Wall clock time and date at job start Sat Apr 11 2020 08:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 F 1.39896 * 109.47564 * 2 1 4 4 F 1.39907 * 109.47235 * 239.99800 * 2 1 3 5 5 C 1.50706 * 109.47122 * 120.00376 * 2 1 3 6 6 O 1.21287 * 119.99774 * 339.36308 * 5 2 1 7 7 N 1.34774 * 120.00263 * 159.37381 * 5 2 1 8 8 C 1.46497 * 119.99918 * 185.02066 * 7 5 2 9 9 C 1.53003 * 109.46962 * 184.95793 * 8 7 5 10 10 H 1.09005 * 108.89227 * 61.08269 * 9 8 7 11 11 C 1.54063 * 108.98021 * 302.31305 * 9 8 7 12 12 C 1.54293 * 112.29011 * 198.26946 * 11 9 8 13 13 C 1.50459 * 113.03281 * 318.30491 * 12 11 9 14 14 C 1.54503 * 108.85254 * 92.15355 * 13 12 11 15 15 C 1.45869 * 111.59122 * 282.80336 * 14 13 12 16 16 N 1.44273 * 108.97736 * 179.84009 * 9 8 7 17 17 C 1.46895 * 111.00049 * 339.95404 * 16 9 8 18 18 C 1.50698 * 109.47677 * 297.77307 * 17 16 9 19 19 O 1.21300 * 119.99404 * 4.62556 * 18 17 16 20 20 N 1.34767 * 120.00660 * 184.62093 * 18 17 16 21 21 C 1.37098 * 120.00330 * 174.97798 * 20 18 17 22 22 H 1.07992 * 119.99760 * 5.00253 * 21 20 18 23 23 C 1.38956 * 119.99850 * 185.00187 * 21 20 18 24 24 N 1.31406 * 119.99568 * 184.96134 * 23 21 20 25 25 Si 1.86797 * 120.00122 * 4.96415 * 23 21 20 26 26 H 1.48507 * 109.46993 * 94.90478 * 25 23 21 27 27 H 1.48498 * 109.47119 * 214.90426 * 25 23 21 28 28 H 1.48500 * 109.47268 * 334.90848 * 25 23 21 29 29 H 1.08999 * 109.47126 * 300.00370 * 1 2 3 30 30 H 1.09001 * 109.47065 * 60.00034 * 1 2 3 31 31 H 1.09002 * 109.47337 * 179.97438 * 1 2 3 32 32 H 0.97001 * 119.99803 * 5.01097 * 7 5 2 33 33 H 1.08996 * 109.47670 * 64.95677 * 8 7 5 34 34 H 1.09000 * 109.46822 * 304.95284 * 8 7 5 35 35 H 1.09004 * 108.91423 * 77.54846 * 11 9 8 36 36 H 1.08996 * 108.92002 * 318.99794 * 11 9 8 37 37 H 1.08998 * 108.76695 * 197.38619 * 12 11 9 38 38 H 1.08998 * 108.67407 * 79.15860 * 12 11 9 39 39 H 1.09002 * 109.57702 * 332.33857 * 13 12 11 40 40 H 1.08996 * 109.67605 * 212.02308 * 13 12 11 41 41 H 1.09005 * 109.05530 * 162.26435 * 14 13 12 42 42 H 1.09001 * 109.00427 * 43.31312 * 14 13 12 43 43 H 1.08996 * 108.79522 * 300.43938 * 15 14 13 44 44 H 1.09004 * 108.70224 * 182.15298 * 15 14 13 45 45 H 1.08999 * 109.47134 * 177.77262 * 17 16 9 46 46 H 1.09000 * 109.47225 * 57.77548 * 17 16 9 47 47 H 0.97001 * 119.99849 * 354.69881 * 20 18 17 48 48 H 0.97002 * 119.99733 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3189 0.0000 4 9 1.9963 -0.6596 -1.1423 5 6 2.0323 -0.7105 1.2305 6 8 1.3077 -0.8397 2.1944 7 7 3.2868 -1.2022 1.2598 8 6 3.7389 -1.9878 2.4107 9 6 5.2245 -2.3174 2.2513 10 1 5.7907 -1.3867 2.2154 11 6 5.4293 -3.0800 0.9284 12 6 6.7740 -3.8358 0.8907 13 6 7.9144 -3.0371 1.4609 14 6 8.0530 -3.3674 2.9639 15 6 7.0346 -2.6898 3.7585 16 7 5.6592 -3.0873 3.3913 17 6 4.7409 -2.9141 4.5247 18 6 4.7340 -1.4683 4.9494 19 8 5.3604 -0.6466 4.3139 20 7 4.0320 -1.0881 6.0351 21 6 4.1077 0.2058 6.4820 22 1 4.6647 0.9398 5.9188 23 6 3.4677 0.5728 7.6595 24 7 3.4578 1.8313 8.0372 25 14 2.6215 -0.7230 8.7056 26 1 3.5501 -1.1848 9.7686 27 1 1.4063 -0.1399 9.3289 28 1 2.2356 -1.8746 7.8510 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.8903 -1.0361 0.5187 33 1 3.1655 -2.9130 2.4671 34 1 3.5906 -1.4121 3.3243 35 1 5.4003 -2.3690 0.1026 36 1 4.6175 -3.7966 0.8041 37 1 7.0054 -4.0883 -0.1441 38 1 6.6718 -4.7585 1.4619 39 1 7.7125 -1.9730 1.3380 40 1 8.8383 -3.2955 0.9436 41 1 9.0390 -3.0547 3.3076 42 1 7.9535 -4.4442 3.1012 43 1 7.1384 -1.6139 3.6187 44 1 7.1988 -2.9241 4.8104 45 1 5.0700 -3.5358 5.3573 46 1 3.7352 -3.2098 4.2259 47 1 3.4699 -1.7289 6.4981 48 1 3.0107 2.0876 8.8590 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276276310.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:21:48 Heat of formation + Delta-G solvation = -149.351676 kcal Electronic energy + Delta-G solvation = -33236.888193 eV Core-core repulsion = 28577.335508 eV Total energy + Delta-G solvation = -4659.552684 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.32229 -47.31421 -40.63314 -39.35037 -37.73867 -35.35759 -34.46496 -33.60936 -32.26365 -31.75416 -31.64606 -28.56838 -27.61253 -25.47876 -24.75982 -23.84386 -22.42671 -20.96324 -20.51987 -19.63929 -19.23967 -18.76305 -17.97416 -17.90157 -16.94173 -16.28471 -16.15423 -15.71205 -15.38286 -15.20734 -14.93179 -14.76987 -14.52317 -14.12479 -13.99857 -13.66680 -13.63353 -13.53692 -13.44913 -13.13744 -12.78578 -12.75748 -12.66075 -12.53214 -12.48147 -12.22537 -12.13488 -12.03681 -11.51693 -11.38617 -11.10030 -10.72627 -10.65272 -10.57801 -10.47293 -10.26236 -10.16554 -10.05862 -9.98851 -9.60047 -9.28365 -9.07168 -8.21751 -7.73233 -6.36932 -3.87614 2.15707 2.58999 2.99083 3.05303 3.13688 3.57923 3.59710 3.83333 4.06022 4.07739 4.37820 4.41009 4.55506 4.74796 4.84911 5.01271 5.14788 5.18046 5.21746 5.26732 5.36591 5.38472 5.44189 5.61978 5.62911 5.68783 5.76634 5.79601 5.84679 5.90805 5.98265 5.99030 6.13174 6.18668 6.26745 6.33268 6.35199 6.40714 6.46665 6.59942 7.13101 7.23122 7.31204 7.50922 7.86014 8.08113 8.50972 8.88196 9.36208 9.71924 10.75716 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.007297 B = 0.005002 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3836.189240 B = 5596.453203 C = 8607.735685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.281 3.719 3 F -0.181 7.181 4 F -0.191 7.191 5 C 0.482 3.518 6 O -0.496 6.496 7 N -0.700 5.700 8 C 0.100 3.900 9 C 0.079 3.921 10 H 0.078 0.922 11 C -0.108 4.108 12 C -0.105 4.105 13 C -0.118 4.118 14 C -0.111 4.111 15 C 0.046 3.954 16 N -0.492 5.492 17 C 0.025 3.975 18 C 0.413 3.587 19 O -0.578 6.578 20 N -0.581 5.581 21 C -0.306 4.306 22 H 0.118 0.882 23 C 0.044 3.956 24 N -0.876 5.876 25 Si 0.883 3.117 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.270 1.270 29 H 0.102 0.898 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.403 0.597 33 H 0.069 0.931 34 H 0.100 0.900 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.049 0.951 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.069 0.931 44 H 0.062 0.938 45 H 0.093 0.907 46 H 0.095 0.905 47 H 0.373 0.627 48 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.279 -11.660 -15.536 19.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.241 3.759 3 F -0.162 7.162 4 F -0.172 7.172 5 C 0.262 3.738 6 O -0.370 6.370 7 N -0.352 5.352 8 C -0.023 4.023 9 C -0.031 4.031 10 H 0.096 0.904 11 C -0.146 4.146 12 C -0.143 4.143 13 C -0.155 4.155 14 C -0.149 4.149 15 C -0.081 4.081 16 N -0.215 5.215 17 C -0.107 4.107 18 C 0.199 3.801 19 O -0.464 6.464 20 N -0.220 5.220 21 C -0.435 4.435 22 H 0.136 0.864 23 C -0.160 4.160 24 N -0.515 5.515 25 Si 0.710 3.290 26 H -0.196 1.196 27 H -0.201 1.201 28 H -0.196 1.196 29 H 0.121 0.879 30 H 0.107 0.893 31 H 0.112 0.888 32 H 0.239 0.761 33 H 0.087 0.913 34 H 0.118 0.882 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.081 0.919 45 H 0.111 0.889 46 H 0.113 0.887 47 H 0.207 0.793 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.156 -11.571 -15.213 19.114 hybrid contribution -0.431 0.234 0.747 0.894 sum -0.275 -11.337 -14.466 18.381 Atomic orbital electron populations 1.22612 0.88874 1.06240 1.06120 1.21439 0.95889 0.76282 0.82305 1.93104 1.90482 1.36093 1.96549 1.93048 1.90554 1.80751 1.52886 1.20664 0.83440 0.80905 0.88802 1.90820 1.55982 1.56027 1.34165 1.45901 1.12792 1.53334 1.23185 1.22433 0.94928 0.95283 0.89634 1.21585 0.93635 0.96456 0.91440 0.90446 1.22068 0.97943 0.98975 0.95652 1.21151 0.93812 0.99525 0.99794 1.21355 0.97840 1.00590 0.95761 1.20614 0.98078 1.01101 0.95097 1.21087 0.87529 1.00645 0.98868 1.62177 1.02235 1.53385 1.03661 1.22436 0.98700 0.94854 0.94724 1.20809 0.84647 0.90861 0.83806 1.90544 1.47229 1.53574 1.55011 1.42439 1.41038 1.11874 1.26614 1.19412 1.31988 0.85321 1.06760 0.86424 1.25080 0.97377 0.96282 0.97243 1.69635 1.42691 1.15359 1.23796 0.86604 0.79983 0.81258 0.81154 1.19639 1.20126 1.19558 0.87924 0.89289 0.88847 0.76127 0.91318 0.88220 0.92689 0.92002 0.93215 0.91463 0.91998 0.92462 0.92017 0.91836 0.91291 0.91943 0.88911 0.88742 0.79290 0.91534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.82 8.86 37.16 0.33 -1.49 16 2 C 0.28 3.57 2.44 -27.88 -0.07 3.50 16 3 F -0.18 -2.59 17.05 2.25 0.04 -2.55 16 4 F -0.19 -2.22 16.71 2.25 0.04 -2.18 16 5 C 0.48 7.54 7.24 -10.98 -0.08 7.46 16 6 O -0.50 -9.39 16.02 5.55 0.09 -9.31 16 7 N -0.70 -10.19 5.23 -60.29 -0.32 -10.51 16 8 C 0.10 1.58 3.49 -4.04 -0.01 1.57 16 9 C 0.08 1.13 1.14 -68.56 -0.08 1.06 16 10 H 0.08 1.33 5.59 -51.93 -0.29 1.04 16 11 C -0.11 -1.22 5.01 -25.50 -0.13 -1.35 16 12 C -0.11 -1.10 5.42 -27.32 -0.15 -1.25 16 13 C -0.12 -1.29 5.60 -27.21 -0.15 -1.44 16 14 C -0.11 -1.31 5.53 -29.32 -0.16 -1.47 16 15 C 0.05 0.68 4.05 -6.70 -0.03 0.65 16 16 N -0.49 -7.16 4.45 -232.87 -1.04 -8.19 16 17 C 0.02 0.39 5.24 -4.98 -0.03 0.37 16 18 C 0.41 8.78 5.15 -10.99 -0.06 8.72 16 19 O -0.58 -13.95 11.40 5.54 0.06 -13.88 16 20 N -0.58 -13.59 5.06 -10.97 -0.06 -13.64 16 21 C -0.31 -8.56 10.16 -14.93 -0.15 -8.71 16 22 H 0.12 3.77 7.40 -52.49 -0.39 3.39 16 23 C 0.04 1.21 5.50 -17.47 -0.10 1.11 16 24 N -0.88 -25.58 13.96 55.50 0.77 -24.80 16 25 Si 0.88 19.57 28.02 -169.99 -4.76 14.81 16 26 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 27 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 28 H -0.27 -5.42 6.13 56.52 0.35 -5.08 16 29 H 0.10 1.11 7.89 -51.93 -0.41 0.71 16 30 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.40 4.98 7.03 -40.82 -0.29 4.69 16 33 H 0.07 1.02 7.30 -51.93 -0.38 0.64 16 34 H 0.10 2.00 4.31 -51.93 -0.22 1.78 16 35 H 0.05 0.56 7.22 -51.93 -0.37 0.19 16 36 H 0.06 0.68 7.97 -51.93 -0.41 0.27 16 37 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.73 7.38 -51.93 -0.38 0.35 16 39 H 0.06 0.75 7.15 -51.93 -0.37 0.38 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.71 7.58 -51.93 -0.39 0.32 16 43 H 0.07 1.24 5.68 -51.93 -0.30 0.94 16 44 H 0.06 0.95 7.75 -51.93 -0.40 0.54 16 45 H 0.09 1.31 8.05 -51.93 -0.42 0.89 16 46 H 0.09 1.39 6.07 -51.93 -0.31 1.07 16 47 H 0.37 7.86 5.64 -40.82 -0.23 7.63 16 48 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 372.08 15.07 5.61 5.61 Total: -1.00 -31.98 372.08 -7.30 -39.28 By element: Atomic # 1 Polarization: 23.51 SS G_CDS: -6.88 Total: 16.63 kcal Atomic # 6 Polarization: 9.59 SS G_CDS: -0.86 Total: 8.73 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: -0.63 Total: -57.14 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: 0.15 Total: -23.19 kcal Atomic # 9 Polarization: -4.80 SS G_CDS: 0.08 Total: -4.73 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -4.76 Total: 14.81 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.98 -7.30 -39.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276276310.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.075 kcal (2) G-P(sol) polarization free energy of solvation -31.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds