Wall clock time and date at job start Sat Apr 11 2020 08:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.46256 * 2 1 4 4 C 1.53041 * 109.45648 * 119.90384 * 2 1 3 5 5 C 1.53116 * 109.27952 * 179.12724 * 4 2 1 6 6 H 1.09007 * 109.52054 * 62.38010 * 5 4 2 7 7 N 1.46500 * 109.52816 * 182.50258 * 5 4 2 8 8 C 1.34775 * 120.00460 * 204.87318 * 7 5 4 9 9 O 1.21280 * 119.99715 * 359.72687 * 8 7 5 10 10 C 1.50699 * 120.00053 * 180.02562 * 8 7 5 11 11 C 1.52997 * 109.46999 * 180.02562 * 10 8 7 12 12 C 1.52995 * 109.47072 * 179.97438 * 11 10 8 13 13 F 1.39896 * 109.47418 * 174.99510 * 12 11 10 14 14 F 1.39898 * 109.47853 * 295.00168 * 12 11 10 15 15 C 1.53123 * 109.21179 * 302.44689 * 5 4 2 16 16 C 1.53032 * 109.27963 * 57.61981 * 15 5 4 17 17 N 1.46849 * 109.46408 * 240.01864 * 2 1 3 18 18 C 1.46894 * 110.99795 * 54.15543 * 17 2 1 19 19 C 1.50703 * 109.46850 * 199.71069 * 18 17 2 20 20 O 1.21286 * 119.99936 * 359.97438 * 19 18 17 21 21 N 1.34779 * 119.99952 * 180.02562 * 19 18 17 22 22 C 1.37094 * 120.00026 * 180.02562 * 21 19 18 23 23 H 1.08001 * 120.00283 * 359.97438 * 22 21 19 24 24 C 1.38951 * 120.00194 * 179.97438 * 22 21 19 25 25 N 1.31410 * 119.99740 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00127 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.46950 * 90.00175 * 26 24 22 28 28 H 1.48497 * 109.47410 * 210.00045 * 26 24 22 29 29 H 1.48501 * 109.47207 * 330.00075 * 26 24 22 30 30 H 1.09002 * 109.47164 * 171.87798 * 1 2 3 31 31 H 1.08996 * 109.47174 * 291.87378 * 1 2 3 32 32 H 1.09000 * 109.47003 * 51.87545 * 1 2 3 33 33 H 1.09002 * 109.45446 * 59.22046 * 4 2 1 34 34 H 1.09006 * 109.55888 * 299.10234 * 4 2 1 35 35 H 0.97001 * 119.99099 * 24.87968 * 7 5 4 36 36 H 1.08999 * 109.46905 * 300.00250 * 10 8 7 37 37 H 1.09000 * 109.47093 * 60.00030 * 10 8 7 38 38 H 1.08999 * 109.47355 * 299.99802 * 11 10 8 39 39 H 1.09000 * 109.47315 * 59.99993 * 11 10 8 40 40 H 1.09007 * 109.47147 * 55.00072 * 12 11 10 41 41 H 1.08999 * 109.49981 * 177.56238 * 15 5 4 42 42 H 1.09000 * 109.50225 * 297.63710 * 15 5 4 43 43 H 1.08997 * 109.46680 * 60.83991 * 16 15 5 44 44 H 1.09000 * 109.45775 * 180.81779 * 16 15 5 45 45 H 1.08999 * 109.47362 * 319.70878 * 18 17 2 46 46 H 1.08997 * 109.47627 * 79.71040 * 18 17 2 47 47 H 0.96996 * 120.00150 * 359.97438 * 21 19 18 48 48 H 0.97000 * 119.99897 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0397 -0.7194 1.2509 5 6 3.5707 -0.7362 1.2359 6 1 3.9465 0.2866 1.2680 7 7 4.0638 -1.4756 2.4005 8 6 5.2948 -1.2228 2.8876 9 8 5.9962 -0.3866 2.3588 10 6 5.8021 -1.9839 4.0853 11 6 7.2144 -1.5079 4.4311 12 6 7.7293 -2.2801 5.6474 13 9 9.0605 -1.9278 5.8943 14 9 6.9486 -1.9651 6.7647 15 6 4.0546 -1.4190 -0.0464 16 6 3.4865 -0.6779 -1.2588 17 7 2.0193 -0.6919 -1.1993 18 6 1.4375 -0.1107 -2.4165 19 6 1.5531 -1.0979 -3.5493 20 8 2.0697 -2.1790 -3.3612 21 7 1.0833 -0.7791 -4.7716 22 6 1.1879 -1.6773 -5.8020 23 1 1.6472 -2.6403 -5.6343 24 6 0.7031 -1.3488 -7.0620 25 7 0.1447 -0.1769 -7.2662 26 14 0.8463 -2.5725 -8.4661 27 1 -0.3635 -3.4332 -8.4980 28 1 0.9659 -1.8390 -9.7518 29 1 2.0503 -3.4182 -8.2649 30 1 -0.3633 -1.0174 -0.1452 31 1 -0.3633 0.3829 0.9536 32 1 -0.3633 0.6345 -0.8084 33 1 1.6647 -1.7429 1.2593 34 1 1.6902 -0.1959 2.1409 35 1 3.5043 -2.1473 2.8209 36 1 5.1416 -1.8077 4.9342 37 1 5.8232 -3.0494 3.8564 38 1 7.8752 -1.6838 3.5823 39 1 7.1929 -0.4425 4.6602 40 1 7.6673 -3.3506 5.4511 41 1 5.1437 -1.3951 -0.0827 42 1 3.7128 -2.4540 -0.0588 43 1 3.8405 0.3529 -1.2530 44 1 3.8174 -1.1704 -2.1732 45 1 0.3868 0.1209 -2.2422 46 1 1.9729 0.8029 -2.6747 47 1 0.6704 0.0856 -4.9221 48 1 -0.1934 0.0526 -8.1459 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281671863.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:22:14 Heat of formation + Delta-G solvation = -186.022743 kcal Electronic energy + Delta-G solvation = -30459.608267 eV Core-core repulsion = 25798.465406 eV Total energy + Delta-G solvation = -4661.142861 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.36068 -47.37282 -40.38812 -39.18113 -37.66732 -35.30298 -34.21473 -33.86403 -32.30119 -31.79849 -31.11831 -28.08996 -27.04567 -26.63350 -24.48280 -23.17149 -22.68594 -21.46137 -20.59781 -19.73013 -19.10332 -18.10037 -17.91089 -17.82595 -17.28105 -16.49278 -16.07120 -16.00341 -15.91482 -15.36540 -15.19193 -14.56100 -14.42285 -14.31667 -14.01609 -13.95805 -13.79273 -13.69955 -13.51125 -13.30403 -13.20460 -12.87188 -12.57357 -12.33274 -12.12155 -11.97383 -11.80879 -11.73490 -11.68469 -11.48993 -11.34951 -11.10188 -11.02949 -10.87695 -10.69771 -10.46699 -10.38313 -10.19769 -10.01918 -9.46790 -9.21999 -8.45392 -7.93751 -7.83228 -6.39162 -3.79676 2.34305 2.75612 3.18961 3.27315 3.33035 3.44234 3.79687 3.90635 3.96260 3.97194 4.11884 4.24398 4.45489 4.59988 4.62285 4.79372 4.84293 4.86995 4.97165 5.08576 5.19987 5.27402 5.32855 5.35355 5.41093 5.46946 5.51615 5.53601 5.64686 5.75414 5.76184 5.86940 5.97186 6.03269 6.10542 6.17226 6.23918 6.33194 6.40009 6.43075 7.21049 7.30288 7.41679 7.57393 7.94297 8.09522 8.65547 9.21411 9.58420 10.10833 10.78745 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.021679 B = 0.001736 C = 0.001648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.284218 B =16126.609814 C =16981.472154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.084 3.916 3 H 0.039 0.961 4 C -0.115 4.115 5 C 0.143 3.857 6 H 0.084 0.916 7 N -0.723 5.723 8 C 0.514 3.486 9 O -0.538 6.538 10 C -0.143 4.143 11 C -0.157 4.157 12 C 0.262 3.738 13 F -0.205 7.205 14 F -0.207 7.207 15 C -0.120 4.120 16 C 0.063 3.937 17 N -0.509 5.509 18 C 0.039 3.961 19 C 0.446 3.554 20 O -0.576 6.576 21 N -0.568 5.568 22 C -0.297 4.297 23 H 0.102 0.898 24 C 0.021 3.979 25 N -0.903 5.903 26 Si 0.929 3.071 27 H -0.279 1.279 28 H -0.284 1.284 29 H -0.270 1.270 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.401 0.599 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.095 0.905 40 H 0.112 0.888 41 H 0.067 0.933 42 H 0.076 0.924 43 H 0.026 0.974 44 H 0.094 0.906 45 H 0.094 0.906 46 H 0.048 0.952 47 H 0.391 0.609 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.770 -0.848 24.968 25.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.025 4.025 3 H 0.057 0.943 4 C -0.153 4.153 5 C 0.039 3.961 6 H 0.102 0.898 7 N -0.374 5.374 8 C 0.300 3.700 9 O -0.415 6.415 10 C -0.183 4.183 11 C -0.195 4.195 12 C 0.208 3.792 13 F -0.187 7.187 14 F -0.189 7.189 15 C -0.159 4.159 16 C -0.065 4.065 17 N -0.234 5.234 18 C -0.092 4.092 19 C 0.231 3.769 20 O -0.459 6.459 21 N -0.205 5.205 22 C -0.426 4.426 23 H 0.120 0.880 24 C -0.180 4.180 25 N -0.545 5.545 26 Si 0.756 3.244 27 H -0.205 1.205 28 H -0.210 1.210 29 H -0.195 1.195 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.235 0.765 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.122 0.878 39 H 0.114 0.886 40 H 0.129 0.871 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.044 0.956 44 H 0.112 0.888 45 H 0.112 0.888 46 H 0.066 0.934 47 H 0.224 0.776 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.419 -1.361 24.599 25.729 hybrid contribution -0.273 0.559 -0.675 0.918 sum 7.146 -0.802 23.923 24.981 Atomic orbital electron populations 1.21943 0.94035 1.03226 1.01496 1.21521 0.95664 0.95130 0.90155 0.94340 1.21882 0.93492 1.02517 0.97436 1.21124 0.93956 0.96360 0.84674 0.89799 1.46097 1.16879 1.42065 1.32338 1.20419 0.81593 0.83192 0.84764 1.90742 1.56063 1.34148 1.60542 1.21581 0.97109 1.01641 0.97936 1.22410 0.97134 1.02650 0.97313 1.21956 0.73194 1.00556 0.83500 1.92999 1.36433 1.94159 1.95072 1.92989 1.74818 1.94930 1.56127 1.21912 1.00229 1.00810 0.92964 1.22048 0.86797 0.98096 0.99551 1.61529 1.07187 1.54300 1.00409 1.21975 1.00954 0.95835 0.90457 1.19782 0.84640 0.88911 0.83553 1.90503 1.48054 1.24385 1.82996 1.41871 1.53172 1.17707 1.07748 1.19678 1.36598 0.98711 0.87652 0.87998 1.25242 0.96939 0.97078 0.98768 1.69612 1.40084 1.20682 1.24094 0.85874 0.78825 0.79827 0.79845 1.20462 1.20992 1.19487 0.91200 0.92303 0.92085 0.90226 0.91163 0.76526 0.87951 0.88053 0.87763 0.88597 0.87085 0.91417 0.90580 0.95606 0.88808 0.88798 0.93373 0.77586 0.91959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 8.58 37.16 0.32 -1.31 16 2 C 0.08 1.02 2.44 -67.72 -0.17 0.85 16 3 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 4 C -0.11 -1.13 4.84 -26.65 -0.13 -1.26 16 5 C 0.14 1.54 2.52 -67.81 -0.17 1.37 16 6 H 0.08 1.05 7.58 -51.92 -0.39 0.65 16 7 N -0.72 -5.96 5.08 -53.68 -0.27 -6.23 16 8 C 0.51 4.76 7.80 -10.99 -0.09 4.67 16 9 O -0.54 -7.32 15.65 5.56 0.09 -7.23 16 10 C -0.14 -0.74 5.62 -27.89 -0.16 -0.90 16 11 C -0.16 -0.98 4.73 -26.74 -0.13 -1.11 16 12 C 0.26 1.47 5.29 37.15 0.20 1.67 16 13 F -0.21 -1.71 17.34 2.25 0.04 -1.67 16 14 F -0.21 -1.54 17.02 2.25 0.04 -1.50 16 15 C -0.12 -1.60 5.67 -26.65 -0.15 -1.75 16 16 C 0.06 1.00 5.11 -3.83 -0.02 0.98 16 17 N -0.51 -8.07 4.06 -228.13 -0.93 -9.00 16 18 C 0.04 0.68 5.31 -4.98 -0.03 0.66 16 19 C 0.45 10.40 7.49 -10.98 -0.08 10.32 16 20 O -0.58 -15.36 14.73 5.55 0.08 -15.28 16 21 N -0.57 -14.31 5.29 -10.96 -0.06 -14.37 16 22 C -0.30 -8.25 9.68 -14.93 -0.14 -8.39 16 23 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 24 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 25 N -0.90 -24.55 13.05 55.50 0.72 -23.83 16 26 Si 0.93 21.08 29.55 -169.99 -5.02 16.06 16 27 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 28 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 29 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 32 H 0.06 0.68 6.41 -51.93 -0.33 0.34 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.40 2.15 8.60 -40.82 -0.35 1.80 16 36 H 0.10 0.39 7.93 -51.93 -0.41 -0.02 16 37 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 38 H 0.10 0.70 8.10 -51.93 -0.42 0.28 16 39 H 0.10 0.75 8.10 -51.93 -0.42 0.33 16 40 H 0.11 0.27 8.14 -51.92 -0.42 -0.16 16 41 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.09 1.79 6.69 -51.93 -0.35 1.44 16 45 H 0.09 1.48 5.43 -51.93 -0.28 1.20 16 46 H 0.05 0.79 8.00 -51.93 -0.42 0.38 16 47 H 0.39 9.45 7.90 -40.82 -0.32 9.12 16 48 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 395.27 15.07 5.96 5.96 Total: -1.00 -34.05 395.27 -7.63 -41.68 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -7.44 Total: 9.15 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: -0.84 Total: 6.27 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: -0.53 Total: -53.43 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: 0.17 Total: -22.51 kcal Atomic # 9 Polarization: -3.25 SS G_CDS: 0.08 Total: -3.17 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.05 -7.63 -41.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281671863.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.346 kcal (2) G-P(sol) polarization free energy of solvation -34.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds