Wall clock time and date at job start Sat Apr 11 2020 08:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.49376 * 2 1 4 4 C 1.53199 * 109.49568 * 239.93719 * 2 1 3 5 5 N 1.46933 * 108.77203 * 294.65083 * 4 2 1 6 6 C 1.34773 * 120.63120 * 126.41882 * 5 4 2 7 7 O 1.21523 * 119.99809 * 354.16835 * 6 5 4 8 8 C 1.48126 * 120.00323 * 174.17270 * 6 5 4 9 9 C 1.40118 * 121.14202 * 320.66650 * 8 6 5 10 10 C 1.38509 * 117.81774 * 179.73896 * 9 8 6 11 11 N 1.31909 * 119.97175 * 0.54699 * 10 9 8 12 12 N 1.28275 * 122.51722 * 359.71604 * 11 10 9 13 13 C 1.31930 * 122.32825 * 359.97438 * 12 11 10 14 14 C 1.46928 * 118.73727 * 306.38705 * 5 4 2 15 15 C 1.53195 * 108.77464 * 53.61648 * 14 5 4 16 16 C 1.53039 * 109.31163 * 305.36026 * 15 14 5 17 17 H 1.09003 * 109.46037 * 301.35022 * 16 15 14 18 18 N 1.46895 * 109.46278 * 181.38530 * 16 15 14 19 19 C 1.46902 * 111.00130 * 84.93044 * 18 16 15 20 20 C 1.50694 * 109.47410 * 180.02562 * 19 18 16 21 21 O 1.21292 * 120.00103 * 0.02562 * 20 19 18 22 22 N 1.34774 * 120.00215 * 180.02562 * 20 19 18 23 23 C 1.37097 * 120.00203 * 180.02562 * 22 20 19 24 24 H 1.07999 * 120.00195 * 359.97438 * 23 22 20 25 25 C 1.38952 * 120.00045 * 179.97438 * 23 22 20 26 26 N 1.31419 * 119.99662 * 359.97438 * 25 23 22 27 27 Si 1.86792 * 120.00162 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.47317 * 59.99627 * 27 25 23 29 29 H 1.48500 * 109.47376 * 179.97438 * 27 25 23 30 30 H 1.48500 * 109.47006 * 300.00012 * 27 25 23 31 31 H 1.09005 * 109.47201 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46875 * 299.99394 * 1 2 3 33 33 H 1.09000 * 109.47291 * 60.00104 * 1 2 3 34 34 H 1.08994 * 109.58666 * 54.43403 * 4 2 1 35 35 H 1.08999 * 109.58469 * 174.72259 * 4 2 1 36 36 H 1.07997 * 121.09090 * 359.97438 * 9 8 6 37 37 H 1.08002 * 120.01220 * 180.26548 * 10 9 8 38 38 H 1.07994 * 120.17252 * 180.02562 * 13 12 11 39 39 H 1.09003 * 109.58619 * 173.39896 * 14 5 4 40 40 H 1.09001 * 109.58808 * 293.68165 * 14 5 4 41 41 H 1.09003 * 109.49982 * 65.30702 * 15 14 5 42 42 H 1.08994 * 109.49874 * 185.37931 * 15 14 5 43 43 H 1.00898 * 111.00298 * 208.88503 * 18 16 15 44 44 H 1.09003 * 109.47096 * 300.00583 * 19 18 16 45 45 H 1.09003 * 109.46632 * 60.00209 * 19 18 16 46 46 H 0.97003 * 119.99888 * 359.97438 * 22 20 19 47 47 H 0.97000 * 119.99288 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7234 -1.2499 5 7 1.6521 -2.1380 -1.1699 6 6 0.9754 -2.7222 -2.1784 7 8 0.5888 -2.0547 -3.1175 8 6 0.7027 -4.1777 -2.1422 9 6 1.6633 -5.0834 -1.6729 10 6 1.3334 -6.4286 -1.6643 11 7 0.1512 -6.8201 -2.0992 12 7 -0.7305 -5.9966 -2.5350 13 6 -0.5192 -4.6951 -2.5799 14 6 2.0154 -2.9038 0.0303 15 6 1.5044 -2.1560 1.2658 16 6 2.0415 -0.7230 1.2481 17 1 3.1313 -0.7439 1.2347 18 7 1.5806 -0.0127 2.4485 19 6 2.4734 -0.2681 3.5867 20 6 1.9694 0.4748 4.7971 21 8 0.9649 1.1501 4.7194 22 7 2.6348 0.3887 5.9660 23 6 2.1759 1.0641 7.0673 24 1 1.2815 1.6655 6.9981 25 6 2.8617 0.9750 8.2726 26 7 3.9498 0.2429 8.3568 27 14 2.2369 1.8958 9.7729 28 1 0.8665 1.4298 10.1045 29 1 3.1392 1.6371 10.9237 30 1 2.2081 3.3520 9.4834 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.6002 -0.2729 -2.1389 35 1 3.1272 -0.6433 -1.2999 36 1 2.6278 -4.7435 -1.3258 37 1 2.0456 -7.1572 -1.3058 38 1 -1.2865 -4.0332 -2.9533 39 1 1.5572 -3.8919 -0.0141 40 1 3.0993 -3.0058 0.0846 41 1 0.4146 -2.1361 1.2542 42 1 1.8495 -2.6632 2.1667 43 1 1.4937 0.9769 2.2721 44 1 2.4944 -1.3370 3.7995 45 1 3.4794 0.0736 3.3431 46 1 3.4379 -0.1517 6.0283 47 1 4.4282 0.1804 9.1983 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271427637.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:21:26 Heat of formation + Delta-G solvation = -23.653896 kcal Electronic energy + Delta-G solvation = -30230.585516 eV Core-core repulsion = 26027.172682 eV Total energy + Delta-G solvation = -4203.412833 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.46520 -41.21331 -40.15716 -39.15555 -36.45948 -35.84766 -34.84039 -33.61751 -33.38759 -33.15006 -32.06720 -28.55330 -28.26272 -26.76937 -25.97091 -25.66973 -24.57656 -23.56308 -21.74377 -21.08095 -19.96358 -19.72705 -19.06482 -18.35572 -17.94500 -17.70117 -17.19275 -16.78133 -16.68096 -16.39226 -16.21437 -15.90680 -15.80851 -15.58170 -15.33998 -15.12780 -14.86407 -14.57258 -14.45497 -14.25809 -13.87348 -13.65921 -13.47448 -13.27915 -12.89842 -12.79246 -12.71847 -12.46094 -12.41627 -12.17106 -12.12685 -12.07915 -11.71297 -11.52088 -11.49346 -11.34027 -11.23129 -11.11509 -10.66884 -10.31533 -10.00306 -9.80236 -9.26287 -8.46228 -5.94383 -0.71372 -0.18953 1.39677 1.41478 1.42051 1.52260 1.73512 2.07770 2.29381 2.45949 2.91103 3.02369 3.08130 3.21597 3.36673 3.49677 3.51151 3.67532 3.72798 3.80936 3.97625 4.10598 4.23874 4.31860 4.36824 4.42489 4.46465 4.48722 4.54560 4.60370 4.65688 4.70209 4.72203 4.77408 4.80495 4.94374 5.05490 5.08938 5.12588 5.30482 5.38286 5.41545 5.50525 5.93120 6.14194 6.17169 6.43775 6.61779 6.84380 7.14062 7.55193 7.58455 8.14284 8.70785 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018266 B = 0.002019 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.529551 B =13866.349299 C =14686.220292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.101 4.101 3 H 0.091 0.909 4 C 0.122 3.878 5 N -0.590 5.590 6 C 0.566 3.434 7 O -0.563 6.563 8 C -0.135 4.135 9 C -0.066 4.066 10 C 0.047 3.953 11 N -0.263 5.263 12 N -0.273 5.273 13 C 0.080 3.920 14 C 0.098 3.902 15 C -0.127 4.127 16 C 0.095 3.905 17 H 0.068 0.932 18 N -0.678 5.678 19 C 0.068 3.932 20 C 0.436 3.564 21 O -0.626 6.626 22 N -0.574 5.574 23 C -0.333 4.333 24 H 0.076 0.924 25 C -0.012 4.012 26 N -0.919 5.919 27 Si 0.990 3.010 28 H -0.274 1.274 29 H -0.270 1.270 30 H -0.272 1.272 31 H 0.046 0.954 32 H 0.049 0.951 33 H 0.048 0.952 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.198 0.802 37 H 0.221 0.779 38 H 0.179 0.821 39 H 0.099 0.901 40 H 0.114 0.886 41 H 0.056 0.944 42 H 0.084 0.916 43 H 0.344 0.656 44 H 0.105 0.895 45 H 0.069 0.931 46 H 0.397 0.603 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.561 -11.340 -20.431 23.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.121 4.121 3 H 0.109 0.891 4 C 0.000 4.000 5 N -0.321 5.321 6 C 0.353 3.647 7 O -0.442 6.442 8 C -0.150 4.150 9 C -0.096 4.096 10 C -0.117 4.117 11 N -0.104 5.104 12 N -0.113 5.113 13 C -0.085 4.085 14 C -0.024 4.024 15 C -0.166 4.166 16 C -0.015 4.015 17 H 0.086 0.914 18 N -0.311 5.311 19 C -0.064 4.064 20 C 0.224 3.776 21 O -0.512 6.512 22 N -0.211 5.211 23 C -0.463 4.463 24 H 0.094 0.906 25 C -0.212 4.212 26 N -0.560 5.560 27 Si 0.814 3.186 28 H -0.199 1.199 29 H -0.195 1.195 30 H -0.198 1.198 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.103 0.897 35 H 0.119 0.881 36 H 0.215 0.785 37 H 0.238 0.762 38 H 0.196 0.804 39 H 0.117 0.883 40 H 0.132 0.868 41 H 0.075 0.925 42 H 0.102 0.898 43 H 0.163 0.837 44 H 0.123 0.877 45 H 0.087 0.913 46 H 0.231 0.769 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.329 -12.325 -20.912 24.385 hybrid contribution 1.369 2.152 1.063 2.763 sum 3.698 -10.173 -19.849 22.609 Atomic orbital electron populations 1.21672 0.95302 1.01220 1.00917 1.21635 0.96473 1.00041 0.93927 0.89064 1.21764 1.01070 0.79094 0.98118 1.48028 1.54380 1.12071 1.17612 1.18118 0.77644 0.86366 0.82557 1.90810 1.52499 1.64888 1.36005 1.21134 0.97192 0.95094 1.01568 1.23228 1.01011 0.93227 0.92120 1.25044 0.95502 0.96354 0.94825 1.72811 1.01274 1.30216 1.06095 1.73104 1.24756 1.01870 1.11564 1.24576 0.96524 0.94118 0.93325 1.22391 1.02803 0.95179 0.82021 1.21978 1.01427 0.94983 0.98164 1.21596 0.98010 0.94000 0.87858 0.91427 1.60095 1.50865 1.15944 1.04162 1.21570 0.94871 1.00969 0.89015 1.21005 0.85523 0.85505 0.85575 1.90501 1.28688 1.46491 1.85543 1.41929 1.26220 1.44354 1.08606 1.19591 1.10653 1.27046 0.89023 0.90554 1.25986 0.95862 0.98040 1.01286 1.69656 1.17705 1.40093 1.28519 0.85037 0.78109 0.78443 0.77061 1.19911 1.19462 1.19771 0.93537 0.93211 0.93304 0.89677 0.88119 0.78463 0.76216 0.80387 0.88256 0.86831 0.92483 0.89757 0.83688 0.87655 0.91328 0.76898 0.91307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 8.56 71.98 0.62 -2.24 16 2 C -0.10 -1.65 2.58 -10.71 -0.03 -1.68 16 3 H 0.09 1.40 8.10 -2.39 -0.02 1.38 16 4 C 0.12 1.62 5.84 86.36 0.50 2.12 16 5 N -0.59 -7.65 2.41 -821.96 -1.98 -9.63 16 6 C 0.57 9.92 7.39 86.87 0.64 10.56 16 7 O -0.56 -14.23 16.37 -3.79 -0.06 -14.29 16 8 C -0.14 -1.97 5.17 -19.83 -0.10 -2.07 16 9 C -0.07 -0.49 7.59 22.79 0.17 -0.32 16 10 C 0.05 0.42 11.30 84.75 0.96 1.38 16 11 N -0.26 -4.83 11.48 -57.33 -0.66 -5.49 16 12 N -0.27 -5.84 11.49 -56.53 -0.65 -6.49 16 13 C 0.08 1.46 10.98 85.04 0.93 2.40 16 14 C 0.10 0.82 4.95 86.36 0.43 1.24 16 15 C -0.13 -1.92 5.25 30.67 0.16 -1.76 16 16 C 0.09 1.63 2.15 44.94 0.10 1.73 16 17 H 0.07 0.93 7.80 -2.39 -0.02 0.91 16 18 N -0.68 -18.29 5.25 -495.44 -2.60 -20.89 16 19 C 0.07 2.03 5.96 85.55 0.51 2.54 16 20 C 0.44 19.65 7.82 87.66 0.69 20.34 16 21 O -0.63 -33.65 15.78 -3.07 -0.05 -33.70 16 22 N -0.57 -28.24 5.29 -306.99 -1.62 -29.87 16 23 C -0.33 -18.53 9.68 84.04 0.81 -17.71 16 24 H 0.08 4.55 7.16 -2.91 -0.02 4.53 16 25 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 26 N -0.92 -48.22 13.05 21.66 0.28 -47.94 16 27 Si 0.99 42.18 29.55 68.60 2.03 44.20 16 28 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 29 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 30 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 31 H 0.05 1.05 5.97 -2.38 -0.01 1.04 16 32 H 0.05 1.28 7.59 -2.39 -0.02 1.26 16 33 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.08 1.43 7.00 -2.39 -0.02 1.41 16 35 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.20 -0.09 6.64 -2.91 -0.02 -0.11 16 37 H 0.22 0.03 8.06 -2.91 -0.02 0.01 16 38 H 0.18 3.05 8.06 -2.91 -0.02 3.03 16 39 H 0.10 0.64 4.70 -2.39 -0.01 0.63 16 40 H 0.11 0.26 8.13 -2.39 -0.02 0.24 16 41 H 0.06 1.16 6.34 -2.39 -0.02 1.15 16 42 H 0.08 1.24 7.42 -2.39 -0.02 1.23 16 43 H 0.34 10.18 7.96 -89.70 -0.71 9.46 16 44 H 0.11 2.75 7.41 -2.39 -0.02 2.73 16 45 H 0.07 1.73 8.05 -2.39 -0.02 1.71 16 46 H 0.40 18.34 7.90 -92.71 -0.73 17.61 16 47 H 0.28 13.68 8.31 -92.71 -0.77 12.91 16 Total: -1.00 -77.70 381.60 1.13 -76.57 By element: Atomic # 1 Polarization: 31.57 SS G_CDS: -0.41 Total: 31.16 kcal Atomic # 6 Polarization: 9.52 SS G_CDS: 6.86 Total: 16.38 kcal Atomic # 7 Polarization: -113.08 SS G_CDS: -7.23 Total: -120.31 kcal Atomic # 8 Polarization: -47.88 SS G_CDS: -0.11 Total: -47.99 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.20 kcal Total: -77.70 1.13 -76.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271427637.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.911 kcal (2) G-P(sol) polarization free energy of solvation -77.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds