1.82 7.05 -89.31 -0.63 -2.45 16 15 H 0.12 1.08 8.14 -51.93 -0.42 0.65 16 16 C 0.06 0.76 6.26 -2.18 -0.01 0.75 16 17 N -0.48 -7.97 4.97 -231.53 -1.15 -9.12 16 18 C 0.03 0.61 5.32 -4.98 -0.03 0.58 16 19 C 0.45 10.54 7.63 -10.99 -0.08 10.46 16 20 O -0.58 -15.59 14.80 5.54 0.08 -15.51 16 21 N -0.57 -14.39 5.29 -10.96 -0.06 -14.45 16 22 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 23 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 24 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 25 N -0.90 -24.67 13.05 55.50 0.72 -23.94 16 26 Si 0.93 21.15 29.55 -169.99 -5.02 16.13 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 28 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 29 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 30 C 0.07 1.07 5.72 -2.25 -0.01 1.06 16 31 C -0.16 -1.89 7.04 -89.31 -0.63 -2.52 16 32 H 0.12 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.59 8.00 -51.93 -0.42 0.17 16 36 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 38 H 0.09 0.52 7.96 -51.92 -0.41 0.11 16 39 H 0.40 2.76 8.81 -40.82 -0.36 2.40 16 40 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.05 0.56 8.00 -51.93 -0.42 0.14 16 42 H 0.09 1.45 8.08 -51.93 -0.42 1.03 16 43 H 0.05 0.85 7.77 -51.93 -0.40 0.45 16 44 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 45 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 46 H 0.04 0.65 7.75 -51.93 -0.40 0.25 16 47 H 0.10 1.88 7.23 -51.93 -0.38 1.50 16 LS Contribution 399.58 15.07 6.02 6.02 Total: -1.00 -35.83 399.58 -10.17 -45.99 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: -8.02 Total: 10.09 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: -3.20 Total: 4.47 kcal Atomic # 7 Polarization: -59.22 SS G_CDS: -0.12 Total: -59.33 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: 0.17 Total: -23.37 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.83 -10.17 -45.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114978106.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.185 kcal (2) G-P(sol) polarization free energy of solvation -35.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds