Wall clock time and date at job start Sat Apr 11 2020 08:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50702 * 110.43460 * 2 1 4 4 O 1.21285 * 120.00310 * 239.30140 * 3 2 1 5 5 N 1.34773 * 119.99871 * 59.30315 * 3 2 1 6 6 C 1.46501 * 120.00384 * 179.97438 * 5 3 2 7 7 C 1.50695 * 109.47707 * 180.02562 * 6 5 3 8 8 C 1.40072 * 126.12387 * 260.00150 * 7 6 5 9 9 N 1.31010 * 108.25577 * 180.02562 * 8 7 6 10 10 N 1.39741 * 108.17752 * 0.15564 * 9 8 7 11 11 C 1.34641 * 126.12742 * 79.99636 * 7 6 5 12 12 C 1.50631 * 127.92376 * 359.68264 * 11 7 6 13 13 N 1.47500 * 107.20649 * 169.70689 * 12 11 7 14 14 C 1.36940 * 121.00920 * 222.87219 * 13 12 11 15 15 H 1.08004 * 119.99931 * 341.14893 * 14 13 12 16 16 C 1.38813 * 119.99769 * 161.14475 * 14 13 12 17 17 N 1.31614 * 120.00057 * 325.46311 * 16 14 13 18 18 Si 1.86798 * 119.99951 * 145.46880 * 16 14 13 19 19 H 1.48502 * 109.47129 * 179.97438 * 18 16 14 20 20 H 1.48505 * 109.47122 * 299.99825 * 18 16 14 21 21 H 1.48507 * 109.47244 * 59.99583 * 18 16 14 22 22 C 1.47080 * 117.97934 * 42.60592 * 13 12 11 23 23 C 1.46560 * 127.32662 * 179.52516 * 10 9 8 24 24 C 1.54630 * 110.48605 * 237.46153 * 2 1 3 25 25 C 1.54824 * 101.60390 * 216.42893 * 24 2 1 26 26 N 1.46766 * 105.49597 * 25.43222 * 25 24 2 27 27 C 1.34417 * 111.29892 * 342.96099 * 26 25 24 28 28 O 1.21282 * 124.94318 * 180.43861 * 27 26 25 29 29 H 1.09002 * 109.46956 * 60.69292 * 1 2 3 30 30 H 1.08995 * 109.47184 * 180.69901 * 1 2 3 31 31 H 1.09005 * 109.46933 * 300.70185 * 1 2 3 32 32 H 0.97005 * 120.00561 * 359.97438 * 5 3 2 33 33 H 1.08999 * 109.47118 * 59.99344 * 6 5 3 34 34 H 1.09002 * 109.46742 * 299.99920 * 6 5 3 35 35 H 1.08001 * 125.87308 * 0.03475 * 8 7 6 36 36 H 1.09003 * 109.92059 * 50.22665 * 12 11 7 37 37 H 1.09002 * 109.77169 * 289.09949 * 12 11 7 38 38 H 0.97005 * 120.00249 * 354.09802 * 17 16 14 39 39 H 1.08999 * 109.51298 * 56.63594 * 22 13 12 40 40 H 1.09000 * 109.51669 * 176.73757 * 22 13 12 41 41 H 1.09003 * 109.50754 * 41.46820 * 23 10 9 42 42 H 1.09004 * 109.50372 * 281.34271 * 23 10 9 43 43 H 1.08998 * 110.96974 * 334.50924 * 24 2 1 44 44 H 1.09008 * 110.97012 * 98.27345 * 24 2 1 45 45 H 1.09003 * 110.25789 * 266.41335 * 25 24 2 46 46 H 1.09002 * 110.29040 * 144.46941 * 25 24 2 47 47 H 0.96999 * 124.34923 * 162.98609 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0562 1.4122 0.0000 4 8 2.7704 1.7933 -0.9031 5 7 1.7331 2.2517 1.0036 6 6 2.2450 3.6243 1.0040 7 6 1.7411 4.3481 2.2260 8 6 0.6633 5.2416 2.2707 9 7 0.5316 5.6644 3.5037 10 7 1.5217 5.0574 4.2808 11 6 2.2463 4.2518 3.4703 12 6 3.4068 3.4119 3.9359 13 7 3.7276 3.8354 5.3119 14 6 5.0258 4.0040 5.7136 15 1 5.8284 3.5502 5.1512 16 6 5.3102 4.7583 6.8437 17 7 4.5724 5.8080 7.1371 18 14 6.7402 4.2837 7.9479 19 1 6.8320 5.2422 9.0784 20 1 6.5236 2.9130 8.4767 21 1 8.0023 4.3189 7.1660 22 6 2.6105 4.0768 6.2377 23 6 1.7630 5.2408 5.7147 24 6 2.0712 -0.7791 -1.2211 25 6 3.3233 -1.4655 -0.6226 26 7 3.0583 -1.5786 0.8165 27 6 2.0595 -0.7623 1.1946 28 8 1.6438 -0.6524 2.3286 29 1 -0.3633 0.5030 -0.8962 30 1 -0.3633 -1.0275 0.0125 31 1 -0.3633 0.5247 0.8837 32 1 1.1616 1.9471 1.7259 33 1 1.9010 4.1406 0.1078 34 1 3.3348 3.6056 1.0169 35 1 0.0467 5.5319 1.4329 36 1 4.2671 3.5747 3.2866 37 1 3.1267 2.3585 3.9268 38 1 3.8850 6.1054 6.5206 39 1 1.9936 3.1807 6.3055 40 1 3.0022 4.3246 7.2242 41 1 0.8103 5.2655 6.2439 42 1 2.2947 6.1784 5.8773 43 1 1.3471 -1.5179 -1.5646 44 1 2.3449 -0.0989 -2.0278 45 1 4.2084 -0.8536 -0.7963 46 1 3.4575 -2.4548 -1.0603 47 1 3.5420 -2.1665 1.4175 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128488676.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:22:21 Heat of formation + Delta-G solvation = 12.412487 kcal Electronic energy + Delta-G solvation = -31647.850232 eV Core-core repulsion = 27446.001354 eV Total energy + Delta-G solvation = -4201.848878 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 2.33 seconds Orbital eigenvalues (eV) -42.64002 -42.18467 -39.91883 -38.43031 -37.49358 -36.15332 -34.49030 -34.25989 -33.58459 -31.54429 -30.63676 -29.61507 -27.77071 -26.76118 -26.18082 -25.08949 -23.63407 -23.21189 -22.59974 -21.86022 -20.68834 -20.11282 -19.08028 -18.67077 -18.34642 -17.59209 -17.17783 -16.82718 -16.58665 -16.28421 -16.18002 -15.76666 -15.64674 -15.48776 -15.22571 -14.99100 -14.87480 -14.70508 -14.65732 -14.17785 -14.13162 -13.59283 -13.45362 -13.39317 -13.30857 -13.19663 -13.08301 -12.71675 -12.60954 -12.34459 -12.29881 -12.11945 -11.91824 -11.79533 -11.64932 -11.19834 -10.85508 -10.58282 -10.27281 -10.15163 -10.13501 -9.56311 -9.21145 -8.45813 -5.46152 0.78160 1.16295 1.41073 1.51060 1.58865 1.62379 1.63899 1.84547 2.30817 2.45145 2.56114 3.00376 3.17472 3.23048 3.37190 3.46395 3.57565 3.63585 3.88469 4.00638 4.04206 4.06974 4.09761 4.17735 4.32274 4.40653 4.42302 4.50207 4.67197 4.68098 4.73485 4.75941 4.77297 4.85114 4.91060 5.02515 5.07404 5.10791 5.15514 5.34062 5.64351 5.67395 5.71865 5.89636 5.91235 6.23927 6.42139 6.68768 6.79107 7.04816 7.12138 7.55827 7.95950 8.83479 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012000 B = 0.003362 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.703108 B = 8327.167826 C = 9724.502337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.118 4.118 3 C 0.531 3.469 4 O -0.558 6.558 5 N -0.710 5.710 6 C 0.215 3.785 7 C -0.268 4.268 8 C 0.068 3.932 9 N -0.329 5.329 10 N -0.365 5.365 11 C 0.092 3.908 12 C 0.206 3.794 13 N -0.615 5.615 14 C -0.373 4.373 15 H 0.060 0.940 16 C -0.059 4.059 17 N -0.925 5.925 18 Si 1.107 2.893 19 H -0.290 1.290 20 H -0.280 1.280 21 H -0.278 1.278 22 C 0.133 3.867 23 C 0.119 3.881 24 C -0.110 4.110 25 C 0.095 3.905 26 N -0.720 5.720 27 C 0.520 3.480 28 O -0.560 6.560 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.058 0.942 32 H 0.406 0.594 33 H 0.095 0.905 34 H 0.056 0.944 35 H 0.222 0.778 36 H 0.074 0.926 37 H 0.056 0.944 38 H 0.261 0.739 39 H 0.044 0.956 40 H 0.091 0.909 41 H 0.103 0.897 42 H 0.065 0.935 43 H 0.120 0.880 44 H 0.106 0.894 45 H 0.070 0.930 46 H 0.120 0.880 47 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.220 -14.721 -18.052 24.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.124 4.124 3 C 0.317 3.683 4 O -0.437 6.437 5 N -0.361 5.361 6 C 0.092 3.908 7 C -0.281 4.281 8 C -0.118 4.118 9 N -0.149 5.149 10 N -0.146 5.146 11 C -0.040 4.040 12 C 0.079 3.921 13 N -0.339 5.339 14 C -0.502 4.502 15 H 0.078 0.922 16 C -0.257 4.257 17 N -0.566 5.566 18 Si 0.932 3.068 19 H -0.216 1.216 20 H -0.206 1.206 21 H -0.204 1.204 22 C 0.005 3.995 23 C -0.004 4.004 24 C -0.148 4.148 25 C -0.028 4.028 26 N -0.375 5.375 27 C 0.305 3.695 28 O -0.439 6.439 29 H 0.109 0.891 30 H 0.105 0.895 31 H 0.077 0.923 32 H 0.241 0.759 33 H 0.113 0.887 34 H 0.075 0.925 35 H 0.238 0.762 36 H 0.092 0.908 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.109 0.891 41 H 0.121 0.879 42 H 0.083 0.917 43 H 0.139 0.861 44 H 0.124 0.876 45 H 0.088 0.912 46 H 0.138 0.862 47 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -7.796 -13.143 -15.795 21.977 hybrid contribution -0.166 -0.680 -0.915 1.152 sum -7.962 -13.823 -16.709 23.102 Atomic orbital electron populations 1.21717 0.88198 1.04679 1.03816 1.21696 1.00746 0.92382 0.97618 1.20105 0.79951 0.86738 0.81546 1.90678 1.38236 1.77774 1.36989 1.46241 1.51662 1.12636 1.25515 1.19294 0.97346 0.80090 0.94094 1.19605 1.04274 1.10247 0.93925 1.24384 0.96930 0.95315 0.95192 1.77216 1.11407 1.21970 1.04329 1.48634 1.23582 1.33653 1.08765 1.21809 0.95785 0.94705 0.91675 1.19886 0.91866 0.94570 0.85781 1.44541 1.02721 1.80078 1.06558 1.20141 0.83904 1.31371 1.14734 0.92235 1.26980 1.05678 0.92427 1.00623 1.70987 1.24238 1.19783 1.41639 0.82970 0.73075 0.75801 0.75001 1.21567 1.20646 1.20427 1.21318 0.88198 0.94140 0.95819 1.22442 1.01144 1.01349 0.75476 1.22854 0.97225 0.99437 0.95270 1.22427 0.98426 1.03614 0.78380 1.46255 1.35839 1.43020 1.12361 1.20714 0.80161 0.80014 0.88653 1.90782 1.62672 1.67485 1.22936 0.89107 0.89489 0.92339 0.75907 0.88702 0.92546 0.76189 0.90791 0.92685 0.92756 0.93777 0.89135 0.87880 0.91731 0.86133 0.87569 0.91213 0.86171 0.74096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.82 8.31 71.98 0.60 -1.22 16 2 C -0.12 -2.17 0.74 -52.93 -0.04 -2.21 16 3 C 0.53 13.04 6.55 87.66 0.57 13.61 16 4 O -0.56 -16.01 15.46 -3.05 -0.05 -16.06 16 5 N -0.71 -18.35 5.41 -466.79 -2.52 -20.88 16 6 C 0.22 5.94 5.95 85.63 0.51 6.45 16 7 C -0.27 -8.66 5.46 -20.25 -0.11 -8.77 16 8 C 0.07 2.07 11.97 85.26 1.02 3.09 16 9 N -0.33 -12.39 12.61 -56.80 -0.72 -13.11 16 10 N -0.37 -15.11 4.03 -334.57 -1.35 -16.46 16 11 C 0.09 3.64 6.70 41.18 0.28 3.91 16 12 C 0.21 8.86 6.63 85.42 0.57 9.43 16 13 N -0.62 -30.62 2.95 -702.02 -2.07 -32.69 16 14 C -0.37 -20.44 9.53 84.03 0.80 -19.64 16 15 H 0.06 3.28 8.02 -2.91 -0.02 3.26 16 16 C -0.06 -3.21 4.54 84.86 0.39 -2.83 16 17 N -0.92 -53.18 12.17 21.65 0.26 -52.92 16 18 Si 1.11 49.13 30.03 68.60 2.06 51.19 16 19 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 20 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 21 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 22 C 0.13 6.09 5.48 86.33 0.47 6.56 16 23 C 0.12 5.05 7.22 86.43 0.62 5.67 16 24 C -0.11 -1.28 6.06 31.77 0.19 -1.08 16 25 C 0.09 1.05 7.79 86.95 0.68 1.73 16 26 N -0.72 -12.10 6.24 -459.21 -2.87 -14.97 16 27 C 0.52 12.12 7.13 87.90 0.63 12.74 16 28 O -0.56 -17.83 17.83 -3.03 -0.05 -17.88 16 29 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.06 1.02 7.59 -2.38 -0.02 1.00 16 32 H 0.41 10.91 7.86 -92.70 -0.73 10.18 16 33 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.22 4.54 8.06 -2.91 -0.02 4.51 16 36 H 0.07 3.23 8.01 -2.39 -0.02 3.21 16 37 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.26 15.03 5.14 -92.70 -0.48 14.56 16 39 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.09 4.56 5.80 -2.39 -0.01 4.55 16 41 H 0.10 3.79 8.14 -2.39 -0.02 3.77 16 42 H 0.06 3.04 6.11 -2.38 -0.01 3.03 16 43 H 0.12 0.67 7.91 -2.39 -0.02 0.66 16 44 H 0.11 1.40 6.94 -2.38 -0.02 1.38 16 45 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 47 H 0.42 6.06 8.96 -92.71 -0.83 5.23 16 Total: -1.00 -73.57 381.81 -0.36 -73.94 By element: Atomic # 1 Polarization: 32.62 SS G_CDS: -0.24 Total: 32.38 kcal Atomic # 6 Polarization: 20.27 SS G_CDS: 7.17 Total: 27.45 kcal Atomic # 7 Polarization: -141.76 SS G_CDS: -9.26 Total: -151.02 kcal Atomic # 8 Polarization: -33.84 SS G_CDS: -0.10 Total: -33.94 kcal Atomic # 14 Polarization: 49.13 SS G_CDS: 2.06 Total: 51.19 kcal Total: -73.57 -0.36 -73.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128488676.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.350 kcal (2) G-P(sol) polarization free energy of solvation -73.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.33 seconds