Wall clock time and date at job start Sat Apr 11 2020 08:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.49376 * 2 1 4 4 C 1.53199 * 109.49568 * 239.93719 * 2 1 3 5 5 N 1.46933 * 108.77203 * 294.65083 * 4 2 1 6 6 C 1.34773 * 120.63120 * 126.41882 * 5 4 2 7 7 O 1.21523 * 119.99809 * 354.16835 * 6 5 4 8 8 C 1.48126 * 120.00323 * 174.17270 * 6 5 4 9 9 C 1.40118 * 121.14202 * 320.66650 * 8 6 5 10 10 C 1.38509 * 117.81774 * 179.73896 * 9 8 6 11 11 N 1.31909 * 119.97175 * 0.54699 * 10 9 8 12 12 N 1.28275 * 122.51722 * 359.71604 * 11 10 9 13 13 C 1.31930 * 122.32825 * 359.97438 * 12 11 10 14 14 C 1.46928 * 118.73727 * 306.38705 * 5 4 2 15 15 C 1.53195 * 108.77464 * 53.61648 * 14 5 4 16 16 C 1.53039 * 109.31163 * 305.36026 * 15 14 5 17 17 H 1.09003 * 109.46037 * 301.35022 * 16 15 14 18 18 N 1.46895 * 109.46278 * 181.38530 * 16 15 14 19 19 C 1.46902 * 111.00130 * 84.93044 * 18 16 15 20 20 C 1.50694 * 109.47410 * 180.02562 * 19 18 16 21 21 O 1.21292 * 120.00103 * 0.02562 * 20 19 18 22 22 N 1.34774 * 120.00215 * 180.02562 * 20 19 18 23 23 C 1.37097 * 120.00203 * 180.02562 * 22 20 19 24 24 H 1.07999 * 120.00195 * 359.97438 * 23 22 20 25 25 C 1.38952 * 120.00045 * 179.97438 * 23 22 20 26 26 N 1.31419 * 119.99662 * 359.97438 * 25 23 22 27 27 Si 1.86792 * 120.00162 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.47317 * 59.99627 * 27 25 23 29 29 H 1.48500 * 109.47376 * 179.97438 * 27 25 23 30 30 H 1.48500 * 109.47006 * 300.00012 * 27 25 23 31 31 H 1.09005 * 109.47201 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46875 * 299.99394 * 1 2 3 33 33 H 1.09000 * 109.47291 * 60.00104 * 1 2 3 34 34 H 1.08994 * 109.58666 * 54.43403 * 4 2 1 35 35 H 1.08999 * 109.58469 * 174.72259 * 4 2 1 36 36 H 1.07997 * 121.09090 * 359.97438 * 9 8 6 37 37 H 1.08002 * 120.01220 * 180.26548 * 10 9 8 38 38 H 1.07994 * 120.17252 * 180.02562 * 13 12 11 39 39 H 1.09003 * 109.58619 * 173.39896 * 14 5 4 40 40 H 1.09001 * 109.58808 * 293.68165 * 14 5 4 41 41 H 1.09003 * 109.49982 * 65.30702 * 15 14 5 42 42 H 1.08994 * 109.49874 * 185.37931 * 15 14 5 43 43 H 1.00898 * 111.00298 * 208.88503 * 18 16 15 44 44 H 1.09003 * 109.47096 * 300.00583 * 19 18 16 45 45 H 1.09003 * 109.46632 * 60.00209 * 19 18 16 46 46 H 0.97003 * 119.99888 * 359.97438 * 22 20 19 47 47 H 0.97000 * 119.99288 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7234 -1.2499 5 7 1.6521 -2.1380 -1.1699 6 6 0.9754 -2.7222 -2.1784 7 8 0.5888 -2.0547 -3.1175 8 6 0.7027 -4.1777 -2.1422 9 6 1.6633 -5.0834 -1.6729 10 6 1.3334 -6.4286 -1.6643 11 7 0.1512 -6.8201 -2.0992 12 7 -0.7305 -5.9966 -2.5350 13 6 -0.5192 -4.6951 -2.5799 14 6 2.0154 -2.9038 0.0303 15 6 1.5044 -2.1560 1.2658 16 6 2.0415 -0.7230 1.2481 17 1 3.1313 -0.7439 1.2347 18 7 1.5806 -0.0127 2.4485 19 6 2.4734 -0.2681 3.5867 20 6 1.9694 0.4748 4.7971 21 8 0.9649 1.1501 4.7194 22 7 2.6348 0.3887 5.9660 23 6 2.1759 1.0641 7.0673 24 1 1.2815 1.6655 6.9981 25 6 2.8617 0.9750 8.2726 26 7 3.9498 0.2429 8.3568 27 14 2.2369 1.8958 9.7729 28 1 0.8665 1.4298 10.1045 29 1 3.1392 1.6371 10.9237 30 1 2.2081 3.3520 9.4834 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.6002 -0.2729 -2.1389 35 1 3.1272 -0.6433 -1.2999 36 1 2.6278 -4.7435 -1.3258 37 1 2.0456 -7.1572 -1.3058 38 1 -1.2865 -4.0332 -2.9533 39 1 1.5572 -3.8919 -0.0141 40 1 3.0993 -3.0058 0.0846 41 1 0.4146 -2.1361 1.2542 42 1 1.8495 -2.6632 2.1667 43 1 1.4937 0.9769 2.2721 44 1 2.4944 -1.3370 3.7995 45 1 3.4794 0.0736 3.3431 46 1 3.4379 -0.1517 6.0283 47 1 4.4282 0.1804 9.1983 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271427637.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:21:26 Heat of formation + Delta-G solvation = 2.090622 kcal Electronic energy + Delta-G solvation = -30229.469150 eV Core-core repulsion = 26027.172682 eV Total energy + Delta-G solvation = -4202.296467 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.85506 -40.52042 -38.75791 -37.95965 -35.48012 -34.25019 -33.83872 -33.04043 -32.52874 -31.39051 -31.12951 -27.54094 -27.20295 -25.81361 -25.11643 -24.57706 -23.75470 -22.67706 -21.06591 -19.44908 -18.98172 -18.42926 -17.93212 -17.69777 -17.28937 -16.71373 -16.02727 -16.00677 -15.47146 -15.33911 -15.30940 -15.10692 -14.58939 -14.29279 -14.25542 -14.01725 -13.89788 -13.87680 -13.57806 -13.20203 -12.82939 -12.42966 -12.12104 -11.99288 -11.88267 -11.62547 -11.50219 -11.46679 -11.35793 -11.06456 -10.96265 -10.82423 -10.62075 -10.56311 -10.51093 -10.47875 -10.25657 -10.03739 -9.54648 -9.14907 -8.51853 -8.15526 -8.01131 -6.46476 -3.87386 -0.14702 0.33491 2.09856 2.35608 3.04049 3.16656 3.22752 3.27039 3.57156 3.64239 3.85004 3.90393 3.95590 3.98461 4.18045 4.21390 4.34098 4.45668 4.64195 4.77572 4.85014 4.85387 4.93170 5.02500 5.10200 5.16297 5.22986 5.26026 5.28890 5.39620 5.44626 5.47784 5.56768 5.66050 5.74598 5.84245 5.87343 5.92525 6.04622 6.14347 6.21670 6.35162 6.78760 7.13912 7.50584 7.51653 7.56177 8.01162 8.13435 8.56019 9.13095 9.48977 10.00303 10.71119 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018266 B = 0.002019 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.529551 B =13866.349299 C =14686.220292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.107 4.107 3 H 0.085 0.915 4 C 0.118 3.882 5 N -0.595 5.595 6 C 0.565 3.435 7 O -0.522 6.522 8 C -0.124 4.124 9 C -0.088 4.088 10 C 0.039 3.961 11 N -0.228 5.228 12 N -0.239 5.239 13 C 0.090 3.910 14 C 0.095 3.905 15 C -0.127 4.127 16 C 0.093 3.907 17 H 0.044 0.956 18 N -0.661 5.661 19 C 0.051 3.949 20 C 0.440 3.560 21 O -0.583 6.583 22 N -0.563 5.563 23 C -0.300 4.300 24 H 0.102 0.898 25 C 0.022 3.978 26 N -0.902 5.902 27 Si 0.931 3.069 28 H -0.273 1.273 29 H -0.284 1.284 30 H -0.274 1.274 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.049 0.951 34 H 0.098 0.902 35 H 0.073 0.927 36 H 0.160 0.840 37 H 0.181 0.819 38 H 0.181 0.819 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.351 0.649 44 H 0.084 0.916 45 H 0.043 0.957 46 H 0.392 0.608 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.792 -10.137 -20.537 22.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.127 4.127 3 H 0.103 0.897 4 C -0.004 4.004 5 N -0.328 5.328 6 C 0.351 3.649 7 O -0.398 6.398 8 C -0.138 4.138 9 C -0.118 4.118 10 C -0.125 4.125 11 N -0.071 5.071 12 N -0.080 5.080 13 C -0.074 4.074 14 C -0.028 4.028 15 C -0.166 4.166 16 C -0.018 4.018 17 H 0.062 0.938 18 N -0.294 5.294 19 C -0.082 4.082 20 C 0.225 3.775 21 O -0.467 6.467 22 N -0.200 5.200 23 C -0.430 4.430 24 H 0.120 0.880 25 C -0.179 4.179 26 N -0.543 5.543 27 Si 0.758 3.242 28 H -0.199 1.199 29 H -0.210 1.210 30 H -0.199 1.199 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.116 0.884 35 H 0.091 0.909 36 H 0.178 0.822 37 H 0.198 0.802 38 H 0.198 0.802 39 H 0.106 0.894 40 H 0.095 0.905 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.172 0.828 44 H 0.103 0.897 45 H 0.061 0.939 46 H 0.225 0.775 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.457 -11.081 -21.019 23.765 hybrid contribution 2.233 1.773 1.108 3.059 sum 1.776 -9.309 -19.910 22.051 Atomic orbital electron populations 1.21757 0.93591 1.02162 1.02167 1.21680 0.98063 0.99379 0.93553 0.89704 1.21769 0.99674 0.79308 0.99628 1.47967 1.55228 1.11982 1.17603 1.17952 0.78200 0.85978 0.82802 1.90828 1.50837 1.63892 1.34275 1.21205 0.96739 0.95473 1.00407 1.22816 1.00530 0.94029 0.94382 1.24400 0.96318 0.95203 0.96576 1.72921 0.99750 1.29614 1.04776 1.73166 1.23503 1.01334 1.10038 1.24541 0.95668 0.94349 0.92868 1.22225 1.00679 0.95558 0.84336 1.22001 1.02848 0.95279 0.96479 1.21477 0.96732 0.93972 0.89571 0.93767 1.60082 1.50398 1.16041 1.02908 1.21722 0.93904 1.01015 0.91521 1.19798 0.86673 0.86550 0.84481 1.90529 1.26800 1.44760 1.84621 1.41861 1.25717 1.44027 1.08380 1.19651 1.10530 1.25637 0.87144 0.87981 1.25265 0.95827 0.97553 0.99272 1.69605 1.17320 1.39748 1.27662 0.85914 0.78547 0.79726 0.80028 1.19860 1.20959 1.19901 0.92745 0.90919 0.93191 0.88362 0.90907 0.82236 0.80179 0.80183 0.89424 0.90490 0.90008 0.90148 0.82803 0.89747 0.93929 0.77498 0.91800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 8.56 37.16 0.32 -1.15 16 2 C -0.11 -0.97 2.58 -90.49 -0.23 -1.20 16 3 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16 4 C 0.12 0.94 5.84 -3.70 -0.02 0.92 16 5 N -0.60 -4.67 2.41 -173.76 -0.42 -5.09 16 6 C 0.56 5.33 7.39 -12.20 -0.09 5.24 16 7 O -0.52 -6.60 16.37 5.35 0.09 -6.51 16 8 C -0.12 -0.99 5.17 -104.58 -0.54 -1.53 16 9 C -0.09 -0.48 7.59 -38.78 -0.29 -0.78 16 10 C 0.04 0.24 11.30 -17.42 -0.20 0.04 16 11 N -0.23 -2.22 11.48 30.53 0.35 -1.87 16 12 N -0.24 -2.53 11.49 30.78 0.35 -2.17 16 13 C 0.09 0.81 10.98 -16.95 -0.19 0.62 16 14 C 0.09 0.60 4.95 -3.71 -0.02 0.58 16 15 C -0.13 -1.14 5.25 -26.61 -0.14 -1.28 16 16 C 0.09 0.93 2.15 -67.67 -0.15 0.79 16 17 H 0.04 0.42 7.80 -51.93 -0.40 0.01 16 18 N -0.66 -9.38 5.25 -107.95 -0.57 -9.94 16 19 C 0.05 0.82 5.96 -4.98 -0.03 0.79 16 20 C 0.44 9.91 7.82 -10.99 -0.09 9.82 16 21 O -0.58 -15.32 15.78 5.55 0.09 -15.23 16 22 N -0.56 -13.81 5.29 -10.97 -0.06 -13.87 16 23 C -0.30 -8.20 9.68 -14.93 -0.14 -8.34 16 24 H 0.10 2.93 7.16 -52.49 -0.38 2.56 16 25 C 0.02 0.59 5.50 -17.46 -0.10 0.50 16 26 N -0.90 -24.01 13.05 55.50 0.72 -23.29 16 27 Si 0.93 20.71 29.55 -169.99 -5.02 15.69 16 28 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 29 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 30 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 31 H 0.05 0.60 5.97 -51.93 -0.31 0.29 16 32 H 0.07 0.90 7.59 -51.93 -0.39 0.50 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.10 0.89 7.00 -51.93 -0.36 0.52 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.16 0.44 6.64 -52.49 -0.35 0.09 16 37 H 0.18 0.44 8.06 -52.49 -0.42 0.02 16 38 H 0.18 1.39 8.06 -52.49 -0.42 0.97 16 39 H 0.09 0.47 4.70 -51.93 -0.24 0.23 16 40 H 0.08 0.34 8.13 -51.93 -0.42 -0.08 16 41 H 0.08 0.88 6.34 -51.93 -0.33 0.55 16 42 H 0.08 0.74 7.42 -51.93 -0.39 0.35 16 43 H 0.35 5.29 7.96 -39.29 -0.31 4.97 16 44 H 0.08 1.23 7.41 -51.93 -0.38 0.85 16 45 H 0.04 0.61 8.05 -51.93 -0.42 0.19 16 46 H 0.39 9.14 7.90 -40.82 -0.32 8.82 16 47 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 381.60 15.07 5.75 5.75 Total: -1.00 -33.92 381.60 -6.88 -40.80 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -6.26 Total: 10.74 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: -1.91 Total: 5.00 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: 0.38 Total: -56.23 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: 0.18 Total: -21.74 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.92 -6.88 -40.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271427637.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.888 kcal (2) G-P(sol) polarization free energy of solvation -33.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds