Wall clock time and date at job start Sat Apr 11 2020 08:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35365 * 126.38746 * 2 1 4 4 C 1.41504 * 105.50395 * 179.73388 * 3 2 1 5 5 C 1.47709 * 126.51587 * 179.97438 * 4 3 2 6 6 O 1.21571 * 120.00150 * 359.97438 * 5 4 3 7 7 N 1.34776 * 119.99690 * 179.97438 * 5 4 3 8 8 C 1.47284 * 135.91772 * 359.63636 * 7 5 4 9 9 C 1.52551 * 87.56928 * 153.98320 * 8 7 5 10 10 C 1.47301 * 135.91365 * 179.97438 * 7 5 4 11 11 C 1.53127 * 116.55439 * 268.66288 * 9 8 7 12 12 C 1.54689 * 104.56850 * 228.34180 * 11 9 8 13 13 N 1.48663 * 104.65597 * 23.68706 * 12 11 9 14 14 C 1.46904 * 110.99978 * 201.53172 * 13 12 11 15 15 C 1.50706 * 109.46797 * 290.12733 * 14 13 12 16 16 O 1.21282 * 120.00280 * 0.02562 * 15 14 13 17 17 N 1.34775 * 119.99297 * 179.97438 * 15 14 13 18 18 C 1.37098 * 119.99551 * 179.97438 * 17 15 14 19 19 H 1.07998 * 120.00066 * 0.02562 * 18 17 15 20 20 C 1.38950 * 120.00068 * 179.97438 * 18 17 15 21 21 N 1.31413 * 120.00320 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 119.99802 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47568 * 89.99640 * 22 20 18 24 24 H 1.48505 * 109.47275 * 209.99705 * 22 20 18 25 25 H 1.48503 * 109.47131 * 329.99168 * 22 20 18 26 26 C 1.48840 * 104.43585 * 321.21712 * 13 12 11 27 27 N 1.31805 * 106.96124 * 359.97438 * 4 3 2 28 28 N 1.28463 * 110.07908 * 359.97438 * 27 4 3 29 29 H 0.96998 * 124.88773 * 179.97438 * 28 27 4 30 30 H 1.09006 * 109.47021 * 90.00600 * 1 2 3 31 31 H 1.08997 * 109.47445 * 210.00227 * 1 2 3 32 32 H 1.08994 * 109.47366 * 330.00645 * 1 2 3 33 33 H 1.07997 * 127.24615 * 359.74817 * 3 2 1 34 34 H 1.09003 * 113.51811 * 268.63429 * 8 7 5 35 35 H 1.09000 * 113.52299 * 39.23163 * 8 7 5 36 36 H 1.09005 * 113.51762 * 320.76824 * 10 7 5 37 37 H 1.08996 * 113.51458 * 91.29745 * 10 7 5 38 38 H 1.08999 * 110.42100 * 347.11625 * 11 9 8 39 39 H 1.09001 * 110.41457 * 109.57391 * 11 9 8 40 40 H 1.09000 * 110.40108 * 142.48243 * 12 11 9 41 41 H 1.09002 * 110.39808 * 264.77810 * 12 11 9 42 42 H 1.08994 * 109.46589 * 50.12594 * 14 13 12 43 43 H 1.08994 * 109.47061 * 170.12797 * 14 13 12 44 44 H 0.96998 * 120.00486 * 0.02562 * 17 15 14 45 45 H 0.97003 * 120.00254 * 180.02562 * 21 20 18 46 46 H 1.09005 * 110.47448 * 279.66619 * 26 13 12 47 47 H 1.09000 * 110.47385 * 157.06532 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3100 1.0897 0.0000 4 6 3.6321 0.5853 0.0063 5 6 4.8765 1.3811 0.0083 6 8 4.8214 2.5956 0.0037 7 7 6.0730 0.7609 0.0150 8 6 6.5407 -0.6357 0.0283 9 6 7.8195 -0.1456 -0.6436 10 6 7.4840 1.1838 0.0185 11 6 7.8363 -0.1576 -2.1748 12 6 9.1737 -0.8415 -2.5440 13 7 9.5173 -1.6630 -1.3535 14 6 10.9548 -1.9637 -1.3184 15 6 11.2936 -2.9273 -2.4265 16 8 