Wall clock time and date at job start Sat Apr 11 2020 08:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50702 * 110.43460 * 2 1 4 4 O 1.21285 * 120.00310 * 239.30140 * 3 2 1 5 5 N 1.34773 * 119.99871 * 59.30315 * 3 2 1 6 6 C 1.46501 * 120.00384 * 179.97438 * 5 3 2 7 7 C 1.50695 * 109.47707 * 180.02562 * 6 5 3 8 8 C 1.40072 * 126.12387 * 260.00150 * 7 6 5 9 9 N 1.31010 * 108.25577 * 180.02562 * 8 7 6 10 10 N 1.39741 * 108.17752 * 0.15564 * 9 8 7 11 11 C 1.34641 * 126.12742 * 79.99636 * 7 6 5 12 12 C 1.50631 * 127.92376 * 359.68264 * 11 7 6 13 13 N 1.47500 * 107.20649 * 169.70689 * 12 11 7 14 14 C 1.36940 * 121.00920 * 222.87219 * 13 12 11 15 15 H 1.08004 * 119.99931 * 341.14893 * 14 13 12 16 16 C 1.38813 * 119.99769 * 161.14475 * 14 13 12 17 17 N 1.31614 * 120.00057 * 325.46311 * 16 14 13 18 18 Si 1.86798 * 119.99951 * 145.46880 * 16 14 13 19 19 H 1.48502 * 109.47129 * 179.97438 * 18 16 14 20 20 H 1.48505 * 109.47122 * 299.99825 * 18 16 14 21 21 H 1.48507 * 109.47244 * 59.99583 * 18 16 14 22 22 C 1.47080 * 117.97934 * 42.60592 * 13 12 11 23 23 C 1.46560 * 127.32662 * 179.52516 * 10 9 8 24 24 C 1.54630 * 110.48605 * 237.46153 * 2 1 3 25 25 C 1.54824 * 101.60390 * 216.42893 * 24 2 1 26 26 N 1.46766 * 105.49597 * 25.43222 * 25 24 2 27 27 C 1.34417 * 111.29892 * 342.96099 * 26 25 24 28 28 O 1.21282 * 124.94318 * 180.43861 * 27 26 25 29 29 H 1.09002 * 109.46956 * 60.69292 * 1 2 3 30 30 H 1.08995 * 109.47184 * 180.69901 * 1 2 3 31 31 H 1.09005 * 109.46933 * 300.70185 * 1 2 3 32 32 H 0.97005 * 120.00561 * 359.97438 * 5 3 2 33 33 H 1.08999 * 109.47118 * 59.99344 * 6 5 3 34 34 H 1.09002 * 109.46742 * 299.99920 * 6 5 3 35 35 H 1.08001 * 125.87308 * 0.03475 * 8 7 6 36 36 H 1.09003 * 109.92059 * 50.22665 * 12 11 7 37 37 H 1.09002 * 109.77169 * 289.09949 * 12 11 7 38 38 H 0.97005 * 120.00249 * 354.09802 * 17 16 14 39 39 H 1.08999 * 109.51298 * 56.63594 * 22 13 12 40 40 H 1.09000 * 109.51669 * 176.73757 * 22 13 12 41 41 H 1.09003 * 109.50754 * 41.46820 * 23 10 9 42 42 H 1.09004 * 109.50372 * 281.34271 * 23 10 9 43 43 H 1.08998 * 110.96974 * 334.50924 * 24 2 1 44 44 H 1.09008 * 110.97012 * 98.27345 * 24 2 1 45 45 H 1.09003 * 110.25789 * 266.41335 * 25 24 2 46 46 H 1.09002 * 110.29040 * 144.46941 * 25 24 2 47 47 H 0.96999 * 124.34923 * 162.98609 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0562 1.4122 0.0000 4 8 2.7704 1.7933 -0.9031 5 7 1.7331 2.2517 1.0036 6 6 2.2450 3.6243 1.0040 7 6 1.7411 4.3481 2.2260 8 6 0.6633 5.2416 2.2707 9 7 0.5316 5.6644 3.5037 10 7 1.5217 5.0574 4.2808 11 6 2.2463 4.2518 3.4703 12 6 3.4068 3.4119 3.9359 13 7 3.7276 3.8354 5.3119 14 6 5.0258 4.0040 5.7136 15 1 5.8284 3.5502 5.1512 16 6 5.3102 4.7583 6.8437 17 7 4.5724 5.8080 7.1371 18 14 6.7402 4.2837 7.9479 19 1 6.8320 5.2422 9.0784 20 1 6.5236 2.9130 8.4767 21 1 8.0023 4.3189 7.1660 22 6 2.6105 4.0768 6.2377 23 6 1.7630 5.2408 5.7147 24 6 2.0712 -0.7791 -1.2211 25 6 3.3233 -1.4655 -0.6226 26 7 3.0583 -1.5786 0.8165 27 6 2.0595 -0.7623 1.1946 28 8 1.6438 -0.6524 2.3286 29 1 -0.3633 0.5030 -0.8962 30 1 -0.3633 -1.0275 0.0125 31 1 -0.3633 0.5247 0.8837 32 1 1.1616 1.9471 1.7259 33 1 1.9010 4.1406 0.1078 34 1 3.3348 3.6056 1.0169 35 1 0.0467 5.5319 1.4329 36 1 4.2671 3.5747 3.2866 37 1 3.1267 2.3585 3.9268 38 1 3.8850 6.1054 6.5206 39 1 1.9936 3.1807 6.3055 40 1 3.0022 4.3246 7.2242 41 1 0.8103 5.2655 6.2439 42 1 2.2947 6.1784 5.8773 43 1 1.3471 -1.5179 -1.5646 44 1 2.3449 -0.0989 -2.0278 45 1 4.2084 -0.8536 -0.7963 46 1 3.4575 -2.4548 -1.0603 47 1 3.5420 -2.1665 1.4175 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128488676.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:22:24 Heat of formation + Delta-G solvation = 37.474873 kcal Electronic energy + Delta-G solvation = -31646.763445 eV Core-core repulsion = 27446.001354 eV Total energy + Delta-G solvation = -4200.762091 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 2.62 seconds Orbital eigenvalues (eV) -41.42742 -41.04481 -38.88589 -36.69555 -36.55426 -34.96202 -33.53916 -32.60974 -32.01843 -29.92641 -29.29307 -28.75340 -26.24960 -25.66583 -24.91676 -23.41144 -22.49809 -21.85434 -21.66965 -20.37661 -19.57380 -18.63261 -17.76683 -17.51707 -17.20018 -16.17031 -15.90835 -15.65922 -15.25005 -15.18730 -14.78441 -14.33662 -14.27991 -14.10321 -13.87940 -13.78517 -13.74287 -13.57714 -13.26501 -13.06952 -12.78403 -12.66620 -12.56095 -12.50513 -11.86781 -11.70085 -11.63356 -11.52176 -11.44479 -10.96591 -10.75008 -10.58725 -10.33659 -10.18399 -10.11023 -9.86469 -9.74602 -9.39173 -9.02055 -8.78921 -8.54157 -8.08052 -7.27899 -6.35700 -3.38829 2.10892 2.30542 2.53501 2.80569 2.95876 3.08602 3.41950 3.46572 3.50991 3.64216 3.90439 4.06991 4.39134 4.41323 4.67901 4.70804 4.87716 4.96089 4.98120 5.11232 5.17680 5.18700 5.28940 5.35126 5.37269 5.54112 5.55150 5.59418 5.69017 5.76338 5.78439 5.84301 5.87998 6.10119 6.16287 6.32360 6.43529 6.45840 6.49472 6.58649 6.68365 6.69036 6.98825 7.46298 7.50022 7.68533 7.94093 8.11377 8.15341 8.29712 8.77854 9.56522 9.94702 10.93323 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012000 B = 0.003362 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.703108 B = 8327.167826 C = 9724.502337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.121 4.121 3 C 0.533 3.467 4 O -0.536 6.536 5 N -0.710 5.710 6 C 0.210 3.790 7 C -0.288 4.288 8 C 0.054 3.946 9 N -0.309 5.309 10 N -0.347 5.347 11 C 0.118 3.882 12 C 0.198 3.802 13 N -0.598 5.598 14 C -0.361 4.361 15 H 0.069 0.931 16 C -0.018 4.018 17 N -0.902 5.902 18 Si 1.057 2.943 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.291 1.291 22 C 0.127 3.873 23 C 0.108 3.892 24 C -0.116 4.116 25 C 0.099 3.901 26 N -0.728 5.728 27 C 0.530 3.470 28 O -0.513 6.513 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.406 0.594 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.177 0.823 36 H 0.082 0.918 37 H 0.054 0.946 38 H 0.268 0.732 39 H 0.034 0.966 40 H 0.113 0.887 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.110 0.890 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.450 -13.277 -15.786 21.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.128 4.128 3 C 0.316 3.684 4 O -0.414 6.414 5 N -0.361 5.361 6 C 0.086 3.914 7 C -0.301 4.301 8 C -0.132 4.132 9 N -0.129 5.129 10 N -0.127 5.127 11 C -0.014 4.014 12 C 0.071 3.929 13 N -0.321 5.321 14 C -0.488 4.488 15 H 0.087 0.913 16 C -0.220 4.220 17 N -0.543 5.543 18 Si 0.886 3.114 19 H -0.210 1.210 20 H -0.218 1.218 21 H -0.218 1.218 22 C -0.001 4.001 23 C -0.015 4.015 24 C -0.154 4.154 25 C -0.026 4.026 26 N -0.384 5.384 27 C 0.314 3.686 28 O -0.388 6.388 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.242 0.758 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.194 0.806 36 H 0.100 0.900 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.052 0.948 40 H 0.131 0.869 41 H 0.099 0.901 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.128 0.872 45 H 0.096 0.904 46 H 0.101 0.899 47 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -7.036 -11.661 -13.474 19.158 hybrid contribution -0.396 -1.088 -1.483 1.881 sum -7.432 -12.748 -14.957 21.011 Atomic orbital electron populations 1.21676 0.89663 1.03564 1.03692 1.21646 0.99566 0.94427 0.97124 1.19640 0.80597 0.85794 0.82339 1.90688 1.37363 1.77059 1.36259 1.46299 1.51653 1.12914 1.25249 1.19358 0.98176 0.79355 0.94479 1.19392 1.05102 1.11102 0.94487 1.23670 0.97418 0.97003 0.95124 1.77227 1.11293 1.21229 1.03162 1.48656 1.22623 1.32586 1.08851 1.21867 0.95434 0.93744 0.90401 1.20034 0.91391 0.94306 0.87206 1.44396 1.02947 1.79768 1.04976 1.19980 0.82846 1.31709 1.14276 0.91332 1.25783 1.03825 0.92877 0.99541 1.70914 1.23355 1.18594 1.41392 0.83644 0.75109 0.75942 0.76698 1.20994 1.21826 1.21788 1.21429 0.88423 0.93201 0.97052 1.22772 1.00771 1.03560 0.74412 1.22759 0.96602 0.99260 0.96807 1.22199 0.98891 1.01637 0.79837 1.46142 1.37057 1.44106 1.11074 1.20314 0.79791 0.79676 0.88808 1.90811 1.61006 1.65857 1.21103 0.90765 0.91085 0.90926 0.75818 0.90764 0.91096 0.80579 0.90032 0.92825 0.91933 0.94841 0.86905 0.90112 0.89226 0.89242 0.87185 0.90358 0.89869 0.74680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.06 8.31 37.16 0.31 -0.76 16 2 C -0.12 -1.22 0.74 -155.67 -0.12 -1.34 16 3 C 0.53 6.88 6.55 -10.99 -0.07 6.80 16 4 O -0.54 -8.06 15.46 5.55 0.09 -7.98 16 5 N -0.71 -9.52 5.41 -61.47 -0.33 -9.86 16 6 C 0.21 3.02 5.95 -5.20 -0.03 2.99 16 7 C -0.29 -4.83 5.46 -105.21 -0.57 -5.40 16 8 C 0.05 0.89 11.97 -17.21 -0.21 0.68 16 9 N -0.31 -6.00 12.61 30.70 0.39 -5.61 16 10 N -0.35 -7.16 4.03 -57.10 -0.23 -7.39 16 11 C 0.12 2.34 6.70 -82.37 -0.55 1.79 16 12 C 0.20 4.16 6.63 -4.68 -0.03 4.13 16 13 N -0.60 -14.45 2.95 -173.24 -0.51 -14.96 16 14 C -0.36 -9.62 9.53 -15.06 -0.14 -9.76 16 15 H 0.07 1.84 8.02 -52.48 -0.42 1.42 16 16 C -0.02 -0.48 4.54 -17.43 -0.08 -0.56 16 17 N -0.90 -25.26 12.17 55.49 0.68 -24.58 16 18 Si 1.06 24.02 30.03 -169.99 -5.11 18.92 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 21 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 22 C 0.13 2.82 5.48 -3.63 -0.02 2.80 16 23 C 0.11 2.23 7.22 -3.91 -0.03 2.20 16 24 C -0.12 -0.85 6.06 -24.91 -0.15 -1.00 16 25 C 0.10 0.68 7.79 -2.94 -0.02 0.66 16 26 N -0.73 -6.67 6.24 -59.01 -0.37 -7.04 16 27 C 0.53 6.42 7.13 -10.86 -0.08 6.34 16 28 O -0.51 -8.11 17.83 5.56 0.10 -8.01 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.68 7.59 -51.93 -0.39 0.28 16 32 H 0.41 5.58 7.86 -40.82 -0.32 5.25 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.18 2.19 8.06 -52.49 -0.42 1.77 16 36 H 0.08 1.72 8.01 -51.93 -0.42 1.30 16 37 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.27 7.44 5.14 -40.82 -0.21 7.23 16 39 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.11 2.73 5.80 -51.93 -0.30 2.43 16 41 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 42 H 0.09 2.02 6.11 -51.93 -0.32 1.71 16 43 H 0.09 0.45 7.91 -51.93 -0.41 0.03 16 44 H 0.11 0.87 6.94 -51.92 -0.36 0.51 16 45 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.41 3.24 8.96 -40.82 -0.37 2.87 16 LS Contribution 381.81 15.07 5.75 5.75 Total: -1.00 -33.16 381.81 -7.88 -41.04 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -6.54 Total: 10.13 kcal Atomic # 6 Polarization: 11.38 SS G_CDS: -1.79 Total: 9.58 kcal Atomic # 7 Polarization: -69.06 SS G_CDS: -0.38 Total: -69.44 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: 0.18 Total: -15.99 kcal Atomic # 14 Polarization: 24.02 SS G_CDS: -5.11 Total: 18.92 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.16 -7.88 -41.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128488676.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.513 kcal (2) G-P(sol) polarization free energy of solvation -33.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.62 seconds