Wall clock time and date at job start Sat Apr 11 2020 08:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32716 * 118.97445 * 2 1 4 4 N 1.38646 * 121.34237 * 180.02562 * 3 2 1 5 5 N 1.28652 * 131.87829 * 180.30695 * 4 3 2 6 6 C 1.32272 * 110.93392 * 180.13311 * 5 4 3 7 7 C 1.47700 * 126.19677 * 179.81198 * 6 5 4 8 8 O 1.21575 * 120.00463 * 179.69038 * 7 6 5 9 9 N 1.34781 * 119.99455 * 359.69008 * 7 6 5 10 10 C 1.46500 * 119.99835 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.47239 * 325.00010 * 10 9 7 12 12 C 1.53005 * 109.46961 * 85.00014 * 10 9 7 13 13 C 1.52996 * 109.47059 * 204.99719 * 10 9 7 14 14 C 1.52997 * 109.46894 * 65.00370 * 13 10 9 15 15 H 1.09000 * 109.47140 * 304.99571 * 14 13 10 16 16 C 1.53006 * 109.47164 * 184.99623 * 14 13 10 17 17 N 1.46500 * 109.47204 * 64.99698 * 14 13 10 18 18 C 1.36936 * 119.99910 * 204.99560 * 17 14 13 19 19 H 1.07996 * 119.99948 * 0.02562 * 18 17 14 20 20 C 1.38815 * 119.99722 * 180.02562 * 18 17 14 21 21 N 1.31623 * 119.99641 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 120.00340 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47212 * 89.99907 * 22 20 18 24 24 H 1.48502 * 109.47080 * 209.99958 * 22 20 18 25 25 H 1.48507 * 109.46915 * 329.99961 * 22 20 18 26 26 C 1.40664 * 107.61077 * 359.54833 * 6 5 4 27 27 C 1.37288 * 118.90535 * 359.95567 * 4 3 2 28 28 C 1.46581 * 119.27292 * 0.02570 * 27 4 3 29 29 O 1.21763 * 120.78166 * 180.02562 * 28 27 4 30 30 N 1.35166 * 118.43405 * 359.97438 * 28 27 4 31 31 H 0.96998 * 119.99845 * 180.02562 * 30 28 27 32 32 H 1.09005 * 109.46986 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47032 * 300.01710 * 1 2 3 34 34 H 1.08994 * 109.47076 * 60.02298 * 1 2 3 35 35 H 1.08002 * 119.32704 * 0.02562 * 3 2 1 36 36 H 0.97002 * 120.00172 * 359.97438 * 9 7 6 37 37 H 1.09003 * 109.47291 * 180.02562 * 12 10 9 38 38 H 1.09000 * 109.46901 * 299.99944 * 12 10 9 39 39 H 1.09000 * 109.47146 * 59.99940 * 12 10 9 40 40 H 1.08994 * 109.47407 * 304.99859 * 13 10 9 41 41 H 1.09001 * 109.46995 * 185.00121 * 13 10 9 42 42 H 1.09001 * 109.47002 * 59.99738 * 16 14 13 43 43 H 1.08993 * 109.46955 * 180.02562 * 16 14 13 44 44 H 1.09000 * 109.47050 * 300.00004 * 16 14 13 45 45 H 0.96997 * 120.00110 * 25.00389 * 17 14 13 46 46 H 0.96997 * 119.99774 * 180.02562 * 21 20 18 47 47 H 1.08012 * 127.41523 * 180.23040 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1499 1.1610 0.0000 4 7 3.5352 1.2183 -0.0005 5 7 4.3537 2.2109 0.0045 6 6 5.6075 1.7895 -0.0015 7 6 6.8140 2.6415 -0.0023 8 8 7.9179 2.1322 -0.0024 9 7 6.6911 3.9837 -0.0029 10 6 7.8877 4.8288 -0.0031 11 1 8.6701 4.3511 0.5866 12 6 8.3770 5.0197 -1.4402 13 6 7.5501 6.1912 0.6058 14 6 7.1804 6.0134 2.0797 15 1 6.3730 5.2863 2.1667 16 6 6.7230 7.3549 2.6562 17 7 8.3496 5.5360 2.8223 18 6 8.1817 4.8305 3.9839 19 1 7.1874 4.6258 4.3524 20 6 9.2896 4.3786 4.6877 21 7 9.1282 3.7001 5.8039 22 14 11.0094 4.7335 4.0507 23 1 11.4889 6.0221 4.6115 24 1 11.9261 3.6413 4.4658 25 1 10.9803 4.8189 2.5684 26 6 5.5838 0.3831 -0.0008 27 6 4.2479 0.0449 -0.0001 28 6 3.5271 -1.2314 0.0003 29 8 4.1316 -2.2884 0.0011 30 7 2.1757 -1.2074 0.0008 31 1 1.6758 -2.0387 0.0014 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5141 0.8898 34 1 -0.3633 0.5134 -0.8901 35 1 1.5824 2.0800 0.0004 36 1 5.8103 4.3901 -0.0032 37 1 9.2676 5.6481 -1.4404 38 1 8.6176 4.0491 -1.8740 39 1 7.5947 5.4974 -2.0300 40 1 6.7081 6.6298 0.0703 41 1 8.4149 6.8497 0.5249 42 1 5.8532 7.7101 2.1037 43 1 6.4602 7.2283 3.7064 44 1 7.5304 8.0819 2.5692 45 1 9.2426 5.7197 2.4912 46 1 9.9023 3.3847 6.2960 47 1 6.4306 -0.2875 -0.0012 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135081991.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:22:50 Heat of formation + Delta-G solvation = 8.785835 kcal Electronic energy + Delta-G solvation = -30545.720184 eV Core-core repulsion = 26343.714043 eV Total energy + Delta-G solvation = -4202.006141 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 3.69 seconds Orbital eigenvalues (eV) -44.37123 -41.33712 -40.62818 -38.68735 -38.37635 -36.17211 -34.57445 -34.07403 -32.93987 -32.18387 -31.97217 -30.94781 -28.24929 -27.59287 -25.58565 -25.34765 -24.83069 -23.51354 -22.32085 -21.65320 -21.29797 -20.32288 -19.78866 -19.66008 -18.58339 -17.90793 -17.55610 -17.30348 -16.67346 -16.30459 -16.22805 -15.96310 -15.74317 -15.49787 -15.23353 -14.95635 -14.62003 -14.54474 -14.41903 -14.29108 -14.06895 -14.01499 -13.43709 -13.26868 -13.24868 -13.00316 -12.79872 -12.63421 -12.50603 -12.50051 -12.38468 -11.99598 -11.86776 -11.77608 -11.68559 -11.47856 -11.44577 -11.32805 -10.95531 -10.67779 -10.08402 -9.26195 -9.04680 -8.00780 -5.30905 -0.37545 -0.01971 0.74792 1.04483 1.34257 1.40176 1.44994 1.45576 1.99390 2.05681 2.24884 2.49265 2.75144 2.95833 3.32214 3.55327 3.66558 3.74364 3.84367 3.94738 4.08125 4.15992 4.30011 4.35493 4.47080 4.52366 4.67188 4.72209 4.77940 4.83273 4.84406 4.90130 4.91723 5.01558 5.09306 5.16883 5.20160 5.22000 5.33977 5.37569 5.45000 5.55372 5.61865 5.71938 5.80244 6.24151 6.29955 6.50292 6.63936 7.12037 7.14540 7.90671 8.07124 9.21672 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011736 B = 0.002863 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2385.233794 B = 9776.992738 C =10234.340840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.154 3.846 3 C -0.053 4.053 4 N -0.173 5.173 5 N -0.231 5.231 6 C -0.027 4.027 7 C 0.601 3.399 8 O -0.568 6.568 9 N -0.688 5.688 10 C 0.139 3.861 11 H 0.054 0.946 12 C -0.152 4.152 13 C -0.120 4.120 14 C 0.165 3.835 15 H 0.037 0.963 16 C -0.156 4.156 17 N -0.748 5.748 18 C -0.213 4.213 19 H 0.050 0.950 20 C -0.070 4.070 21 N -0.989 5.989 22 Si 0.950 3.050 23 H -0.273 1.273 24 H -0.304 1.304 25 H -0.254 1.254 26 C -0.113 4.113 27 C -0.088 4.088 28 C 0.584 3.416 29 O -0.537 6.537 30 N -0.619 5.619 31 H 0.441 0.559 32 H 0.100 0.900 33 H 0.113 0.887 34 H 0.118 0.882 35 H 0.220 0.780 36 H 0.414 0.586 37 H 0.080 0.920 38 H 0.038 0.962 39 H 0.082 0.918 40 H 0.111 0.889 41 H 0.093 0.907 42 H 0.079 0.921 43 H 0.024 0.976 44 H 0.054 0.946 45 H 0.363 0.637 46 H 0.254 0.746 47 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.315 -1.089 -20.391 31.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.050 3.950 3 C -0.169 4.169 4 N 0.042 4.958 5 N -0.071 5.071 6 C -0.179 4.179 7 C 0.385 3.615 8 O -0.446 6.446 9 N -0.338 5.338 10 C 0.034 3.966 11 H 0.072 0.928 12 C -0.210 4.210 13 C -0.158 4.158 14 C 0.058 3.942 15 H 0.055 0.945 16 C -0.215 4.215 17 N -0.392 5.392 18 C -0.345 4.345 19 H 0.068 0.932 20 C -0.261 4.261 21 N -0.640 5.640 22 Si 0.778 3.222 23 H -0.199 1.199 24 H -0.231 1.231 25 H -0.178 1.178 26 C -0.143 4.143 27 C -0.211 4.211 28 C 0.373 3.627 29 O -0.413 6.413 30 N -0.263 5.263 31 H 0.284 0.716 32 H 0.119 0.881 33 H 0.131 0.869 34 H 0.136 0.864 35 H 0.237 0.763 36 H 0.251 0.749 37 H 0.098 0.902 38 H 0.057 0.943 39 H 0.101 0.899 40 H 0.130 0.870 41 H 0.111 0.889 42 H 0.097 0.903 43 H 0.043 0.957 44 H 0.073 0.927 45 H 0.196 0.804 46 H 0.063 0.937 47 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -23.857 -0.994 -20.243 31.304 hybrid contribution 1.639 -1.284 0.623 2.173 sum -22.218 -2.278 -19.620 29.728 Atomic orbital electron populations 1.21190 0.81696 1.06777 1.06889 1.20648 0.97666 0.82002 0.94729 1.21430 0.76106 1.02016 1.17307 1.43382 1.06976 1.02510 1.42961 1.73534 0.99202 1.14912 1.19473 1.21769 0.91310 0.93376 1.11462 1.16924 0.85820 0.82686 0.76078 1.90793 1.27058 1.74663 1.52058 1.45711 1.11066 1.04319 1.72754 1.21087 0.86847 0.91153 0.97463 0.92796 1.22108 1.02592 1.01688 0.94639 1.22153 1.04499 0.94916 0.94272 1.20512 0.88779 0.94195 0.90710 0.94479 1.22268 1.01267 0.97954 1.00045 1.42807 1.04312 1.66145 1.25915 1.18945 0.92967 1.24445 0.98106 0.93177 1.25459 1.01743 1.01176 0.97696 1.69887 1.30108 1.44912 1.19128 0.85463 0.80495 0.77107 0.79101 1.19898 1.23138 1.17832 1.21816 0.95471 0.94474 1.02496 1.21825 0.93074 0.88510 1.17693 1.16958 0.82588 0.86517 0.76627 1.90953 1.67951 1.31988 1.50435 1.43528 1.05291 1.10842 1.66617 0.71625 0.88141 0.86872 0.86376 0.76332 0.74862 0.90152 0.94256 0.89891 0.87044 0.88890 0.90263 0.95662 0.92696 0.80388 0.93725 0.81536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.43 10.06 71.24 0.72 1.15 16 2 C 0.15 1.04 6.76 40.41 0.27 1.31 16 3 C -0.05 -0.64 10.68 82.44 0.88 0.24 16 4 N -0.17 -4.12 3.65 -183.59 -0.67 -4.79 16 5 N -0.23 -6.54 11.80 -48.49 -0.57 -7.11 16 6 C -0.03 -0.93 7.09 42.17 0.30 -0.63 16 7 C 0.60 22.96 7.79 86.74 0.68 23.64 16 8 O -0.57 -26.37 16.57 -3.95 -0.07 -26.43 16 9 N -0.69 -21.51 4.44 -445.53 -1.98 -23.49 16 10 C 0.14 4.28 2.52 44.99 0.11 4.40 16 11 H 0.05 2.23 7.05 -2.39 -0.02 2.21 16 12 C -0.15 -3.71 9.48 71.98 0.68 -3.02 16 13 C -0.12 -3.12 4.29 30.59 0.13 -2.99 16 14 C 0.17 5.95 2.84 44.99 0.13 6.08 16 15 H 0.04 1.47 7.56 -2.39 -0.02 1.45 16 16 C -0.16 -4.92 9.49 71.98 0.68 -4.24 16 17 N -0.75 -35.38 4.30 -322.93 -1.39 -36.77 16 18 C -0.21 -12.69 10.41 84.03 0.87 -11.81 16 19 H 0.05 3.29 8.06 -2.91 -0.02 3.27 16 20 C -0.07 -4.39 5.50 84.86 0.47 -3.92 16 21 N -0.99 -67.23 13.97 21.65 0.30 -66.92 16 22 Si 0.95 48.95 27.74 68.60 1.90 50.85 16 23 H -0.27 -13.36 7.11 99.48 0.71 -12.66 16 24 H -0.30 -16.18 7.11 99.48 0.71 -15.47 16 25 H -0.25 -11.98 6.52 99.48 0.65 -11.33 16 26 C -0.11 -3.84 10.86 22.76 0.25 -3.59 16 27 C -0.09 -2.48 6.97 40.36 0.28 -2.20 16 28 C 0.58 14.07 7.96 86.36 0.69 14.76 16 29 O -0.54 -16.76 17.99 -4.55 -0.08 -16.84 16 30 N -0.62 -7.34 5.37 -302.15 -1.62 -8.96 16 31 H 0.44 2.39 8.64 -92.71 -0.80 1.59 16 32 H 0.10 -0.67 7.89 -2.38 -0.02 -0.69 16 33 H 0.11 -0.65 8.14 -2.39 -0.02 -0.67 16 34 H 0.12 -0.84 8.14 -2.39 -0.02 -0.86 16 35 H 0.22 0.98 8.03 -2.91 -0.02 0.96 16 36 H 0.41 10.64 8.31 -92.71 -0.77 9.87 16 37 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.05 1.63 8.14 -2.39 -0.02 1.62 16 45 H 0.36 16.68 5.66 -92.71 -0.52 16.16 16 46 H 0.25 16.56 8.31 -92.71 -0.77 15.79 16 47 H 0.17 5.79 8.06 -2.90 -0.02 5.77 16 Total: -1.00 -94.89 398.24 1.84 -93.05 By element: Atomic # 1 Polarization: 29.37 SS G_CDS: -1.12 Total: 28.24 kcal Atomic # 6 Polarization: 12.03 SS G_CDS: 7.14 Total: 19.17 kcal Atomic # 7 Polarization: -142.10 SS G_CDS: -5.93 Total: -148.03 kcal Atomic # 8 Polarization: -43.13 SS G_CDS: -0.15 Total: -43.28 kcal Atomic # 14 Polarization: 48.95 SS G_CDS: 1.90 Total: 50.85 kcal Total: -94.89 1.84 -93.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135081991.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.831 kcal (2) G-P(sol) polarization free energy of solvation -94.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.69 seconds