10.4234 -3.3241 -3.1723 17 7 12.5639 -3.3472 -2.5892 18 6 12.8721 -4.2243 -3.5969 19 1 12.0970 -4.5783 -4.2605 20 6 14.1817 -4.6569 -3.7651 21 7 14.4773 -5.4971 -4.7313 22 14 15.5224 -4.0440 -2.6177 23 1 15.6327 -4.9579 -1.4524 24 1 16.8174 -4.0090 -3.3436 25 1 15.1829 -2.6777 -2.1450 26 6 9.1202 -0.8194 -0.1934 27 7 3.5419 -0.7297 0.0102 28 7 2.3081 -1.0871 0.0074 29 1 1.9966 -2.0057 0.0090 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3634 0.8900 0.5137 33 1 2.0057 2.1259 -0.0038 34 1 6.7005 -1.0314 1.0313 35 1 5.9453 -1.2998 -0.5983 36 1 7.6807 2.0477 -0.6164 37 1 7.9035 1.2909 1.0188 38 1 6.9953 -0.7343 -2.5598 39 1 7.8099 0.8605 -2.5633 40 1 9.0463 -1.4770 -3.4203 41 1 9.9451 -0.0934 -2.7270 42 1 11.5219 -1.0425 -1.4519 43 1 11.2090 -2.4110 -0.3575 44 1 13.2599 -3.0296 -1.9930 45 1 15.3915 -5.7994 -4.8484 46 1 9.8854 -0.0711 0.0136 47 1 8.9440 -1.4390 0.6860 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147072101.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:23:15 Heat of formation + Delta-G solvation = 33.535300 kcal Electronic energy + Delta-G solvation = -29724.055405 eV Core-core repulsion = 25523.122482 eV Total energy + Delta-G solvation = -4200.932924 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.69595 -41.99911 -40.37204 -39.45338 -37.62803 -35.90137 -33.82976 -33.72577 -33.03936 -32.48654 -30.49981 -28.92891 -27.95186 -27.19067 -26.89874 -25.50477 -24.04029 -22.51771 -22.24623 -21.22566 -20.48953 -20.10010 -19.44500 -18.73068 -17.84301 -17.62646 -17.19224 -17.08305 -16.81737 -16.43582 -16.25903 -16.11350 -15.83889 -15.16393 -14.84885 -14.82875 -14.76259 -14.50953 -14.37541 -14.15951 -13.98265 -13.72158 -13.60959 -13.39234 -13.12081 -12.97669 -12.94788 -12.56910 -12.39149 -12.33510 -12.23405 -12.00032 -11.94499 -11.87238 -11.46177 -11.33372 -11.15527 -10.50954 -10.34985 -10.20990 -9.94692 -9.76723 -9.30074 -8.38714 -5.99230 0.46143 1.08670 1.31851 1.37783 1.46306 1.62777 2.01203 2.05554 2.25304 2.28488 2.67848 3.09316 3.17716 3.24305 3.39984 3.58345 3.70454 3.78261 3.92771 3.97240 4.21218 4.26496 4.31090 4.43217 4.47437 4.52462 4.56920 4.57883 4.63035 4.69127 4.74523 4.78704 4.86003 4.88033 4.94241 4.97744 5.02266 5.10968 5.16854 5.23340 5.35208 5.55660 5.90656 5.94718 6.07874 6.10253 6.55537 6.63360 6.75102 6.92295 7.05939 7.44039 8.02485 8.79099 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.024584 B = 0.001863 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.673782 B =15023.989669 C =15695.060628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.033 3.967 3 C -0.208 4.208 4 C -0.035 4.035 5 C 0.624 3.376 6 O -0.576 6.576 7 N -0.637 5.637 8 C 0.130 3.870 9 C -0.091 4.091 10 C 0.122 3.878 11 C -0.088 4.088 12 C 0.040 3.960 13 N -0.510 5.510 14 C 0.044 3.956 15 C 0.451 3.549 16 O -0.608 6.608 17 N -0.594 5.594 18 C -0.326 4.326 19 H 0.053 0.947 20 C -0.017 4.017 21 N -0.937 5.937 22 Si 0.966 3.034 23 H -0.257 1.257 24 H -0.277 1.277 25 H -0.230 1.230 26 C 0.055 3.945 27 N -0.265 5.265 28 N -0.368 5.368 29 H 0.461 0.539 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.162 0.838 34 H 0.109 0.891 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.117 0.883 38 H 0.062 0.938 39 H 0.079 0.921 40 H 0.054 0.946 41 H 0.047 0.953 42 H 0.082 0.918 43 H 0.126 0.874 44 H 0.389 0.611 45 H 0.278 0.722 46 H 0.078 0.922 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.428 14.082 17.922 31.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.093 4.093 3 C -0.236 4.236 4 C -0.195 4.195 5 C 0.413 3.587 6 O -0.455 6.455 7 N -0.370 5.370 8 C 0.008 3.992 9 C -0.093 4.093 10 C 0.000 4.000 11 C -0.126 4.126 12 C -0.088 4.088 13 N -0.234 5.234 14 C -0.087 4.087 15 C 0.239 3.761 16 O -0.492 6.492 17 N -0.236 5.236 18 C -0.455 4.455 19 H 0.071 0.929 20 C -0.215 4.215 21 N -0.578 5.578 22 Si 0.786 3.214 23 H -0.181 1.181 24 H -0.203 1.203 25 H -0.153 1.153 26 C -0.073 4.073 27 N -0.102 5.102 28 N -0.086 5.086 29 H 0.309 0.691 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.115 0.885 33 H 0.180 0.820 34 H 0.127 0.873 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.135 0.865 38 H 0.081 0.919 39 H 0.098 0.902 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.100 0.900 43 H 0.144 0.856 44 H 0.225 0.775 45 H 0.087 0.913 46 H 0.096 0.904 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -22.702 12.996 17.307 31.366 hybrid contribution 0.857 0.706 -0.343 1.162 sum -21.845 13.702 16.964 30.866 Atomic orbital electron populations 1.20543 0.83262 1.05628 1.04746 1.21977 0.97057 0.85952 1.04317 1.21720 0.90185 1.00848 1.10815 1.21776 0.94930 0.90469 1.12311 1.16622 0.81032 0.85426 0.75631 1.90756 1.86771 1.14281 1.53730 1.49538 1.04842 1.11483 1.71117 1.23137 0.91249 0.83052 1.01762 1.21984 0.95491 0.96348 0.95437 1.23127 0.77587 0.96989 1.02313 1.21871 0.96724 1.00571 0.93400 1.23094 0.96594 0.94592 0.94543 1.65116 1.14867 1.40494 1.02966 1.22032 0.90305 0.98166 0.98247 1.20958 0.81955 0.85212 0.87964 1.90536 1.48300 1.61112 1.49223 1.42034 1.08772 1.42685 1.30123 1.18985 0.95225 1.22015 1.09294 0.92859 1.26125 1.00037 0.96386 0.98995 1.69813 1.21302 1.33493 1.33187 0.85353 0.77202 0.80506 0.78367 1.18103 1.20258 1.15323 1.22964 0.94603 0.95626 0.94082 1.73562 1.02961 1.14378 1.19268 1.43503 1.02280 1.10741 1.52033 0.69121 0.88958 0.88755 0.88532 0.81992 0.87278 0.90432 0.90234 0.86548 0.91932 0.90231 0.92715 0.93432 0.89997 0.85646 0.77505 0.91253 0.90439 0.87473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.28 10.44 71.24 0.74 0.47 16 2 C 0.03 0.41 7.23 41.40 0.30 0.71 16 3 C -0.21 -4.04 10.73 22.41 0.24 -3.79 16 4 C -0.04 -0.85 7.10 42.46 0.30 -0.55 16 5 C 0.62 17.24 8.07 86.75 0.70 17.94 16 6 O -0.58 -19.36 17.70 -3.94 -0.07 -19.43 16 7 N -0.64 -14.28 3.68 -861.80 -3.17 -17.45 16 8 C 0.13 2.46 7.05 83.62 0.59 3.05 16 9 C -0.09 -1.70 1.29 -52.45 -0.07 -1.76 16 10 C 0.12 2.09 7.92 83.52 0.66 2.75 16 11 C -0.09 -2.08 6.53 31.21 0.20 -1.88 16 12 C 0.04 1.18 5.82 86.54 0.50 1.69 16 13 N -0.51 -14.46 5.06 -886.63 -4.49 -18.94 16 14 C 0.04 1.28 5.30 85.56 0.45 1.73 16 15 C 0.45 20.13 7.58 87.66 0.66 20.80 16 16 O -0.61 -33.62 14.43 -3.03 -0.04 -33.66 16 17 N -0.59 -27.74 5.09 -306.99 -1.56 -29.31 16 18 C -0.33 -19.11 10.16 84.04 0.85 -18.25 16 19 H 0.05 3.74 7.39 -2.91 -0.02 3.72 16 20 C -0.02 -0.96 5.50 84.93 0.47 -0.49 16 21 N -0.94 -56.75 13.96 21.66 0.30 -56.45 16 22 Si 0.97 38.57 27.74 68.60 1.90 40.47 16 23 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 24 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16 25 H -0.23 -7.64 6.52 99.48 0.65 -6.99 16 26 C 0.05 0.97 5.95 86.01 0.51 1.48 16 27 N -0.26 -5.42 10.77 -48.18 -0.52 -5.93 16 28 N -0.37 -4.77 6.83 -47.93 -0.33 -5.10 16 29 H 0.46 2.47 8.96 -220.00 -1.97 0.50 16 30 H 0.09 0.17 8.14 -2.38 -0.02 0.15 16 31 H 0.09 -0.06 8.14 -2.39 -0.02 -0.08 16 32 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 33 H 0.16 2.95 8.06 -2.91 -0.02 2.93 16 34 H 0.11 1.62 7.99 -2.39 -0.02 1.60 16 35 H 0.08 1.71 7.34 -2.39 -0.02 1.69 16 36 H 0.08 1.44 7.93 -2.38 -0.02 1.42 16 37 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.06 1.66 7.86 -2.39 -0.02 1.64 16 39 H 0.08 1.74 7.83 -2.39 -0.02 1.72 16 40 H 0.05 2.13 6.93 -2.39 -0.02 2.11 16 41 H 0.05 1.31 7.82 -2.39 -0.02 1.29 16 42 H 0.08 1.95 7.88 -2.39 -0.02 1.93 16 43 H 0.13 2.86 8.13 -2.39 -0.02 2.84 16 44 H 0.39 14.90 5.76 -92.71 -0.53 14.37 16 45 H 0.28 15.39 8.31 -92.71 -0.77 14.62 16 46 H 0.08 1.03 7.98 -2.38 -0.02 1.01 16 47 H 0.11 1.53 7.86 -2.39 -0.02 1.51 16 Total: -1.00 -89.31 389.24 -2.39 -91.70 By element: Atomic # 1 Polarization: 31.76 SS G_CDS: -1.54 Total: 30.22 kcal Atomic # 6 Polarization: 16.75 SS G_CDS: 7.13 Total: 23.88 kcal Atomic # 7 Polarization: -123.41 SS G_CDS: -9.76 Total: -133.18 kcal Atomic # 8 Polarization: -52.98 SS G_CDS: -0.11 Total: -53.09 kcal Atomic # 14 Polarization: 38.57 SS G_CDS: 1.90 Total: 40.47 kcal Total: -89.31 -2.39 -91.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147072101.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.237 kcal (2) G-P(sol) polarization free energy of solvation -89.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds