Wall clock time and date at job start Sat Apr 11 2020 08:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30457 * 125.99046 * 2 1 4 4 N 1.39927 * 108.89798 * 180.22713 * 3 2 1 5 5 H 0.96996 * 125.75590 * 179.76982 * 4 3 2 6 6 C 1.34261 * 108.49158 * 359.75002 * 4 3 2 7 7 C 1.50703 * 126.28851 * 180.02562 * 6 4 3 8 8 C 1.38043 * 107.41705 * 0.02562 * 6 4 3 9 9 C 1.47432 * 126.41238 * 179.97438 * 8 6 4 10 10 O 1.21603 * 120.00137 * 89.99871 * 9 8 6 11 11 N 1.34777 * 119.99549 * 270.27063 * 9 8 6 12 12 C 1.46505 * 119.99724 * 179.72679 * 11 9 8 13 13 H 1.09001 * 115.51828 * 9.41517 * 12 11 9 14 14 C 1.52999 * 117.44257 * 223.99882 * 12 11 9 15 15 H 1.09002 * 119.52924 * 4.08940 * 14 12 11 16 16 C 1.54382 * 118.12684 * 160.68615 * 14 12 11 17 17 N 1.48554 * 104.59556 * 87.23045 * 16 14 12 18 18 C 1.46897 * 111.00156 * 200.96158 * 17 16 14 19 19 C 1.50699 * 109.47455 * 190.00170 * 18 17 16 20 20 O 1.21300 * 119.99655 * 359.97438 * 19 18 17 21 21 N 1.34775 * 120.00540 * 179.97438 * 19 18 17 22 22 C 1.37091 * 120.00155 * 179.97438 * 21 19 18 23 23 H 1.07998 * 120.00296 * 359.97438 * 22 21 19 24 24 C 1.38955 * 119.99840 * 179.97438 * 22 21 19 25 25 N 1.31412 * 120.00120 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 119.99989 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.46955 * 90.00373 * 26 24 22 28 28 H 1.48501 * 109.47043 * 210.00234 * 26 24 22 29 29 H 1.48500 * 109.47380 * 330.00074 * 26 24 22 30 30 C 1.48426 * 104.21915 * 320.56337 * 17 16 14 31 31 C 1.52995 * 117.44234 * 154.84134 * 12 11 9 32 32 H 1.08998 * 119.52951 * 355.90720 * 31 12 11 33 33 H 1.09006 * 109.47231 * 270.18596 * 1 2 3 34 34 H 1.08997 * 109.47034 * 30.18485 * 1 2 3 35 35 H 1.08993 * 109.47288 * 150.18548 * 1 2 3 36 36 H 1.09000 * 109.47276 * 269.95434 * 7 6 4 37 37 H 1.08999 * 109.47460 * 29.96058 * 7 6 4 38 38 H 1.09008 * 109.46781 * 149.96092 * 7 6 4 39 39 H 0.97000 * 120.00483 * 359.73112 * 11 9 8 40 40 H 1.09006 * 110.40939 * 206.00764 * 16 14 12 41 41 H 1.08994 * 110.41339 * 328.44888 * 16 14 12 42 42 H 1.09004 * 109.47026 * 309.99580 * 18 17 16 43 43 H 1.08996 * 109.47737 * 69.99332 * 18 17 16 44 44 H 0.96999 * 119.99345 * 359.97438 * 21 19 18 45 45 H 0.97000 * 120.00130 * 179.97438 * 25 24 22 46 46 H 1.08996 * 110.42085 * 280.64754 * 30 17 16 47 47 H 1.09000 * 110.37602 * 158.21896 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0555 0.0000 4 7 3.6111 0.6443 -0.0052 5 1 4.3841 1.2301 -0.0095 6 6 3.6439 -0.6979 -0.0029 7 6 4.8800 -1.5599 -0.0063 8 6 2.3372 -1.1432 0.0032 9 6 1.8915 -2.5485 0.0070 10 8 1.7122 -3.1266 1.0617 11 7 1.6882 -3.1941 -1.1585 12 6 1.2511 -4.5924 -1.1547 13 1 0.9593 -4.9905 -0.1829 14 6 1.9391 -5.5488 -2.1308 15 1 2.7661 -5.1888 -2.7428 16 6 1.8441 -7.0645 -1.8533 17 7 0.5806 -7.4870 -2.5105 18 6 0.0890 -8.7498 -1.9435 19 6 -1.0446 -9.2721 -2.7881 20 8 -1.4076 -8.6529 -3.7659 21 7 -1.6551 -10.4271 -2.4570 22 6 -2.6867 -10.9019 -3.2250 23 1 -3.0104 -10.3502 -4.0951 24 6 -3.3157 -12.0930 -2.8839 25 7 -2.9221 -12.7642 -1.8248 26 14 -4.7218 -12.7396 -3.9300 27 1 -4.1809 -13.6196 -4.9969 28 1 -5.6580 -13.5145 -3.0765 29 1 -5.4442 -11.5989 -4.5480 30 6 -0.3634 -6.3755 -2.2341 31 6 0.4874 -5.0957 -2.3812 32 1 0.2336 -4.3983 -3.1795 33 1 -0.3634 0.0033 1.0277 34 1 -0.3633 0.8883 -0.5167 35 1 -0.3633 -0.8916 -0.5109 36 1 5.1734 -1.7703 -1.0348 37 1 5.6894 -1.0366 0.5026 38 1 4.6712 -2.4966 0.5107 39 1 1.8313 -2.7330 -1.9998 40 1 2.6943 -7.5856 -2.2937 41 1 1.7960 -7.2524 -0.7808 42 1 0.8976 -9.4807 -1.9288 43 1 -0.2644 -8.5785 -0.9268 44 1 -1.3645 -10.9225 -1.6753 45 1 -3.3615 -13.5955 -1.5865 46 1 -0.7584 -6.4550 -1.2213 47 1 -1.1756 -6.3777 -2.9610 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114978106.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:21:42 Heat of formation + Delta-G solvation = 12.549390 kcal Electronic energy + Delta-G solvation = -29328.588165 eV Core-core repulsion = 25126.745224 eV Total energy + Delta-G solvation = -4201.842941 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 2.63 seconds Orbital eigenvalues (eV) -42.53097 -41.37148 -40.17086 -39.48147 -36.34253 -35.74921 -34.57719 -33.81896 -33.21283 -32.46185 -29.45042 -29.37343 -28.93140 -28.23166 -26.54773 -24.51741 -22.99385 -21.99004 -21.34388 -21.22977 -20.86391 -20.69256 -19.84092 -18.83115 -18.02189 -17.65775 -17.48623 -16.64633 -16.45211 -16.15599 -16.10473 -15.78262 -15.57228 -15.26763 -14.86282 -14.85035 -14.72766 -14.25673 -14.10556 -14.08107 -13.83203 -13.53478 -13.39981 -13.34315 -13.32811 -13.10202 -13.00073 -12.93283 -12.47918 -12.42558 -12.39000 -12.11237 -11.94218 -11.85884 -11.46842 -11.17900 -11.01744 -10.43203 -10.30209 -9.98975 -9.82698 -9.72714 -9.34635 -8.44677 -5.93184 0.64682 1.29550 1.39124 1.39259 1.42451 1.55273 1.68586 2.06937 2.08341 2.30124 2.66318 2.85250 3.22074 3.38901 3.47109 3.58275 3.62577 3.71701 3.86766 3.96915 4.05459 4.11773 4.28119 4.31163 4.32541 4.42757 4.52871 4.56403 4.62635 4.65154 4.67111 4.69128 4.81537 4.87007 4.94512 4.98351 5.04023 5.13805 5.15722 5.39826 5.42600 5.44564 5.84098 5.89203 6.09238 6.23585 6.45746 6.52608 6.62899 7.15107 7.15253 7.58829 8.14902 8.72816 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.025921 B = 0.001710 C = 0.001664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.929493 B =16369.710700 C =16822.876966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.109 3.891 3 N -0.319 5.319 4 N -0.450 5.450 5 H 0.457 0.543 6 C 0.151 3.849 7 C -0.101 4.101 8 C -0.316 4.316 9 C 0.612 3.388 10 O -0.574 6.574 11 N -0.674 5.674 12 C 0.115 3.885 13 H 0.116 0.884 14 C -0.151 4.151 15 H 0.144 0.856 16 C 0.059 3.941 17 N -0.505 5.505 18 C 0.046 3.954 19 C 0.443 3.557 20 O -0.615 6.615 21 N -0.576 5.576 22 C -0.331 4.331 23 H 0.079 0.921 24 C -0.014 4.014 25 N -0.921 5.921 26 Si 0.993 3.007 27 H -0.271 1.271 28 H -0.271 1.271 29 H -0.273 1.273 30 C 0.067 3.933 31 C -0.163 4.163 32 H 0.133 0.867 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.111 0.889 37 H 0.105 0.895 38 H 0.079 0.921 39 H 0.417 0.583 40 H 0.103 0.897 41 H 0.055 0.945 42 H 0.113 0.887 43 H 0.069 0.931 44 H 0.396 0.604 45 H 0.277 0.723 46 H 0.040 0.960 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.276 24.946 4.670 31.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.058 4.058 3 N -0.142 5.142 4 N -0.158 5.158 5 H 0.305 0.695 6 C 0.017 3.983 7 C -0.159 4.159 8 C -0.331 4.331 9 C 0.399 3.601 10 O -0.453 6.453 11 N -0.323 5.323 12 C 0.008 3.992 13 H 0.134 0.866 14 C -0.171 4.171 15 H 0.162 0.838 16 C -0.068 4.068 17 N -0.229 5.229 18 C -0.085 4.085 19 C 0.230 3.770 20 O -0.501 6.501 21 N -0.214 5.214 22 C -0.461 4.461 23 H 0.097 0.903 24 C -0.214 4.214 25 N -0.562 5.562 26 Si 0.817 3.183 27 H -0.196 1.196 28 H -0.196 1.196 29 H -0.198 1.198 30 C -0.061 4.061 31 C -0.183 4.183 32 H 0.150 0.850 33 H 0.102 0.898 34 H 0.110 0.890 35 H 0.099 0.901 36 H 0.129 0.871 37 H 0.123 0.877 38 H 0.097 0.903 39 H 0.254 0.746 40 H 0.121 0.879 41 H 0.073 0.927 42 H 0.131 0.869 43 H 0.087 0.913 44 H 0.229 0.771 45 H 0.086 0.914 46 H 0.058 0.942 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 17.925 25.960 4.281 31.836 hybrid contribution -0.579 -1.123 0.461 1.345 sum 17.346 24.837 4.742 30.664 Atomic orbital electron populations 1.20344 0.85225 1.04412 1.03969 1.22632 0.97818 0.88799 0.96572 1.77069 0.87302 1.22514 1.27354 1.46011 1.07465 1.04935 1.57382 0.69480 1.21809 0.96359 0.85333 0.94818 1.20758 0.91372 0.98043 1.05708 1.19780 0.93474 0.93079 1.26770 1.17406 0.75103 0.84717 0.82890 1.90787 1.52663 1.68990 1.32816 1.45169 1.67312 1.10771 1.09059 1.21567 1.00329 0.81846 0.95457 0.86575 1.23951 0.96790 0.92979 1.03401 0.83840 1.22745 0.92939 0.93398 0.97762 1.65186 1.03496 1.00893 1.53369 1.21912 0.96869 0.94040 0.95710 1.20737 0.86256 0.82385 0.87624 1.90481 1.68368 1.59966 1.31263 1.41931 1.31320 1.20908 1.27192 1.19652 1.11071 1.06022 1.09351 0.90327 1.26039 1.01262 0.96057 0.98040 1.69676 1.43335 1.16941 1.26286 0.84927 0.77443 0.78110 0.77846 1.19621 1.19603 1.19807 1.22496 0.95381 0.88949 0.99244 1.23767 0.94522 0.99085 1.00959 0.84958 0.89843 0.88994 0.90131 0.87074 0.87685 0.90251 0.74565 0.87874 0.92726 0.86886 0.91324 0.77066 0.91363 0.94202 0.91483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.21 10.28 71.23 0.73 -0.48 16 2 C 0.11 2.02 7.26 43.51 0.32 2.34 16 3 N -0.32 -5.78 12.63 -46.68 -0.59 -6.37 16 4 N -0.45 -5.17 7.29 -46.79 -0.34 -5.51 16 5 H 0.46 1.86 8.96 -213.44 -1.91 -0.05 16 6 C 0.15 1.87 7.29 42.14 0.31 2.17 16 7 C -0.10 -0.55 10.25 71.24 0.73 0.18 16 8 C -0.32 -5.73 5.88 -20.15 -0.12 -5.84 16 9 C 0.61 13.05 6.98 86.66 0.60 13.65 16 10 O -0.57 -17.31 16.67 -4.04 -0.07 -17.38 16 11 N -0.67 -11.14 5.56 -445.79 -2.48 -13.61 16 12 C 0.12 2.31 5.98 44.99 0.27 2.58 16 13 H 0.12 2.88 7.40 -2.39 -0.02 2.86 16 14 C -0.15 -2.86 7.05 -9.94 -0.07 -2.93 16 15 H 0.14 2.04 8.14 -2.39 -0.02 2.02 16 16 C 0.06 1.34 6.26 86.45 0.54 1.88 16 17 N -0.51 -16.29 4.97 -886.43 -4.41 -20.70 16 18 C 0.05 1.62 5.32 85.56 0.46 2.08 16 19 C 0.44 21.41 7.63 87.66 0.67 22.08 16 20 O -0.62 -34.44 14.80 -3.09 -0.05 -34.49 16 21 N -0.58 -29.99 5.29 -306.98 -1.62 -31.61 16 22 C -0.33 -19.04 9.68 84.04 0.81 -18.23 16 23 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 24 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 25 N -0.92 -50.26 13.05 21.66 0.28 -49.97 16 26 Si 0.99 43.42 29.55 68.60 2.03 45.44 16 27 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 28 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 29 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 30 C 0.07 2.11 5.72 86.48 0.49 2.60 16 31 C -0.16 -3.66 7.04 -9.94 -0.07 -3.73 16 32 H 0.13 2.61 8.14 -2.39 -0.02 2.59 16 33 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 34 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.08 1.17 8.00 -2.39 -0.02 1.15 16 36 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 37 H 0.10 0.07 8.14 -2.39 -0.02 0.05 16 38 H 0.08 0.72 7.96 -2.38 -0.02 0.70 16 39 H 0.42 4.74 8.81 -92.71 -0.82 3.93 16 40 H 0.10 2.07 8.14 -2.38 -0.02 2.05 16 41 H 0.05 1.18 8.00 -2.39 -0.02 1.16 16 42 H 0.11 3.45 8.08 -2.39 -0.02 3.43 16 43 H 0.07 2.19 7.77 -2.39 -0.02 2.18 16 44 H 0.40 19.57 7.90 -92.71 -0.73 18.84 16 45 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 46 H 0.04 1.24 7.75 -2.39 -0.02 1.22 16 47 H 0.07 2.57 7.23 -2.39 -0.02 2.56 16 Total: -1.00 -79.86 399.58 -3.52 -83.38 By element: Atomic # 1 Polarization: 35.19 SS G_CDS: -2.42 Total: 32.78 kcal Atomic # 6 Polarization: 11.90 SS G_CDS: 6.14 Total: 18.05 kcal Atomic # 7 Polarization: -118.62 SS G_CDS: -9.16 Total: -127.78 kcal Atomic # 8 Polarization: -51.76 SS G_CDS: -0.11 Total: -51.87 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.44 kcal Total: -79.86 -3.52 -83.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114978106.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.932 kcal (2) G-P(sol) polarization free energy of solvation -79.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.63 seconds