Wall clock time and date at job start Sat Apr 11 2020 08:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 F 1.39896 * 109.47564 * 2 1 4 4 F 1.39907 * 109.47235 * 239.99800 * 2 1 3 5 5 C 1.50706 * 109.47122 * 120.00376 * 2 1 3 6 6 O 1.21287 * 119.99774 * 339.36308 * 5 2 1 7 7 N 1.34774 * 120.00263 * 159.37381 * 5 2 1 8 8 C 1.46497 * 119.99918 * 185.02066 * 7 5 2 9 9 C 1.53003 * 109.46962 * 184.95793 * 8 7 5 10 10 H 1.09005 * 108.89227 * 61.08269 * 9 8 7 11 11 C 1.54063 * 108.98021 * 302.31305 * 9 8 7 12 12 C 1.54293 * 112.29011 * 198.26946 * 11 9 8 13 13 C 1.50459 * 113.03281 * 318.30491 * 12 11 9 14 14 C 1.54503 * 108.85254 * 92.15355 * 13 12 11 15 15 C 1.45869 * 111.59122 * 282.80336 * 14 13 12 16 16 N 1.44273 * 108.97736 * 179.84009 * 9 8 7 17 17 C 1.46895 * 111.00049 * 339.95404 * 16 9 8 18 18 C 1.50698 * 109.47677 * 297.77307 * 17 16 9 19 19 O 1.21300 * 119.99404 * 4.62556 * 18 17 16 20 20 N 1.34767 * 120.00660 * 184.62093 * 18 17 16 21 21 C 1.37098 * 120.00330 * 174.97798 * 20 18 17 22 22 H 1.07992 * 119.99760 * 5.00253 * 21 20 18 23 23 C 1.38956 * 119.99850 * 185.00187 * 21 20 18 24 24 N 1.31406 * 119.99568 * 184.96134 * 23 21 20 25 25 Si 1.86797 * 120.00122 * 4.96415 * 23 21 20 26 26 H 1.48507 * 109.46993 * 94.90478 * 25 23 21 27 27 H 1.48498 * 109.47119 * 214.90426 * 25 23 21 28 28 H 1.48500 * 109.47268 * 334.90848 * 25 23 21 29 29 H 1.08999 * 109.47126 * 300.00370 * 1 2 3 30 30 H 1.09001 * 109.47065 * 60.00034 * 1 2 3 31 31 H 1.09002 * 109.47337 * 179.97438 * 1 2 3 32 32 H 0.97001 * 119.99803 * 5.01097 * 7 5 2 33 33 H 1.08996 * 109.47670 * 64.95677 * 8 7 5 34 34 H 1.09000 * 109.46822 * 304.95284 * 8 7 5 35 35 H 1.09004 * 108.91423 * 77.54846 * 11 9 8 36 36 H 1.08996 * 108.92002 * 318.99794 * 11 9 8 37 37 H 1.08998 * 108.76695 * 197.38619 * 12 11 9 38 38 H 1.08998 * 108.67407 * 79.15860 * 12 11 9 39 39 H 1.09002 * 109.57702 * 332.33857 * 13 12 11 40 40 H 1.08996 * 109.67605 * 212.02308 * 13 12 11 41 41 H 1.09005 * 109.05530 * 162.26435 * 14 13 12 42 42 H 1.09001 * 109.00427 * 43.31312 * 14 13 12 43 43 H 1.08996 * 108.79522 * 300.43938 * 15 14 13 44 44 H 1.09004 * 108.70224 * 182.15298 * 15 14 13 45 45 H 1.08999 * 109.47134 * 177.77262 * 17 16 9 46 46 H 1.09000 * 109.47225 * 57.77548 * 17 16 9 47 47 H 0.97001 * 119.99849 * 354.69881 * 20 18 17 48 48 H 0.97002 * 119.99733 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3189 0.0000 4 9 1.9963 -0.6596 -1.1423 5 6 2.0323 -0.7105 1.2305 6 8 1.3077 -0.8397 2.1944 7 7 3.2868 -1.2022 1.2598 8 6 3.7389 -1.9878 2.4107 9 6 5.2245 -2.3174 2.2513 10 1 5.7907 -1.3867 2.2154 11 6 5.4293 -3.0800 0.9284 12 6 6.7740 -3.8358 0.8907 13 6 7.9144 -3.0371 1.4609 14 6 8.0530 -3.3674 2.9639 15 6 7.0346 -2.6898 3.7585 16 7 5.6592 -3.0873 3.3913 17 6 4.7409 -2.9141 4.5247 18 6 4.7340 -1.4683 4.9494 19 8 5.3604 -0.6466 4.3139 20 7 4.0320 -1.0881 6.0351 21 6 4.1077 0.2058 6.4820 22 1 4.6647 0.9398 5.9188 23 6 3.4677 0.5728 7.6595 24 7 3.4578 1.8313 8.0372 25 14 2.6215 -0.7230 8.7056 26 1 3.5501 -1.1848 9.7686 27 1 1.4063 -0.1399 9.3289 28 1 2.2356 -1.8746 7.8510 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.8903 -1.0361 0.5187 33 1 3.1655 -2.9130 2.4671 34 1 3.5906 -1.4121 3.3243 35 1 5.4003 -2.3690 0.1026 36 1 4.6175 -3.7966 0.8041 37 1 7.0054 -4.0883 -0.1441 38 1 6.6718 -4.7585 1.4619 39 1 7.7125 -1.9730 1.3380 40 1 8.8383 -3.2955 0.9436 41 1 9.0390 -3.0547 3.3076 42 1 7.9535 -4.4442 3.1012 43 1 7.1384 -1.6139 3.6187 44 1 7.1988 -2.9241 4.8104 45 1 5.0700 -3.5358 5.3573 46 1 3.7352 -3.2098 4.2259 47 1 3.4699 -1.7289 6.4981 48 1 3.0107 2.0876 8.8590 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276276310.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:21:47 Heat of formation + Delta-G solvation = -174.323106 kcal Electronic energy + Delta-G solvation = -33237.971035 eV Core-core repulsion = 28577.335508 eV Total energy + Delta-G solvation = -4660.635527 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.37615 -48.36848 -42.00645 -40.69844 -39.26229 -36.57574 -36.15528 -35.06576 -33.80166 -33.37490 -32.59005 -29.90647 -28.81726 -27.00273 -25.86140 -25.31826 -23.54163 -22.13904 -21.83127 -21.28254 -20.61282 -20.09510 -19.51860 -18.97906 -18.10945 -17.87734 -17.29152 -17.01045 -16.81828 -16.62692 -16.42154 -15.99327 -15.72327 -15.48025 -15.20275 -15.06444 -14.88222 -14.68871 -14.65761 -14.55240 -14.21385 -14.05048 -13.76003 -13.61619 -13.57617 -13.53157 -13.34912 -13.13269 -13.02676 -12.64120 -12.45158 -12.41299 -12.03637 -11.86091 -11.69584 -11.56524 -11.42913 -11.32204 -11.23735 -11.04092 -10.94095 -10.39824 -10.24409 -9.20280 -8.46211 -6.05588 0.89741 1.24572 1.30599 1.39288 1.43121 1.86739 2.18004 2.51194 2.78416 2.87583 2.93380 3.10547 3.33463 3.40923 3.54849 3.83194 3.93809 4.09771 4.18965 4.22657 4.28169 4.34820 4.47556 4.52657 4.53122 4.54272 4.61836 4.66203 4.77734 4.87655 4.89339 4.97856 4.99896 5.09036 5.22513 5.31416 5.41182 5.41612 5.49081 5.50102 5.60781 5.86266 5.91271 6.01266 6.06475 6.53108 6.65027 6.84023 7.34646 7.88782 8.71466 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.007297 B = 0.005002 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3836.189240 B = 5596.453203 C = 8607.735685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.287 3.713 3 F -0.192 7.192 4 F -0.181 7.181 5 C 0.474 3.526 6 O -0.534 6.534 7 N -0.694 5.694 8 C 0.104 3.896 9 C 0.085 3.915 10 H 0.043 0.957 11 C -0.102 4.102 12 C -0.102 4.102 13 C -0.117 4.117 14 C -0.108 4.108 15 C 0.051 3.949 16 N -0.475 5.475 17 C 0.031 3.969 18 C 0.422 3.578 19 O -0.610 6.610 20 N -0.591 5.591 21 C -0.323 4.323 22 H 0.053 0.947 23 C -0.014 4.014 24 N -0.933 5.933 25 Si 0.965 3.035 26 H -0.258 1.258 27 H -0.275 1.275 28 H -0.233 1.233 29 H 0.090 0.910 30 H 0.116 0.884 31 H 0.107 0.893 32 H 0.414 0.586 33 H 0.087 0.913 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.041 0.959 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.080 0.920 43 H 0.028 0.972 44 H 0.057 0.943 45 H 0.123 0.877 46 H 0.117 0.883 47 H 0.388 0.612 48 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.349 -15.709 -16.900 23.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.247 3.753 3 F -0.173 7.173 4 F -0.162 7.162 5 C 0.255 3.745 6 O -0.411 6.411 7 N -0.346 5.346 8 C -0.020 4.020 9 C -0.025 4.025 10 H 0.061 0.939 11 C -0.141 4.141 12 C -0.140 4.140 13 C -0.154 4.154 14 C -0.146 4.146 15 C -0.076 4.076 16 N -0.197 5.197 17 C -0.101 4.101 18 C 0.209 3.791 19 O -0.496 6.496 20 N -0.232 5.232 21 C -0.453 4.453 22 H 0.071 0.929 23 C -0.213 4.213 24 N -0.573 5.573 25 Si 0.785 3.215 26 H -0.183 1.183 27 H -0.200 1.200 28 H -0.157 1.157 29 H 0.109 0.891 30 H 0.135 0.865 31 H 0.125 0.875 32 H 0.251 0.749 33 H 0.105 0.895 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.060 0.940 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.098 0.902 43 H 0.046 0.954 44 H 0.076 0.924 45 H 0.141 0.859 46 H 0.134 0.866 47 H 0.224 0.776 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.432 -15.639 -16.637 22.838 hybrid contribution -0.098 1.585 1.017 1.886 sum -0.530 -14.054 -15.620 21.019 Atomic orbital electron populations 1.22677 0.86434 1.07460 1.06922 1.21420 0.97304 0.75311 0.81224 1.93088 1.90813 1.36895 1.96545 1.93069 1.90635 1.80471 1.51996 1.21276 0.83268 0.80536 0.89430 1.90794 1.56978 1.57531 1.35753 1.45900 1.12846 1.52803 1.23075 1.22284 0.96178 0.95194 0.88323 1.21570 0.92054 0.95781 0.93099 0.93884 1.22040 0.99271 0.99233 0.93512 1.21146 0.92628 0.99032 1.01156 1.21358 0.99265 0.99517 0.95296 1.20586 0.97117 1.01577 0.95323 1.21075 0.88542 0.98556 0.99421 1.62380 1.01878 1.52343 1.03054 1.22594 1.00581 0.90632 0.96251 1.22034 0.82050 0.93074 0.81905 1.90553 1.47872 1.55555 1.55596 1.42299 1.42682 1.10399 1.27839 1.18943 1.32611 0.86525 1.07219 0.92891 1.26105 0.97865 0.99059 0.98263 1.69812 1.44426 1.18292 1.24799 0.85355 0.78419 0.78619 0.79096 1.18258 1.20043 1.15687 0.89060 0.86518 0.87470 0.74874 0.89515 0.92732 0.91592 0.90728 0.91062 0.91153 0.94018 0.90427 0.91361 0.90159 0.95368 0.92433 0.85888 0.86555 0.77568 0.91191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.30 8.86 71.98 0.64 -2.66 16 2 C 0.29 7.05 2.44 29.85 0.07 7.12 16 3 F -0.19 -5.46 17.05 44.97 0.77 -4.70 16 4 F -0.18 -3.84 16.71 44.97 0.75 -3.09 16 5 C 0.47 14.80 7.24 87.66 0.63 15.44 16 6 O -0.53 -20.52 16.02 -3.05 -0.05 -20.57 16 7 N -0.69 -20.07 5.23 -463.06 -2.42 -22.49 16 8 C 0.10 3.24 3.49 86.38 0.30 3.55 16 9 C 0.08 2.39 1.14 45.77 0.05 2.44 16 10 H 0.04 1.54 5.59 -2.38 -0.01 1.52 16 11 C -0.10 -2.06 5.01 31.39 0.16 -1.90 16 12 C -0.10 -1.79 5.42 30.21 0.16 -1.62 16 13 C -0.12 -2.31 5.60 30.28 0.17 -2.14 16 14 C -0.11 -2.36 5.53 28.92 0.16 -2.20 16 15 C 0.05 1.51 4.05 83.94 0.34 1.85 16 16 N -0.47 -13.13 4.45 -890.67 -3.96 -17.09 16 17 C 0.03 0.94 5.24 85.56 0.45 1.39 16 18 C 0.42 18.39 5.15 87.66 0.45 18.85 16 19 O -0.61 -31.32 11.40 -3.09 -0.04 -31.36 16 20 N -0.59 -28.19 5.06 -306.99 -1.55 -29.74 16 21 C -0.32 -19.20 10.16 84.04 0.85 -18.34 16 22 H 0.05 3.74 7.40 -2.91 -0.02 3.72 16 23 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 24 N -0.93 -57.39 13.96 21.66 0.30 -57.09 16 25 Si 0.96 40.28 28.02 68.60 1.92 42.20 16 26 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 27 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 28 H -0.23 -8.24 6.13 99.48 0.61 -7.63 16 29 H 0.09 1.94 7.89 -2.39 -0.02 1.92 16 30 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.41 9.99 7.03 -92.71 -0.65 9.34 16 33 H 0.09 2.40 7.30 -2.39 -0.02 2.38 16 34 H 0.05 2.25 4.31 -2.39 -0.01 2.24 16 35 H 0.07 1.19 7.22 -2.39 -0.02 1.17 16 36 H 0.07 1.36 7.97 -2.39 -0.02 1.34 16 37 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.07 1.23 7.38 -2.39 -0.02 1.22 16 39 H 0.04 0.99 7.15 -2.39 -0.02 0.98 16 40 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 42 H 0.08 1.53 7.58 -2.39 -0.02 1.51 16 43 H 0.03 1.06 5.68 -2.39 -0.01 1.05 16 44 H 0.06 1.71 7.75 -2.38 -0.02 1.69 16 45 H 0.12 3.07 8.05 -2.39 -0.02 3.05 16 46 H 0.12 3.12 6.07 -2.39 -0.01 3.10 16 47 H 0.39 15.85 5.64 -92.71 -0.52 15.33 16 48 H 0.28 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -77.49 372.08 0.38 -77.11 By element: Atomic # 1 Polarization: 45.62 SS G_CDS: -0.25 Total: 45.37 kcal Atomic # 6 Polarization: 16.53 SS G_CDS: 4.91 Total: 21.43 kcal Atomic # 7 Polarization: -118.78 SS G_CDS: -7.63 Total: -126.41 kcal Atomic # 8 Polarization: -51.84 SS G_CDS: -0.08 Total: -51.92 kcal Atomic # 9 Polarization: -9.30 SS G_CDS: 1.52 Total: -7.78 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 1.92 Total: 42.20 kcal Total: -77.49 0.38 -77.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276276310.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.210 kcal (2) G-P(sol) polarization free energy of solvation -77.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds