Wall clock time and date at job start Sat Apr 11 2020 08:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00264 * 2 1 4 4 H 1.48499 * 109.47358 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47080 * 300.00215 * 3 2 1 6 6 H 1.48502 * 109.47049 * 59.99900 * 3 2 1 7 7 C 1.37875 * 120.00005 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99998 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00332 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47384 * 179.97438 * 9 7 2 11 11 C 1.46494 * 120.00040 * 270.00002 * 10 9 7 12 12 C 1.53003 * 109.47313 * 270.00107 * 11 10 9 13 13 N 1.46895 * 109.47325 * 180.02562 * 12 11 10 14 14 C 1.47016 * 111.00106 * 293.63536 * 13 12 11 15 15 C 1.53095 * 109.25765 * 177.60552 * 14 13 12 16 16 O 1.43021 * 109.25963 * 56.84793 * 15 14 13 17 17 C 1.43012 * 113.73591 * 301.32947 * 16 15 14 18 18 C 1.47017 * 111.00153 * 169.99785 * 13 12 11 19 19 C 1.34779 * 119.99916 * 90.00419 * 10 9 7 20 20 O 1.21273 * 120.00280 * 180.02562 * 19 10 9 21 21 C 1.50706 * 119.99657 * 359.97438 * 19 10 9 22 22 C 1.53000 * 109.46678 * 180.02562 * 21 19 10 23 23 C 1.50707 * 109.46899 * 180.02562 * 22 21 19 24 24 C 1.38227 * 119.62059 * 125.01804 * 23 22 21 25 25 C 1.38627 * 119.15702 * 179.74122 * 24 23 22 26 26 C 1.38669 * 118.42389 * 0.47826 * 25 24 23 27 27 C 1.38186 * 119.16143 * 359.49762 * 26 25 24 28 28 N 1.31856 * 119.61137 * 304.99234 * 23 22 21 29 29 H 0.96992 * 119.99745 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.46543 * 60.00036 * 9 7 2 31 31 H 1.09003 * 109.46724 * 300.00625 * 9 7 2 32 32 H 1.08999 * 109.47429 * 29.99890 * 11 10 9 33 33 H 1.09001 * 109.47287 * 150.00345 * 11 10 9 34 34 H 1.09008 * 109.46956 * 300.00215 * 12 11 10 35 35 H 1.09000 * 109.47187 * 59.99602 * 12 11 10 36 36 H 1.08994 * 109.50185 * 297.54171 * 14 13 12 37 37 H 1.09003 * 109.50393 * 57.67486 * 14 13 12 38 38 H 1.08998 * 109.51199 * 296.91373 * 15 14 13 39 39 H 1.08998 * 109.54414 * 176.80395 * 15 14 13 40 40 H 1.08996 * 109.51003 * 298.72957 * 17 16 15 41 41 H 1.09006 * 109.53842 * 178.62512 * 17 16 15 42 42 H 1.08996 * 109.50542 * 302.33063 * 18 13 12 43 43 H 1.08994 * 109.50163 * 62.41441 * 18 13 12 44 44 H 1.08995 * 109.47052 * 60.00215 * 21 19 10 45 45 H 1.09000 * 109.46920 * 299.99657 * 21 19 10 46 46 H 1.08995 * 109.47755 * 59.99971 * 22 21 19 47 47 H 1.08999 * 109.47059 * 299.99460 * 22 21 19 48 48 H 1.07998 * 120.41916 * 359.95342 * 24 23 22 49 49 H 1.08008 * 120.78688 * 180.22921 * 25 24 23 50 50 H 1.08002 * 120.42244 * 179.78279 * 26 25 24 51 51 H 1.07996 * 119.61757 * 180.25243 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0018 11 6 2.6781 -4.1688 -1.2711 12 6 1.7471 -5.2999 -1.7126 13 7 2.2237 -5.8580 -2.9850 14 6 2.1052 -4.8728 -4.0698 15 6 2.6668 -5.4735 -5.3611 16 8 1.9740 -6.6895 -5.6560 17 6 2.0691 -7.6718 -4.6209 18 6 1.5014 -7.0933 -3.3220 19 6 2.6419 -4.1254 1.1649 20 8 3.4303 -5.0469 1.1639 21 6 2.1535 -3.5529 2.4706 22 6 2.8008 -4.3088 3.6327 23 6 2.3120 -3.7367 4.9385 24 6 1.7312 -4.5710 5.8751 25 6 1.2898 -4.0355 7.0751 26 6 1.4407 -2.6732 7.2852 27 6 2.0315 -1.9017 6.3026 28 7 2.4439 -2.4462 5.1744 29 1 -0.4849 0.8400 0.0004 30 1 0.6241 -2.5567 -0.8903 31 1 0.6247 -2.5570 0.8897 32 1 2.6853 -3.3869 -2.0304 33 1 3.6877 -4.5590 -1.1417 34 1 1.7399 -6.0819 -0.9532 35 1 0.7375 -4.9098 -1.8419 36 1 1.0561 -4.6151 -4.2143 37 1 2.6685 -3.9763 -3.8104 38 1 3.7291 -5.6816 -5.2339 39 1 2.5297 -4.7685 -6.1810 40 1 3.1140 -7.9438 -4.4721 41 1 1.4995 -8.5568 -4.9047 42 1 1.6239 -7.8177 -2.5169 43 1 0.4425 -6.8712 -3.4539 44 1 1.0699 -3.6546 2.5293 45 1 2.4232 -2.4984 2.5284 46 1 3.8844 -4.2069 3.5739 47 1 2.5315 -5.3634 3.5751 48 1 1.6257 -5.6272 5.6758 49 1 0.8355 -4.6638 7.8270 50 1 1.1051 -2.2214 8.2070 51 1 2.1564 -0.8407 6.4601 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299585870.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:25:12 Heat of formation + Delta-G solvation = -45.310346 kcal Electronic energy + Delta-G solvation = -30590.640278 eV Core-core repulsion = 26489.828694 eV Total energy + Delta-G solvation = -4100.811584 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.14152 -39.62616 -38.95466 -36.16109 -34.77657 -33.83723 -32.58529 -32.25524 -31.24127 -30.41561 -29.29507 -27.23208 -26.21617 -24.57198 -24.01806 -23.40321 -22.94300 -22.06851 -20.99883 -20.28538 -18.18744 -16.98037 -16.66929 -16.50898 -16.24640 -16.13675 -16.04689 -15.45033 -15.24455 -15.08734 -14.96046 -14.81836 -14.38534 -14.27190 -14.05967 -13.53258 -13.37681 -13.19697 -12.88633 -12.69628 -12.37423 -12.28149 -12.10175 -11.92548 -11.70440 -11.47734 -11.42087 -11.34849 -11.26408 -10.91232 -10.78972 -10.67730 -10.62329 -10.36832 -10.09366 -9.81194 -9.79277 -9.64831 -9.25698 -9.07516 -8.81368 -8.55130 -8.33959 -7.72934 -6.17873 -4.24743 1.18101 1.35118 3.23413 3.31871 3.35821 3.42698 3.59599 3.82119 3.89653 4.20334 4.35367 4.45134 4.78008 4.85761 4.88796 5.00407 5.02882 5.10411 5.12522 5.16038 5.18232 5.26212 5.37973 5.48509 5.53413 5.56018 5.58975 5.62595 5.65813 5.72599 5.76320 5.83978 5.86393 5.96399 5.97163 6.06216 6.17021 6.21291 6.30959 6.44465 6.46981 6.65182 6.73690 6.81723 6.99490 7.05775 7.10758 7.16736 7.53762 7.77328 8.05817 8.15530 8.33296 8.80360 9.02928 9.43669 10.89084 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008587 B = 0.003007 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3259.853218 B = 9308.934131 C =12002.295451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.066 3.934 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.282 1.282 7 C -0.535 4.535 8 H 0.062 0.938 9 C 0.238 3.762 10 N -0.596 5.596 11 C 0.126 3.874 12 C 0.045 3.955 13 N -0.533 5.533 14 C 0.012 3.988 15 C 0.065 3.935 16 O -0.389 6.389 17 C 0.065 3.935 18 C 0.018 3.982 19 C 0.518 3.482 20 O -0.576 6.576 21 C -0.125 4.125 22 C -0.053 4.053 23 C 0.140 3.860 24 C -0.174 4.174 25 C -0.077 4.077 26 C -0.187 4.187 27 C 0.105 3.895 28 N -0.473 5.473 29 H 0.264 0.736 30 H 0.032 0.968 31 H 0.039 0.961 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.037 0.963 36 H 0.044 0.956 37 H 0.093 0.907 38 H 0.059 0.941 39 H 0.097 0.903 40 H 0.059 0.941 41 H 0.095 0.905 42 H 0.084 0.916 43 H 0.041 0.959 44 H 0.084 0.916 45 H 0.115 0.885 46 H 0.088 0.912 47 H 0.080 0.920 48 H 0.133 0.867 49 H 0.130 0.870 50 H 0.130 0.870 51 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.935 -10.699 3.661 11.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.137 4.137 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.208 1.208 7 C -0.573 4.573 8 H 0.080 0.920 9 C 0.118 3.882 10 N -0.326 5.326 11 C 0.002 3.998 12 C -0.084 4.084 13 N -0.259 5.259 14 C -0.116 4.116 15 C -0.012 4.012 16 O -0.308 6.308 17 C -0.012 4.012 18 C -0.110 4.110 19 C 0.307 3.693 20 O -0.457 6.457 21 C -0.165 4.165 22 C -0.092 4.092 23 C 0.002 3.998 24 C -0.194 4.194 25 C -0.103 4.103 26 C -0.207 4.207 27 C -0.053 4.053 28 N -0.182 5.182 29 H 0.074 0.926 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.055 0.945 36 H 0.062 0.938 37 H 0.111 0.889 38 H 0.077 0.923 39 H 0.115 0.885 40 H 0.077 0.923 41 H 0.113 0.887 42 H 0.103 0.897 43 H 0.059 0.941 44 H 0.103 0.897 45 H 0.133 0.867 46 H 0.106 0.894 47 H 0.099 0.901 48 H 0.151 0.849 49 H 0.148 0.852 50 H 0.148 0.852 51 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 1.945 -10.648 2.890 11.204 hybrid contribution -1.012 0.949 0.951 1.682 sum 0.933 -9.700 3.841 10.474 Atomic orbital electron populations 1.69929 1.06041 1.27160 1.49944 1.24922 0.94808 0.99287 0.94651 0.86470 0.80260 0.83285 0.77672 1.19571 1.20971 1.20780 1.21510 0.93664 0.90370 1.51791 0.91967 1.19437 0.87486 0.82760 0.98486 1.48185 1.45561 1.34632 1.04228 1.21146 0.97848 0.94599 0.86202 1.22509 0.97367 0.98212 0.90278 1.62145 1.56090 1.04907 1.02737 1.22879 1.00805 0.96219 0.91706 1.22682 0.96058 0.86087 0.96400 1.87955 1.74997 1.25559 1.42287 1.22639 1.00993 0.91031 0.86520 1.22758 0.96408 0.93290 0.98550 1.20532 0.80651 0.82133 0.85972 1.90589 1.36356 1.30673 1.88095 1.21503 1.01235 1.03144 0.90594 1.20323 1.01544 0.98877 0.88409 1.21443 0.93272 0.89206 0.95875 1.22001 1.01130 1.01343 0.94877 1.21533 0.96694 0.95284 0.96764 1.22095 1.02481 0.94912 1.01192 1.22807 0.93437 1.00376 0.88661 1.67567 1.16954 1.12757 1.20920 0.92639 0.94977 0.94339 0.90622 0.90162 0.90628 0.94463 0.93772 0.88851 0.92252 0.88503 0.92294 0.88728 0.89726 0.94088 0.89721 0.86704 0.89410 0.90118 0.84900 0.85178 0.85158 0.82866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.58 13.29 55.43 0.74 -23.84 16 2 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.53 -13.84 9.28 -34.44 -0.32 -14.16 16 8 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 9 C 0.24 5.58 4.96 -5.20 -0.03 5.56 16 10 N -0.60 -12.36 2.46 -175.06 -0.43 -12.79 16 11 C 0.13 2.34 5.34 -4.04 -0.02 2.31 16 12 C 0.05 0.73 5.28 -3.83 -0.02 0.71 16 13 N -0.53 -7.66 4.73 -234.31 -1.11 -8.77 16 14 C 0.01 0.16 5.44 -3.71 -0.02 0.14 16 15 C 0.06 0.76 7.01 37.21 0.26 1.02 16 16 O -0.39 -5.05 10.83 -35.23 -0.38 -5.43 16 17 C 0.07 0.72 7.01 37.21 0.26 0.98 16 18 C 0.02 0.23 5.65 -3.71 -0.02 0.21 16 19 C 0.52 10.62 7.67 -10.98 -0.08 10.53 16 20 O -0.58 -12.53 15.56 5.56 0.09 -12.45 16 21 C -0.12 -2.32 4.11 -27.88 -0.11 -2.43 16 22 C -0.05 -0.85 4.90 -27.88 -0.14 -0.98 16 23 C 0.14 2.11 6.18 -82.58 -0.51 1.60 16 24 C -0.17 -2.13 9.71 -39.44 -0.38 -2.52 16 25 C -0.08 -0.82 10.18 -39.28 -0.40 -1.22 16 26 C -0.19 -2.03 10.11 -39.44 -0.40 -2.43 16 27 C 0.10 1.39 11.18 -17.55 -0.20 1.19 16 28 N -0.47 -7.73 9.88 -9.47 -0.09 -7.82 16 29 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 30 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 31 H 0.04 0.94 6.44 -51.93 -0.33 0.60 16 32 H 0.08 1.40 6.45 -51.93 -0.33 1.07 16 33 H 0.08 1.56 7.42 -51.93 -0.39 1.17 16 34 H 0.08 1.28 8.04 -51.92 -0.42 0.86 16 35 H 0.04 0.63 8.12 -51.93 -0.42 0.21 16 36 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.09 1.27 6.38 -51.93 -0.33 0.94 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.08 0.96 8.09 -51.93 -0.42 0.54 16 43 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.08 1.54 7.40 -51.93 -0.38 1.16 16 45 H 0.11 2.40 7.81 -51.93 -0.41 2.00 16 46 H 0.09 1.46 8.10 -51.93 -0.42 1.04 16 47 H 0.08 1.17 7.83 -51.93 -0.41 0.77 16 48 H 0.13 1.33 7.95 -52.49 -0.42 0.92 16 49 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 50 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 51 H 0.15 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 414.31 15.07 6.24 6.24 Total: -1.00 -30.79 414.31 -10.64 -41.44 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -8.45 Total: 5.54 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: -2.23 Total: 2.17 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: -0.89 Total: -53.22 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.29 Total: -17.87 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -30.79 -10.64 -41.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299585870.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.874 kcal (2) G-P(sol) polarization free energy of solvation -30.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds