Wall clock time and date at job start Sat Apr 11 2020 08:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32707 * 118.97421 * 2 1 4 4 N 1.38642 * 121.34282 * 179.97438 * 3 2 1 5 5 N 1.28654 * 131.88477 * 180.32806 * 4 3 2 6 6 C 1.32279 * 110.93992 * 180.15608 * 5 4 3 7 7 C 1.47698 * 126.19330 * 179.80784 * 6 5 4 8 8 O 1.21576 * 119.99836 * 179.69176 * 7 6 5 9 9 N 1.34778 * 120.00059 * 359.69260 * 7 6 5 10 10 C 1.46499 * 119.99771 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.47391 * 34.99730 * 10 9 7 12 12 C 1.53002 * 109.46799 * 274.99826 * 10 9 7 13 13 C 1.53000 * 109.46840 * 155.00060 * 10 9 7 14 14 C 1.53005 * 109.46867 * 294.99527 * 13 10 9 15 15 H 1.08994 * 109.47042 * 55.00282 * 14 13 10 16 16 C 1.53003 * 109.46902 * 175.00512 * 14 13 10 17 17 N 1.46501 * 109.47278 * 294.99980 * 14 13 10 18 18 C 1.36940 * 119.99786 * 155.00016 * 17 14 13 19 19 H 1.07997 * 119.99662 * 359.97438 * 18 17 14 20 20 C 1.38810 * 119.99761 * 180.02562 * 18 17 14 21 21 N 1.31617 * 119.99676 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 120.00131 * 0.02562 * 20 18 17 23 23 H 1.48509 * 109.47271 * 90.00155 * 22 20 18 24 24 H 1.48499 * 109.47119 * 209.99857 * 22 20 18 25 25 H 1.48497 * 109.47224 * 330.00092 * 22 20 18 26 26 C 1.40663 * 107.60858 * 359.54524 * 6 5 4 27 27 C 1.37299 * 118.90636 * 0.02562 * 4 3 2 28 28 C 1.46579 * 119.27007 * 0.02562 * 27 4 3 29 29 O 1.21763 * 120.78472 * 180.02562 * 28 27 4 30 30 N 1.35165 * 118.43139 * 359.97438 * 28 27 4 31 31 H 0.97003 * 120.00024 * 180.02562 * 30 28 27 32 32 H 1.09006 * 109.46989 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47440 * 300.01582 * 1 2 3 34 34 H 1.09003 * 109.47397 * 60.01827 * 1 2 3 35 35 H 1.08004 * 119.33388 * 359.97438 * 3 2 1 36 36 H 0.96998 * 119.99599 * 359.97438 * 9 7 6 37 37 H 1.08996 * 109.47407 * 60.00500 * 12 10 9 38 38 H 1.09000 * 109.46986 * 180.02562 * 12 10 9 39 39 H 1.09002 * 109.47075 * 299.99543 * 12 10 9 40 40 H 1.08990 * 109.47170 * 54.99738 * 13 10 9 41 41 H 1.09001 * 109.46952 * 174.99815 * 13 10 9 42 42 H 1.08994 * 109.46912 * 180.02562 * 16 14 13 43 43 H 1.09005 * 109.46911 * 299.99843 * 16 14 13 44 44 H 1.08999 * 109.47084 * 59.99744 * 16 14 13 45 45 H 0.97003 * 120.00154 * 335.00823 * 17 14 13 46 46 H 0.97002 * 119.99836 * 180.02562 * 21 20 18 47 47 H 1.08002 * 127.41443 * 180.24135 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1499 1.1610 0.0000 4 7 3.5351 1.2183 0.0005 5 7 4.3537 2.2108 0.0061 6 6 5.6076 1.7894 0.0006 7 6 6.8140 2.6414 0.0004 8 8 7.9179 2.1320 0.0007 9 7 6.6912 3.9836 0.0000 10 6 7.8878 4.8286 -0.0007 11 1 8.6701 4.3504 -0.5903 12 6 8.3774 5.0206 1.4361 13 6 7.5500 6.1905 -0.6107 14 6 7.1800 6.0115 -2.0845 15 1 6.3727 5.2844 -2.1707 16 6 6.7226 7.3525 -2.6620 17 7 8.3490 5.5335 -2.8270 18 6 8.1809 4.8270 -3.9879 19 1 7.1865 4.6219 -4.3559 20 6 9.2885 4.3737 -4.6911 21 7 9.1268 3.6942 -5.8066 22 14 11.0084 4.7267 -4.0534 23 1 11.4387 3.6258 -3.1544 24 1 11.9495 4.8279 -5.1976 25 1 11.0043 6.0070 -3.3011 26 6 5.5839 0.3829 0.0011 27 6 4.2479 0.0448 0.0005 28 6 3.5271 -1.2315 -0.0006 29 8 4.1315 -2.2886 -0.0002 30 7 2.1757 -1.2074 -0.0011 31 1 1.6757 -2.0386 -0.0015 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5141 0.8898 34 1 -0.3634 0.5136 -0.8902 35 1 1.5825 2.0800 -0.0004 36 1 5.8104 4.3899 -0.0006 37 1 8.6181 4.0505 1.8707 38 1 9.2675 5.6498 1.4356 39 1 7.5952 5.4990 2.0256 40 1 6.7082 6.6296 -0.0755 41 1 8.4149 6.8491 -0.5306 42 1 6.4586 7.2249 -3.7118 43 1 5.8528 7.7082 -2.1096 44 1 7.5300 8.0796 -2.5758 45 1 9.2422 5.7174 -2.4961 46 1 9.9009 3.3770 -6.2978 47 1 6.4305 -0.2876 0.0012 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135081990.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:22:44 Heat of formation + Delta-G solvation = 40.131956 kcal Electronic energy + Delta-G solvation = -30542.724822 eV Core-core repulsion = 26342.077951 eV Total energy + Delta-G solvation = -4200.646871 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 2.38 seconds Orbital eigenvalues (eV) -43.36947 -40.37276 -39.33215 -37.81548 -36.89369 -34.54196 -33.59848 -32.29545 -31.98653 -31.21373 -30.65486 -29.17237 -27.57069 -26.37086 -24.57625 -23.94068 -23.22182 -22.65217 -21.06497 -20.35956 -19.77599 -19.32785 -18.91256 -17.77665 -17.41978 -16.94515 -16.50706 -15.95116 -15.28653 -15.25448 -14.75758 -14.63964 -14.44959 -14.20796 -14.07266 -13.98651 -13.65713 -13.52705 -13.26860 -13.14655 -13.00770 -12.59927 -12.35291 -12.09968 -11.97696 -11.93124 -11.68208 -11.41244 -11.19754 -10.84757 -10.75542 -10.60848 -10.47811 -10.41846 -10.23320 -9.90214 -9.89873 -9.58549 -9.48588 -8.83267 -8.76633 -8.27456 -7.16553 -5.66576 -3.01283 0.50156 0.96876 1.82278 1.91199 2.22453 2.88594 3.26789 3.46179 3.50461 3.55432 3.55556 3.66886 3.86581 4.06008 4.44060 4.69853 4.80114 4.81903 4.92849 5.00610 5.04627 5.21820 5.25159 5.30139 5.34845 5.46731 5.58620 5.64448 5.81812 5.86200 5.92888 5.93457 6.05565 6.06175 6.13547 6.23768 6.29517 6.37043 6.48171 6.52320 6.57400 6.77034 6.87762 7.04265 7.27537 7.49664 7.81223 8.08927 8.44919 8.52295 9.31030 10.03871 10.23006 11.52153 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011731 B = 0.002864 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.185677 B = 9774.566535 C =10232.675100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.119 3.881 3 C -0.010 4.010 4 N -0.194 5.194 5 N -0.233 5.233 6 C 0.001 3.999 7 C 0.607 3.393 8 O -0.519 6.519 9 N -0.700 5.700 10 C 0.142 3.858 11 H 0.102 0.898 12 C -0.162 4.162 13 C -0.134 4.134 14 C 0.176 3.824 15 H 0.055 0.945 16 C -0.165 4.165 17 N -0.745 5.745 18 C -0.237 4.237 19 H 0.087 0.913 20 C 0.005 3.995 21 N -0.936 5.936 22 Si 0.881 3.119 23 H -0.282 1.282 24 H -0.293 1.293 25 H -0.277 1.277 26 C -0.080 4.080 27 C -0.076 4.076 28 C 0.586 3.414 29 O -0.499 6.499 30 N -0.640 5.640 31 H 0.423 0.577 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.185 0.815 36 H 0.402 0.598 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.053 0.947 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.056 0.944 43 H 0.037 0.963 44 H 0.044 0.956 45 H 0.360 0.640 46 H 0.258 0.742 47 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.959 -3.194 17.856 27.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.015 3.985 3 C -0.128 4.128 4 N 0.022 4.978 5 N -0.071 5.071 6 C -0.154 4.154 7 C 0.390 3.610 8 O -0.392 6.392 9 N -0.351 5.351 10 C 0.039 3.961 11 H 0.120 0.880 12 C -0.221 4.221 13 C -0.173 4.173 14 C 0.066 3.934 15 H 0.073 0.927 16 C -0.225 4.225 17 N -0.388 5.388 18 C -0.367 4.367 19 H 0.105 0.895 20 C -0.191 4.191 21 N -0.584 5.584 22 Si 0.712 3.288 23 H -0.208 1.208 24 H -0.220 1.220 25 H -0.204 1.204 26 C -0.110 4.110 27 C -0.198 4.198 28 C 0.375 3.625 29 O -0.371 6.371 30 N -0.283 5.283 31 H 0.263 0.737 32 H 0.099 0.901 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.202 0.798 36 H 0.237 0.763 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.075 0.925 43 H 0.056 0.944 44 H 0.064 0.936 45 H 0.192 0.808 46 H 0.068 0.932 47 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -20.414 -3.180 17.657 27.177 hybrid contribution 0.991 -0.540 0.135 1.137 sum -19.422 -3.720 17.792 26.601 Atomic orbital electron populations 1.20910 0.86099 1.04798 1.04984 1.19752 0.95523 0.83735 0.99481 1.20503 0.78239 0.99468 1.14581 1.42920 1.05457 1.03527 1.45944 1.73617 0.99883 1.14701 1.18903 1.22087 0.90979 0.93485 1.08844 1.16607 0.85807 0.81867 0.76754 1.90842 1.25159 1.73703 1.49542 1.45761 1.10339 1.05045 1.73962 1.21077 0.87982 0.90997 0.96094 0.88005 1.22203 1.01076 1.02119 0.96678 1.22220 1.02086 0.95477 0.97523 1.20206 0.90981 0.93880 0.88310 0.92669 1.22417 0.99293 0.99152 1.01645 1.42774 1.02391 1.66404 1.27276 1.19000 0.94734 1.25461 0.97481 0.89518 1.24636 0.97232 1.00161 0.97041 1.69700 1.29204 1.42293 1.17184 0.86594 0.86180 0.78073 0.77995 1.20842 1.21964 1.20362 1.21815 0.94413 0.94396 1.00342 1.21687 0.93319 0.87116 1.17675 1.17029 0.81084 0.87761 0.76580 1.90974 1.66694 1.31147 1.48317 1.43549 1.06921 1.08908 1.68947 0.73749 0.90072 0.88814 0.88692 0.79791 0.76295 0.92256 0.91687 0.92809 0.91423 0.90575 0.92472 0.94374 0.93648 0.80761 0.93210 0.80302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.08 10.06 36.01 0.36 0.28 16 2 C 0.12 0.62 6.76 -81.69 -0.55 0.07 16 3 C -0.01 -0.08 10.68 -16.35 -0.17 -0.25 16 4 N -0.19 -2.35 3.65 -9.38 -0.03 -2.39 16 5 N -0.23 -3.26 11.80 33.32 0.39 -2.87 16 6 C 0.00 0.02 7.09 -82.90 -0.59 -0.57 16 7 C 0.61 10.86 7.79 -12.40 -0.10 10.77 16 8 O -0.52 -11.09 16.57 5.30 0.09 -11.00 16 9 N -0.70 -10.82 4.45 -54.79 -0.24 -11.06 16 10 C 0.14 2.24 2.52 -67.93 -0.17 2.07 16 11 H 0.10 2.03 7.05 -51.93 -0.37 1.66 16 12 C -0.16 -2.11 9.48 37.16 0.35 -1.76 16 13 C -0.13 -1.95 4.29 -26.73 -0.11 -2.06 16 14 C 0.18 3.27 2.84 -67.93 -0.19 3.07 16 15 H 0.06 1.09 7.56 -51.93 -0.39 0.70 16 16 C -0.17 -2.82 9.49 37.16 0.35 -2.47 16 17 N -0.75 -17.60 4.30 -53.42 -0.23 -17.83 16 18 C -0.24 -6.81 10.41 -15.06 -0.16 -6.96 16 19 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 20 C 0.00 0.14 5.50 -17.43 -0.10 0.05 16 21 N -0.94 -30.39 13.97 55.49 0.78 -29.62 16 22 Si 0.88 23.06 27.74 -169.99 -4.71 18.34 16 23 H -0.28 -7.49 7.11 56.52 0.40 -7.09 16 24 H -0.29 -7.76 7.11 56.52 0.40 -7.36 16 25 H -0.28 -6.74 6.52 56.52 0.37 -6.37 16 26 C -0.08 -1.24 10.86 -38.82 -0.42 -1.66 16 27 C -0.08 -1.04 6.97 -82.21 -0.57 -1.61 16 28 C 0.59 7.07 7.96 -12.72 -0.10 6.97 16 29 O -0.50 -7.51 17.99 5.13 0.09 -7.42 16 30 N -0.64 -4.56 5.37 -9.57 -0.05 -4.61 16 31 H 0.42 1.80 8.64 -40.82 -0.35 1.44 16 32 H 0.08 -0.03 7.89 -51.93 -0.41 -0.44 16 33 H 0.09 -0.04 8.14 -51.93 -0.42 -0.46 16 34 H 0.09 0.00 8.14 -51.93 -0.42 -0.42 16 35 H 0.19 0.79 8.03 -52.48 -0.42 0.37 16 36 H 0.40 5.32 8.31 -40.82 -0.34 4.98 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.36 8.44 5.66 -40.82 -0.23 8.21 16 46 H 0.26 8.02 8.31 -40.82 -0.34 7.68 16 47 H 0.18 2.67 8.06 -52.49 -0.42 2.25 16 LS Contribution 398.24 15.07 6.00 6.00 Total: -1.00 -39.16 398.24 -6.85 -46.01 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -6.75 Total: 10.50 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: -2.17 Total: 5.94 kcal Atomic # 7 Polarization: -68.98 SS G_CDS: 0.61 Total: -68.37 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: 0.18 Total: -18.42 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -4.71 Total: 18.34 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -39.16 -6.85 -46.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135081990.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.144 kcal (2) G-P(sol) polarization free energy of solvation -39.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.38 seconds