Wall clock time and date at job start Sat Apr 11 2020 08:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32707 * 118.97421 * 2 1 4 4 N 1.38642 * 121.34282 * 179.97438 * 3 2 1 5 5 N 1.28654 * 131.88477 * 180.32806 * 4 3 2 6 6 C 1.32279 * 110.93992 * 180.15608 * 5 4 3 7 7 C 1.47698 * 126.19330 * 179.80784 * 6 5 4 8 8 O 1.21576 * 119.99836 * 179.69176 * 7 6 5 9 9 N 1.34778 * 120.00059 * 359.69260 * 7 6 5 10 10 C 1.46499 * 119.99771 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.47391 * 34.99730 * 10 9 7 12 12 C 1.53002 * 109.46799 * 274.99826 * 10 9 7 13 13 C 1.53000 * 109.46840 * 155.00060 * 10 9 7 14 14 C 1.53005 * 109.46867 * 294.99527 * 13 10 9 15 15 H 1.08994 * 109.47042 * 55.00282 * 14 13 10 16 16 C 1.53003 * 109.46902 * 175.00512 * 14 13 10 17 17 N 1.46501 * 109.47278 * 294.99980 * 14 13 10 18 18 C 1.36940 * 119.99786 * 155.00016 * 17 14 13 19 19 H 1.07997 * 119.99662 * 359.97438 * 18 17 14 20 20 C 1.38810 * 119.99761 * 180.02562 * 18 17 14 21 21 N 1.31617 * 119.99676 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 120.00131 * 0.02562 * 20 18 17 23 23 H 1.48509 * 109.47271 * 90.00155 * 22 20 18 24 24 H 1.48499 * 109.47119 * 209.99857 * 22 20 18 25 25 H 1.48497 * 109.47224 * 330.00092 * 22 20 18 26 26 C 1.40663 * 107.60858 * 359.54524 * 6 5 4 27 27 C 1.37299 * 118.90636 * 0.02562 * 4 3 2 28 28 C 1.46579 * 119.27007 * 0.02562 * 27 4 3 29 29 O 1.21763 * 120.78472 * 180.02562 * 28 27 4 30 30 N 1.35165 * 118.43139 * 359.97438 * 28 27 4 31 31 H 0.97003 * 120.00024 * 180.02562 * 30 28 27 32 32 H 1.09006 * 109.46989 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47440 * 300.01582 * 1 2 3 34 34 H 1.09003 * 109.47397 * 60.01827 * 1 2 3 35 35 H 1.08004 * 119.33388 * 359.97438 * 3 2 1 36 36 H 0.96998 * 119.99599 * 359.97438 * 9 7 6 37 37 H 1.08996 * 109.47407 * 60.00500 * 12 10 9 38 38 H 1.09000 * 109.46986 * 180.02562 * 12 10 9 39 39 H 1.09002 * 109.47075 * 299.99543 * 12 10 9 40 40 H 1.08990 * 109.47170 * 54.99738 * 13 10 9 41 41 H 1.09001 * 109.46952 * 174.99815 * 13 10 9 42 42 H 1.08994 * 109.46912 * 180.02562 * 16 14 13 43 43 H 1.09005 * 109.46911 * 299.99843 * 16 14 13 44 44 H 1.08999 * 109.47084 * 59.99744 * 16 14 13 45 45 H 0.97003 * 120.00154 * 335.00823 * 17 14 13 46 46 H 0.97002 * 119.99836 * 180.02562 * 21 20 18 47 47 H 1.08002 * 127.41443 * 180.24135 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1499 1.1610 0.0000 4 7 3.5351 1.2183 0.0005 5 7 4.3537 2.2108 0.0061 6 6 5.6076 1.7894 0.0006 7 6 6.8140 2.6414 0.0004 8 8 7.9179 2.1320 0.0007 9 7 6.6912 3.9836 0.0000 10 6 7.8878 4.8286 -0.0007 11 1 8.6701 4.3504 -0.5903 12 6 8.3774 5.0206 1.4361 13 6 7.5500 6.1905 -0.6107 14 6 7.1800 6.0115 -2.0845 15 1 6.3727 5.2844 -2.1707 16 6 6.7226 7.3525 -2.6620 17 7 8.3490 5.5335 -2.8270 18 6 8.1809 4.8270 -3.9879 19 1 7.1865 4.6219 -4.3559 20 6 9.2885 4.3737 -4.6911 21 7 9.1268 3.6942 -5.8066 22 14 11.0084 4.7267 -4.0534 23 1 11.4387 3.6258 -3.1544 24 1 11.9495 4.8279 -5.1976 25 1 11.0043 6.0070 -3.3011 26 6 5.5839 0.3829 0.0011 27 6 4.2479 0.0448 0.0005 28 6 3.5271 -1.2315 -0.0006 29 8 4.1315 -2.2886 -0.0002 30 7 2.1757 -1.2074 -0.0011 31 1 1.6757 -2.0386 -0.0015 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5141 0.8898 34 1 -0.3634 0.5136 -0.8902 35 1 1.5825 2.0800 -0.0004 36 1 5.8104 4.3899 -0.0006 37 1 8.6181 4.0505 1.8707 38 1 9.2675 5.6498 1.4356 39 1 7.5952 5.4990 2.0256 40 1 6.7082 6.6296 -0.0755 41 1 8.4149 6.8491 -0.5306 42 1 6.4586 7.2249 -3.7118 43 1 5.8528 7.7082 -2.1096 44 1 7.5300 8.0796 -2.5758 45 1 9.2422 5.7174 -2.4961 46 1 9.9009 3.3770 -6.2978 47 1 6.4305 -0.2876 0.0012 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135081990.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:22:40 Heat of formation + Delta-G solvation = 8.774220 kcal Electronic energy + Delta-G solvation = -30544.084596 eV Core-core repulsion = 26342.077951 eV Total energy + Delta-G solvation = -4202.006645 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 3.51 seconds Orbital eigenvalues (eV) -44.37013 -41.33733 -40.62826 -38.68785 -38.37627 -36.17284 -34.57498 -34.07510 -32.93987 -32.18407 -31.97187 -30.94734 -28.24930 -27.59207 -25.58628 -25.34844 -24.83036 -23.51380 -22.31916 -21.65295 -21.30104 -20.32272 -19.78829 -19.65971 -18.58355 -17.90807 -17.55642 -17.30746 -16.66510 -16.30680 -16.22454 -15.96496 -15.74108 -15.50162 -15.23039 -14.95760 -14.61050 -14.54321 -14.42026 -14.30723 -14.06939 -14.01430 -13.44508 -13.26647 -13.24835 -13.01125 -12.83259 -12.64350 -12.50690 -12.49939 -12.29781 -12.00885 -11.88311 -11.77674 -11.69574 -11.47906 -11.43527 -11.33061 -10.96135 -10.67772 -10.08337 -9.26313 -9.04707 -8.00843 -5.30989 -0.37631 -0.02002 0.74789 1.04427 1.33337 1.41068 1.44858 1.44984 1.99325 2.05746 2.24931 2.49224 2.75092 2.95809 3.32442 3.55366 3.66281 3.74388 3.84468 3.94697 4.08268 4.15977 4.30017 4.35420 4.47049 4.52506 4.67378 4.72202 4.78124 4.83255 4.84669 4.90114 4.91651 5.01535 5.09177 5.16874 5.20215 5.22110 5.34189 5.37686 5.44969 5.55492 5.61602 5.71907 5.80208 6.24092 6.29942 6.50290 6.63915 7.11954 7.14650 7.90531 8.06945 9.21583 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011731 B = 0.002864 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.185677 B = 9774.566535 C =10232.675100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.154 3.846 3 C -0.053 4.053 4 N -0.173 5.173 5 N -0.230 5.230 6 C -0.027 4.027 7 C 0.601 3.399 8 O -0.568 6.568 9 N -0.688 5.688 10 C 0.138 3.862 11 H 0.054 0.946 12 C -0.152 4.152 13 C -0.120 4.120 14 C 0.165 3.835 15 H 0.038 0.962 16 C -0.156 4.156 17 N -0.748 5.748 18 C -0.213 4.213 19 H 0.050 0.950 20 C -0.070 4.070 21 N -0.989 5.989 22 Si 0.949 3.051 23 H -0.291 1.291 24 H -0.297 1.297 25 H -0.242 1.242 26 C -0.113 4.113 27 C -0.088 4.088 28 C 0.584 3.416 29 O -0.538 6.538 30 N -0.619 5.619 31 H 0.441 0.559 32 H 0.100 0.900 33 H 0.118 0.882 34 H 0.113 0.887 35 H 0.220 0.780 36 H 0.414 0.586 37 H 0.038 0.962 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.111 0.889 41 H 0.093 0.907 42 H 0.024 0.976 43 H 0.079 0.921 44 H 0.053 0.947 45 H 0.363 0.637 46 H 0.254 0.746 47 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.326 -0.967 20.345 31.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.050 3.950 3 C -0.169 4.169 4 N 0.042 4.958 5 N -0.071 5.071 6 C -0.179 4.179 7 C 0.385 3.615 8 O -0.446 6.446 9 N -0.338 5.338 10 C 0.034 3.966 11 H 0.073 0.927 12 C -0.211 4.211 13 C -0.158 4.158 14 C 0.058 3.942 15 H 0.056 0.944 16 C -0.215 4.215 17 N -0.392 5.392 18 C -0.345 4.345 19 H 0.068 0.932 20 C -0.260 4.260 21 N -0.640 5.640 22 Si 0.777 3.223 23 H -0.218 1.218 24 H -0.223 1.223 25 H -0.166 1.166 26 C -0.143 4.143 27 C -0.211 4.211 28 C 0.373 3.627 29 O -0.413 6.413 30 N -0.263 5.263 31 H 0.284 0.716 32 H 0.119 0.881 33 H 0.136 0.864 34 H 0.131 0.869 35 H 0.237 0.763 36 H 0.251 0.749 37 H 0.057 0.943 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.130 0.870 41 H 0.111 0.889 42 H 0.043 0.957 43 H 0.097 0.903 44 H 0.072 0.928 45 H 0.196 0.804 46 H 0.063 0.937 47 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -23.868 -0.863 20.202 31.282 hybrid contribution 1.641 -1.311 -0.618 2.189 sum -22.227 -2.174 19.584 29.703 Atomic orbital electron populations 1.21191 0.81694 1.06776 1.06892 1.20645 0.97668 0.82002 0.94731 1.21429 0.76100 1.02020 1.17302 1.43385 1.06978 1.02511 1.42955 1.73535 0.99184 1.14896 1.19486 1.21771 0.91318 0.93373 1.11457 1.16922 0.85810 0.82696 0.76081 1.90796 1.27069 1.74668 1.52060 1.45707 1.11080 1.04304 1.72748 1.21091 0.86859 0.91131 0.97479 0.92741 1.22110 1.02624 1.01693 0.94624 1.22153 1.04511 0.94929 0.94236 1.20513 0.88791 0.94166 0.90732 0.94423 1.22270 1.01236 0.97983 1.00055 1.42808 1.04299 1.66010 1.26063 1.18945 0.92970 1.24111 0.98428 0.93155 1.25450 1.01716 1.01178 0.97702 1.69885 1.30110 1.44795 1.19229 0.85490 0.80573 0.79033 0.77233 1.21832 1.22346 1.16610 1.21814 0.95468 0.94485 1.02508 1.21827 0.93069 0.88513 1.17697 1.16957 0.82589 0.86517 0.76628 1.90953 1.67957 1.31985 1.50440 1.43529 1.05288 1.10846 1.66615 0.71625 0.88143 0.86376 0.86865 0.76323 0.74856 0.94252 0.90079 0.89922 0.87050 0.88883 0.95661 0.90267 0.92766 0.80400 0.93721 0.81564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.43 10.06 71.24 0.72 1.15 16 2 C 0.15 1.04 6.76 40.41 0.27 1.31 16 3 C -0.05 -0.64 10.68 82.44 0.88 0.24 16 4 N -0.17 -4.12 3.65 -183.58 -0.67 -4.79 16 5 N -0.23 -6.53 11.80 -48.49 -0.57 -7.10 16 6 C -0.03 -0.93 7.09 42.17 0.30 -0.63 16 7 C 0.60 22.97 7.79 86.74 0.68 23.64 16 8 O -0.57 -26.43 16.57 -3.95 -0.07 -26.49 16 9 N -0.69 -21.45 4.45 -445.54 -1.98 -23.43 16 10 C 0.14 4.25 2.52 44.99 0.11 4.36 16 11 H 0.05 2.23 7.05 -2.39 -0.02 2.21 16 12 C -0.15 -3.68 9.48 71.98 0.68 -3.00 16 13 C -0.12 -3.10 4.29 30.60 0.13 -2.97 16 14 C 0.17 5.94 2.84 44.99 0.13 6.06 16 15 H 0.04 1.49 7.56 -2.39 -0.02 1.47 16 16 C -0.16 -4.93 9.49 71.98 0.68 -4.25 16 17 N -0.75 -35.33 4.30 -322.93 -1.39 -36.72 16 18 C -0.21 -12.68 10.41 84.03 0.87 -11.80 16 19 H 0.05 3.30 8.06 -2.91 -0.02 3.28 16 20 C -0.07 -4.37 5.50 84.86 0.47 -3.90 16 21 N -0.99 -67.21 13.97 21.65 0.30 -66.91 16 22 Si 0.95 48.91 27.74 68.60 1.90 50.81 16 23 H -0.29 -15.36 7.11 99.48 0.71 -14.65 16 24 H -0.30 -15.36 7.11 99.48 0.71 -14.66 16 25 H -0.24 -10.92 6.52 99.48 0.65 -10.27 16 26 C -0.11 -3.85 10.86 22.76 0.25 -3.60 16 27 C -0.09 -2.49 6.97 40.36 0.28 -2.21 16 28 C 0.58 14.10 7.96 86.36 0.69 14.79 16 29 O -0.54 -16.80 17.99 -4.55 -0.08 -16.88 16 30 N -0.62 -7.35 5.37 -302.16 -1.62 -8.98 16 31 H 0.44 2.40 8.64 -92.71 -0.80 1.60 16 32 H 0.10 -0.67 7.89 -2.38 -0.02 -0.69 16 33 H 0.12 -0.84 8.14 -2.39 -0.02 -0.85 16 34 H 0.11 -0.65 8.14 -2.39 -0.02 -0.67 16 35 H 0.22 0.98 8.03 -2.91 -0.02 0.96 16 36 H 0.41 10.61 8.31 -92.71 -0.77 9.84 16 37 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.08 1.52 8.14 -2.39 -0.02 1.51 16 40 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 44 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.36 16.64 5.66 -92.71 -0.52 16.12 16 46 H 0.25 16.56 8.31 -92.71 -0.77 15.79 16 47 H 0.17 5.80 8.06 -2.91 -0.02 5.78 16 Total: -1.00 -95.08 398.24 1.84 -93.24 By element: Atomic # 1 Polarization: 29.16 SS G_CDS: -1.12 Total: 28.04 kcal Atomic # 6 Polarization: 12.06 SS G_CDS: 7.14 Total: 19.20 kcal Atomic # 7 Polarization: -142.00 SS G_CDS: -5.93 Total: -147.93 kcal Atomic # 8 Polarization: -43.22 SS G_CDS: -0.15 Total: -43.37 kcal Atomic # 14 Polarization: 48.91 SS G_CDS: 1.90 Total: 50.81 kcal Total: -95.08 1.84 -93.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135081990.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.016 kcal (2) G-P(sol) polarization free energy of solvation -95.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.51 seconds