Wall clock time and date at job start Sat Apr 11 2020 08:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00264 * 2 1 4 4 H 1.48499 * 109.47358 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47080 * 300.00215 * 3 2 1 6 6 H 1.48502 * 109.47049 * 59.99900 * 3 2 1 7 7 C 1.37875 * 120.00005 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99998 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00332 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47384 * 179.97438 * 9 7 2 11 11 C 1.46494 * 120.00040 * 270.00002 * 10 9 7 12 12 C 1.53003 * 109.47313 * 270.00107 * 11 10 9 13 13 N 1.46895 * 109.47325 * 180.02562 * 12 11 10 14 14 C 1.47016 * 111.00106 * 293.63536 * 13 12 11 15 15 C 1.53095 * 109.25765 * 177.60552 * 14 13 12 16 16 O 1.43021 * 109.25963 * 56.84793 * 15 14 13 17 17 C 1.43012 * 113.73591 * 301.32947 * 16 15 14 18 18 C 1.47017 * 111.00153 * 169.99785 * 13 12 11 19 19 C 1.34779 * 119.99916 * 90.00419 * 10 9 7 20 20 O 1.21273 * 120.00280 * 180.02562 * 19 10 9 21 21 C 1.50706 * 119.99657 * 359.97438 * 19 10 9 22 22 C 1.53000 * 109.46678 * 180.02562 * 21 19 10 23 23 C 1.50707 * 109.46899 * 180.02562 * 22 21 19 24 24 C 1.38227 * 119.62059 * 125.01804 * 23 22 21 25 25 C 1.38627 * 119.15702 * 179.74122 * 24 23 22 26 26 C 1.38669 * 118.42389 * 0.47826 * 25 24 23 27 27 C 1.38186 * 119.16143 * 359.49762 * 26 25 24 28 28 N 1.31856 * 119.61137 * 304.99234 * 23 22 21 29 29 H 0.96992 * 119.99745 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.46543 * 60.00036 * 9 7 2 31 31 H 1.09003 * 109.46724 * 300.00625 * 9 7 2 32 32 H 1.08999 * 109.47429 * 29.99890 * 11 10 9 33 33 H 1.09001 * 109.47287 * 150.00345 * 11 10 9 34 34 H 1.09008 * 109.46956 * 300.00215 * 12 11 10 35 35 H 1.09000 * 109.47187 * 59.99602 * 12 11 10 36 36 H 1.08994 * 109.50185 * 297.54171 * 14 13 12 37 37 H 1.09003 * 109.50393 * 57.67486 * 14 13 12 38 38 H 1.08998 * 109.51199 * 296.91373 * 15 14 13 39 39 H 1.08998 * 109.54414 * 176.80395 * 15 14 13 40 40 H 1.08996 * 109.51003 * 298.72957 * 17 16 15 41 41 H 1.09006 * 109.53842 * 178.62512 * 17 16 15 42 42 H 1.08996 * 109.50542 * 302.33063 * 18 13 12 43 43 H 1.08994 * 109.50163 * 62.41441 * 18 13 12 44 44 H 1.08995 * 109.47052 * 60.00215 * 21 19 10 45 45 H 1.09000 * 109.46920 * 299.99657 * 21 19 10 46 46 H 1.08995 * 109.47755 * 59.99971 * 22 21 19 47 47 H 1.08999 * 109.47059 * 299.99460 * 22 21 19 48 48 H 1.07998 * 120.41916 * 359.95342 * 24 23 22 49 49 H 1.08008 * 120.78688 * 180.22921 * 25 24 23 50 50 H 1.08002 * 120.42244 * 179.78279 * 26 25 24 51 51 H 1.07996 * 119.61757 * 180.25243 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0018 11 6 2.6781 -4.1688 -1.2711 12 6 1.7471 -5.2999 -1.7126 13 7 2.2237 -5.8580 -2.9850 14 6 2.1052 -4.8728 -4.0698 15 6 2.6668 -5.4735 -5.3611 16 8 1.9740 -6.6895 -5.6560 17 6 2.0691 -7.6718 -4.6209 18 6 1.5014 -7.0933 -3.3220 19 6 2.6419 -4.1254 1.1649 20 8 3.4303 -5.0469 1.1639 21 6 2.1535 -3.5529 2.4706 22 6 2.8008 -4.3088 3.6327 23 6 2.3120 -3.7367 4.9385 24 6 1.7312 -4.5710 5.8751 25 6 1.2898 -4.0355 7.0751 26 6 1.4407 -2.6732 7.2852 27 6 2.0315 -1.9017 6.3026 28 7 2.4439 -2.4462 5.1744 29 1 -0.4849 0.8400 0.0004 30 1 0.6241 -2.5567 -0.8903 31 1 0.6247 -2.5570 0.8897 32 1 2.6853 -3.3869 -2.0304 33 1 3.6877 -4.5590 -1.1417 34 1 1.7399 -6.0819 -0.9532 35 1 0.7375 -4.9098 -1.8419 36 1 1.0561 -4.6151 -4.2143 37 1 2.6685 -3.9763 -3.8104 38 1 3.7291 -5.6816 -5.2339 39 1 2.5297 -4.7685 -6.1810 40 1 3.1140 -7.9438 -4.4721 41 1 1.4995 -8.5568 -4.9047 42 1 1.6239 -7.8177 -2.5169 43 1 0.4425 -6.8712 -3.4539 44 1 1.0699 -3.6546 2.5293 45 1 2.4232 -2.4984 2.5284 46 1 3.8844 -4.2069 3.5739 47 1 2.5315 -5.3634 3.5751 48 1 1.6257 -5.6272 5.6758 49 1 0.8355 -4.6638 7.8270 50 1 1.1051 -2.2214 8.2070 51 1 2.1564 -0.8407 6.4601 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299585870.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:25:11 Heat of formation + Delta-G solvation = -64.377100 kcal Electronic energy + Delta-G solvation = -30591.467074 eV Core-core repulsion = 26489.828694 eV Total energy + Delta-G solvation = -4101.638381 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.26924 -40.83004 -40.32863 -37.48365 -36.37267 -35.08498 -34.52916 -33.22821 -32.24415 -31.71208 -30.58022 -29.04573 -27.49424 -25.85293 -25.04700 -24.85659 -24.34986 -23.29311 -22.19040 -21.36995 -19.87577 -18.65719 -18.18625 -17.78778 -17.47602 -17.21812 -17.08743 -16.86975 -16.46459 -16.29390 -16.24436 -16.02848 -15.92363 -15.53697 -15.29409 -14.70779 -14.65343 -14.46441 -14.17474 -14.02426 -13.96385 -13.56064 -13.47602 -13.38553 -13.14078 -12.93386 -12.83928 -12.62410 -12.49426 -12.43782 -12.32883 -12.13401 -12.07632 -11.86201 -11.71181 -11.46053 -10.83925 -10.73845 -10.71587 -10.56480 -10.25682 -9.84364 -9.60056 -9.41710 -8.22842 -6.36607 0.21558 0.44090 1.38063 1.41351 1.51858 1.73272 2.13739 2.40776 2.81169 2.91585 2.98558 3.08352 3.38801 3.66553 3.82309 3.89459 3.97773 4.00666 4.06196 4.11649 4.18081 4.19261 4.22250 4.29841 4.32011 4.38180 4.39403 4.44420 4.57485 4.64337 4.70562 4.77339 4.79023 4.81165 4.83186 4.88807 4.90572 4.95762 5.00514 5.03191 5.17364 5.18015 5.31027 5.32795 5.61944 5.74543 5.86395 5.88980 5.90770 6.03186 6.15541 6.52851 6.78321 7.15974 7.27489 7.38865 8.83237 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008587 B = 0.003007 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3259.853218 B = 9308.934131 C =12002.295451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.025 3.975 3 Si 0.954 3.046 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.278 1.278 7 C -0.543 4.543 8 H 0.050 0.950 9 C 0.257 3.743 10 N -0.599 5.599 11 C 0.129 3.871 12 C 0.061 3.939 13 N -0.538 5.538 14 C 0.011 3.989 15 C 0.068 3.932 16 O -0.403 6.403 17 C 0.066 3.934 18 C 0.017 3.983 19 C 0.516 3.484 20 O -0.587 6.587 21 C -0.113 4.113 22 C -0.042 4.042 23 C 0.110 3.890 24 C -0.173 4.173 25 C -0.074 4.074 26 C -0.175 4.175 27 C 0.080 3.920 28 N -0.518 5.518 29 H 0.267 0.733 30 H 0.019 0.981 31 H 0.028 0.972 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.027 0.973 36 H 0.033 0.967 37 H 0.087 0.913 38 H 0.065 0.935 39 H 0.115 0.885 40 H 0.064 0.936 41 H 0.120 0.880 42 H 0.095 0.905 43 H 0.036 0.964 44 H 0.085 0.915 45 H 0.088 0.912 46 H 0.072 0.928 47 H 0.094 0.906 48 H 0.155 0.845 49 H 0.169 0.831 50 H 0.166 0.834 51 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.713 -11.569 4.653 12.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.176 4.176 3 Si 0.779 3.221 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.204 1.204 7 C -0.582 4.582 8 H 0.069 0.931 9 C 0.136 3.864 10 N -0.329 5.329 11 C 0.005 3.995 12 C -0.068 4.068 13 N -0.264 5.264 14 C -0.117 4.117 15 C -0.008 4.008 16 O -0.322 6.322 17 C -0.011 4.011 18 C -0.111 4.111 19 C 0.305 3.695 20 O -0.469 6.469 21 C -0.153 4.153 22 C -0.081 4.081 23 C -0.027 4.027 24 C -0.193 4.193 25 C -0.099 4.099 26 C -0.194 4.194 27 C -0.077 4.077 28 N -0.228 5.228 29 H 0.076 0.924 30 H 0.037 0.963 31 H 0.046 0.954 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.045 0.955 36 H 0.052 0.948 37 H 0.106 0.894 38 H 0.084 0.916 39 H 0.133 0.867 40 H 0.082 0.918 41 H 0.138 0.862 42 H 0.113 0.887 43 H 0.054 0.946 44 H 0.104 0.896 45 H 0.106 0.894 46 H 0.091 0.909 47 H 0.113 0.887 48 H 0.173 0.827 49 H 0.187 0.813 50 H 0.183 0.817 51 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 1.731 -11.535 3.869 12.289 hybrid contribution -0.951 1.199 0.694 1.680 sum 0.780 -10.336 4.563 11.326 Atomic orbital electron populations 1.70008 1.07171 1.28074 1.50649 1.25597 0.95524 1.02185 0.94276 0.85566 0.78901 0.79694 0.77907 1.19671 1.20111 1.20381 1.21658 0.93185 0.91632 1.51681 0.93136 1.19037 0.87360 0.82853 0.97135 1.48171 1.45220 1.34183 1.05342 1.21178 0.97904 0.95174 0.85202 1.22222 0.96062 0.97086 0.91406 1.62160 1.56361 1.05741 1.02121 1.22917 1.00212 0.96140 0.92425 1.22736 0.96094 0.86170 0.95837 1.87942 1.75238 1.26017 1.42997 1.22789 1.01718 0.91256 0.85293 1.22873 0.95981 0.92431 0.99860 1.20853 0.80310 0.81901 0.86397 1.90569 1.36816 1.31221 1.88297 1.21376 1.01390 1.01740 0.90833 1.20190 1.00361 0.99262 0.88242 1.21348 0.95537 0.89583 0.96247 1.22256 1.00028 1.02127 0.94846 1.22018 0.95567 0.95650 0.96714 1.22485 1.00424 0.95041 1.01484 1.23178 0.94281 1.01478 0.88732 1.67440 1.18617 1.13793 1.22908 0.92352 0.96338 0.95432 0.90960 0.90921 0.91111 0.95519 0.94848 0.89427 0.91634 0.86708 0.91753 0.86182 0.88700 0.94605 0.89643 0.89412 0.90938 0.88708 0.82720 0.81330 0.81681 0.81689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.34 13.29 21.45 0.28 -51.06 16 2 C 0.02 1.31 5.46 84.65 0.46 1.78 16 3 Si 0.95 42.88 29.54 68.60 2.03 44.91 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 6 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 7 C -0.54 -28.89 9.28 25.60 0.24 -28.65 16 8 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16 9 C 0.26 12.52 4.96 85.63 0.43 12.94 16 10 N -0.60 -25.79 2.46 -826.16 -2.03 -27.82 16 11 C 0.13 4.92 5.34 86.38 0.46 5.38 16 12 C 0.06 2.04 5.28 86.31 0.46 2.49 16 13 N -0.54 -15.37 4.73 -895.22 -4.23 -19.60 16 14 C 0.01 0.30 5.44 86.31 0.47 0.77 16 15 C 0.07 1.53 7.01 72.01 0.50 2.03 16 16 O -0.40 -9.79 10.83 -148.98 -1.61 -11.41 16 17 C 0.07 1.33 7.01 72.01 0.50 1.84 16 18 C 0.02 0.39 5.65 86.31 0.49 0.88 16 19 C 0.52 21.83 7.67 87.66 0.67 22.51 16 20 O -0.59 -26.02 15.56 -3.01 -0.05 -26.06 16 21 C -0.11 -4.40 4.11 29.85 0.12 -4.28 16 22 C -0.04 -1.38 4.90 29.85 0.15 -1.24 16 23 C 0.11 3.34 6.18 42.55 0.26 3.60 16 24 C -0.17 -3.95 9.71 22.36 0.22 -3.73 16 25 C -0.07 -1.34 10.18 22.47 0.23 -1.11 16 26 C -0.17 -3.34 10.11 22.36 0.23 -3.11 16 27 C 0.08 2.08 11.18 84.67 0.95 3.03 16 28 N -0.52 -17.28 9.88 -183.88 -1.82 -19.10 16 29 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 30 H 0.02 0.95 8.07 -2.39 -0.02 0.93 16 31 H 0.03 1.41 6.44 -2.39 -0.02 1.39 16 32 H 0.07 2.78 6.45 -2.39 -0.02 2.77 16 33 H 0.07 2.89 7.42 -2.39 -0.02 2.87 16 34 H 0.07 2.42 8.04 -2.38 -0.02 2.40 16 35 H 0.03 0.94 8.12 -2.39 -0.02 0.92 16 36 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.09 2.42 6.38 -2.39 -0.02 2.41 16 38 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.12 1.80 8.14 -2.38 -0.02 1.78 16 42 H 0.09 2.03 8.09 -2.39 -0.02 2.01 16 43 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.09 3.25 7.40 -2.39 -0.02 3.23 16 45 H 0.09 3.91 7.81 -2.39 -0.02 3.89 16 46 H 0.07 2.53 8.10 -2.39 -0.02 2.51 16 47 H 0.09 2.75 7.83 -2.39 -0.02 2.73 16 48 H 0.16 2.72 7.95 -2.91 -0.02 2.70 16 49 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16 50 H 0.17 1.94 8.06 -2.91 -0.02 1.91 16 51 H 0.17 3.59 8.06 -2.91 -0.02 3.56 16 Total: -1.00 -67.32 414.31 0.31 -67.01 By element: Atomic # 1 Polarization: 27.08 SS G_CDS: 0.90 Total: 27.98 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: 6.83 Total: 15.14 kcal Atomic # 7 Polarization: -109.78 SS G_CDS: -7.79 Total: -117.57 kcal Atomic # 8 Polarization: -35.81 SS G_CDS: -1.66 Total: -37.47 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -67.32 0.31 -67.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299585870.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.638 kcal (2) G-P(sol) polarization free energy of solvation -67.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds