Wall clock time and date at job start Sat Apr 11 2020 08:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86802 * 120.00206 * 2 1 4 4 H 1.48497 * 109.47343 * 272.95228 * 3 2 1 5 5 H 1.48501 * 109.46765 * 32.95100 * 3 2 1 6 6 H 1.48503 * 109.47074 * 152.94721 * 3 2 1 7 7 C 1.38813 * 120.00051 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00090 * 339.34188 * 7 2 1 9 9 N 1.36938 * 120.00302 * 159.34035 * 7 2 1 10 10 C 1.46926 * 120.63608 * 152.58529 * 9 7 2 11 11 C 1.53188 * 108.77696 * 126.38860 * 10 9 7 12 12 C 1.53043 * 109.31343 * 54.63736 * 11 10 9 13 13 C 1.53038 * 109.53518 * 298.63368 * 12 11 10 14 14 H 1.09003 * 109.50183 * 301.37611 * 13 12 11 15 15 C 1.53003 * 109.49661 * 181.31845 * 13 12 11 16 16 N 1.46495 * 109.47480 * 175.06628 * 15 13 12 17 17 C 1.34773 * 120.00596 * 179.97438 * 16 15 13 18 18 O 1.21611 * 119.99638 * 359.97438 * 17 16 15 19 19 C 1.47417 * 120.00607 * 180.02562 * 17 16 15 20 20 C 1.36095 * 126.45146 * 180.02562 * 19 17 16 21 21 O 1.34252 * 106.94794 * 179.97438 * 20 19 17 22 22 C 1.34051 * 108.22908 * 359.97438 * 21 20 19 23 23 C 1.50706 * 125.37906 * 180.02562 * 22 21 20 24 24 C 1.54270 * 110.02835 * 57.88681 * 23 22 21 25 25 C 1.54971 * 104.15908 * 217.13771 * 24 23 22 26 26 C 1.54891 * 102.77638 * 37.88628 * 25 24 23 27 27 C 1.53876 * 110.03256 * 300.67129 * 23 22 21 28 28 N 1.29932 * 109.24562 * 0.02562 * 22 21 20 29 29 C 1.46934 * 120.60131 * 332.56182 * 9 7 2 30 30 H 0.96994 * 120.00098 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.58231 * 6.60547 * 10 9 7 32 32 H 1.08996 * 109.70180 * 246.25199 * 10 9 7 33 33 H 1.09003 * 109.49808 * 294.68737 * 11 10 9 34 34 H 1.09004 * 109.49512 * 174.58959 * 11 10 9 35 35 H 1.09004 * 109.46202 * 178.61384 * 12 11 10 36 36 H 1.08999 * 109.44612 * 58.64755 * 12 11 10 37 37 H 1.08992 * 109.47420 * 55.06238 * 15 13 12 38 38 H 1.09009 * 109.47039 * 295.06432 * 15 13 12 39 39 H 0.97006 * 119.99680 * 0.02562 * 16 15 13 40 40 H 1.08000 * 126.52384 * 0.24178 * 20 19 17 41 41 H 1.08994 * 110.01743 * 179.27690 * 23 22 21 42 42 H 1.08999 * 110.49032 * 335.77908 * 24 23 22 43 43 H 1.08999 * 110.48672 * 98.42661 * 24 23 22 44 44 H 1.09002 * 110.71570 * 279.58000 * 25 24 23 45 45 H 1.08993 * 110.76526 * 156.22708 * 25 24 23 46 46 H 1.09002 * 110.48640 * 203.40565 * 26 25 24 47 47 H 1.09003 * 110.48217 * 80.76512 * 26 25 24 48 48 H 1.08993 * 110.02852 * 238.56821 * 27 23 22 49 49 H 1.08997 * 110.03299 * 359.95004 * 27 23 22 50 50 H 1.08999 * 109.56502 * 113.81051 * 29 9 7 51 51 H 1.09007 * 109.62032 * 353.37621 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4353 2.0825 -1.3982 5 1 1.4802 2.6338 0.7616 6 1 3.5775 1.4229 0.6368 7 6 2.0102 -1.2021 -0.0005 8 1 1.5223 -2.1076 0.3290 9 7 3.3135 -1.2402 -0.4190 10 6 4.2352 -2.2627 0.0944 11 6 4.8749 -2.9904 -1.0921 12 6 5.5283 -1.9653 -2.0219 13 6 4.4613 -1.0092 -2.5599 14 1 3.6988 -1.5774 -3.0927 15 6 5.1101 -0.0052 -3.5150 16 7 4.0728 0.8340 -4.1199 17 6 4.4128 1.7963 -5.0001 18 8 5.5808 1.9683 -5.2918 19 6 3.3691 2.6411 -5.6084 20 6 3.5630 3.6445 -6.5072 21 8 2.3532 4.1483 -6.7985 22 6 1.4359 3.4695 -6.0950 23 6 -0.0502 3.7177 -6.1306 24 6 -0.5762 3.5698 -7.5733 25 6 -1.6629 4.6680 -7.6949 26 6 -1.0536 5.8434 -6.8910 27 6 -0.3539 5.1624 -5.6967 28 7 2.0303 2.5638 -5.3777 29 6 3.8162 -0.2590 -1.3904 30 1 -0.4850 0.8400 0.0004 31 1 3.6844 -2.9766 0.7069 32 1 5.0120 -1.7892 0.6947 33 1 4.1081 -3.5400 -1.6381 34 1 5.6315 -3.6853 -0.7277 35 1 6.0055 -2.4824 -2.8544 36 1 6.2775 -1.3992 -1.4686 37 1 5.6454 -0.5422 -4.2979 38 1 5.8089 0.6228 -2.9622 39 1 3.1413 0.6975 -3.8863 40 1 4.5096 3.9703 -6.9125 41 1 -0.5616 3.0149 -5.4729 42 1 0.2250 3.7451 -8.2913 43 1 -1.0127 2.5820 -7.7209 44 1 -2.5985 4.3361 -7.2448 45 1 -1.8128 4.9494 -8.7372 46 1 -1.8386 6.5140 -6.5415 47 1 -0.3294 6.3862 -7.4986 48 1 -1.0133 5.1608 -4.8289 49 1 0.5735 5.6838 -5.4596 50 1 4.5584 0.3804 -0.9126 51 1 2.9893 0.3489 -1.7578 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000558998038.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:26:19 Heat of formation + Delta-G solvation = -36.074533 kcal Electronic energy + Delta-G solvation = -31193.170163 eV Core-core repulsion = 27092.759074 eV Total energy + Delta-G solvation = -4100.411089 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -44.61758 -40.88933 -39.57500 -39.02414 -36.34782 -36.03143 -34.84079 -32.93956 -32.45223 -32.00804 -29.71234 -29.22775 -27.58373 -27.15151 -25.02949 -24.04017 -23.54881 -22.47791 -21.99363 -21.56690 -21.07533 -20.60519 -19.13823 -18.83713 -17.96833 -17.76972 -17.37511 -17.10636 -16.75591 -16.46541 -16.30293 -15.89824 -15.50160 -15.32404 -15.04609 -14.89918 -14.78419 -14.60013 -14.46003 -14.32083 -13.96082 -13.69867 -13.40579 -13.11307 -12.95773 -12.63589 -12.59369 -12.32525 -12.22968 -12.12286 -12.07805 -11.99870 -11.96984 -11.75076 -11.72282 -11.65354 -11.55454 -11.47852 -11.29666 -11.22758 -10.68948 -10.35419 -10.04985 -8.94333 -8.20134 -5.49991 -0.04626 0.81385 1.24167 1.33042 1.40624 1.42919 1.97033 2.09768 2.35532 2.67130 3.00376 3.30257 3.50729 3.51949 3.57969 3.74445 3.79238 3.88358 3.94965 3.99747 4.29277 4.38681 4.39783 4.41735 4.42489 4.45038 4.47061 4.48795 4.56153 4.66342 4.69989 4.72395 4.76197 4.84790 4.87842 4.89151 4.96117 5.03203 5.08167 5.14095 5.19159 5.21937 5.23620 5.26440 5.28781 5.32595 5.45623 5.57919 5.85280 6.10728 6.15682 6.44995 6.89908 6.90335 7.60555 8.01794 8.99741 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010905 B = 0.003275 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2567.081222 B = 8548.637915 C =10260.197812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.023 4.023 3 Si 0.936 3.064 4 H -0.281 1.281 5 H -0.312 1.312 6 H -0.268 1.268 7 C -0.247 4.247 8 H 0.057 0.943 9 N -0.620 5.620 10 C 0.137 3.863 11 C -0.125 4.125 12 C -0.097 4.097 13 C -0.107 4.107 14 H 0.071 0.929 15 C 0.130 3.870 16 N -0.712 5.712 17 C 0.600 3.400 18 O -0.562 6.562 19 C -0.109 4.109 20 C 0.034 3.966 21 O -0.186 6.186 22 C 0.213 3.787 23 C -0.005 4.005 24 C -0.115 4.115 25 C -0.118 4.118 26 C -0.119 4.119 27 C -0.121 4.121 28 N -0.495 5.495 29 C 0.132 3.868 30 H 0.261 0.739 31 H 0.054 0.946 32 H 0.033 0.967 33 H 0.052 0.948 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.068 0.932 39 H 0.407 0.593 40 H 0.265 0.735 41 H 0.110 0.890 42 H 0.072 0.928 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.086 0.914 46 H 0.083 0.917 47 H 0.071 0.929 48 H 0.081 0.919 49 H 0.058 0.942 50 H 0.023 0.977 51 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.156 8.614 -17.993 20.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.219 4.219 3 Si 0.766 3.234 4 H -0.208 1.208 5 H -0.241 1.241 6 H -0.193 1.193 7 C -0.377 4.377 8 H 0.074 0.926 9 N -0.345 5.345 10 C 0.012 3.988 11 C -0.164 4.164 12 C -0.135 4.135 13 C -0.127 4.127 14 H 0.089 0.911 15 C 0.006 3.994 16 N -0.362 5.362 17 C 0.386 3.614 18 O -0.443 6.443 19 C -0.228 4.228 20 C -0.040 4.040 21 O -0.072 6.072 22 C 0.003 3.997 23 C -0.025 4.025 24 C -0.153 4.153 25 C -0.155 4.155 26 C -0.156 4.156 27 C -0.160 4.160 28 N -0.224 5.224 29 C 0.006 3.994 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.051 0.949 33 H 0.071 0.929 34 H 0.110 0.890 35 H 0.106 0.894 36 H 0.087 0.913 37 H 0.107 0.893 38 H 0.086 0.914 39 H 0.243 0.757 40 H 0.281 0.719 41 H 0.128 0.872 42 H 0.090 0.910 43 H 0.099 0.901 44 H 0.097 0.903 45 H 0.105 0.895 46 H 0.101 0.899 47 H 0.090 0.910 48 H 0.100 0.900 49 H 0.077 0.923 50 H 0.041 0.959 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 4.562 8.343 -17.724 20.114 hybrid contribution -0.077 1.100 0.379 1.166 sum 4.485 9.443 -17.345 20.252 Atomic orbital electron populations 1.69931 1.07034 1.26974 1.55618 1.25730 0.95654 1.00021 1.00457 0.86084 0.78684 0.81440 0.77165 1.20849 1.24091 1.19326 1.18902 0.86836 0.93537 1.38405 0.92550 1.44501 1.07954 1.34798 1.47203 1.21198 0.91929 0.90456 0.95169 1.21896 0.99909 0.97756 0.96799 1.21380 0.96150 0.96313 0.99654 1.21810 0.98951 0.96735 0.95244 0.91102 1.21548 0.89640 0.92080 0.96094 1.46049 1.12246 1.34537 1.43338 1.16920 0.86355 0.79445 0.78633 1.90761 1.18556 1.71136 1.63827 1.21842 0.91290 1.03791 1.05884 1.25865 0.88686 0.93236 0.96200 1.84390 1.15532 1.51897 1.55377 1.26756 0.95118 0.88311 0.89525 1.20763 0.79812 1.00511 1.01390 1.22509 0.99268 1.01180 0.92391 1.22523 0.97604 0.93926 1.01446 1.22375 0.99929 0.97845 0.95471 1.22282 1.01267 0.92124 1.00289 1.70842 1.05078 1.22851 1.23627 1.21348 0.96273 0.91722 0.90026 0.92978 0.92705 0.94893 0.92919 0.88962 0.89417 0.91271 0.89298 0.91412 0.75722 0.71914 0.87168 0.90973 0.90066 0.90296 0.89492 0.89869 0.91005 0.90028 0.92289 0.95885 0.93702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.03 13.97 21.65 0.30 -59.72 16 2 C -0.02 -1.38 5.23 84.86 0.44 -0.94 16 3 Si 0.94 48.64 24.34 68.60 1.67 50.31 16 4 H -0.28 -14.27 6.62 99.48 0.66 -13.61 16 5 H -0.31 -16.45 7.11 99.48 0.71 -15.74 16 6 H -0.27 -13.56 6.64 99.48 0.66 -12.90 16 7 C -0.25 -14.16 10.03 84.03 0.84 -13.32 16 8 H 0.06 3.50 8.06 -2.91 -0.02 3.47 16 9 N -0.62 -29.39 2.77 -699.08 -1.94 -31.33 16 10 C 0.14 5.18 6.52 86.36 0.56 5.74 16 11 C -0.12 -3.63 6.08 30.67 0.19 -3.44 16 12 C -0.10 -2.60 5.17 30.62 0.16 -2.44 16 13 C -0.11 -3.55 2.37 -10.71 -0.03 -3.58 16 14 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 15 C 0.13 3.97 5.07 86.38 0.44 4.41 16 16 N -0.71 -24.61 5.33 -466.38 -2.48 -27.09 16 17 C 0.60 20.51 7.81 86.66 0.68 21.19 16 18 O -0.56 -20.19 16.89 -4.06 -0.07 -20.26 16 19 C -0.11 -3.41 6.99 40.41 0.28 -3.13 16 20 C 0.03 0.80 11.95 67.32 0.80 1.60 16 21 O -0.19 -4.29 10.57 0.42 0.00 -4.29 16 22 C 0.21 5.58 6.50 88.39 0.57 6.16 16 23 C -0.01 -0.11 3.44 -10.81 -0.04 -0.15 16 24 C -0.12 -1.74 6.36 31.70 0.20 -1.54 16 25 C -0.12 -1.30 6.91 31.91 0.22 -1.08 16 26 C -0.12 -1.44 6.83 31.67 0.22 -1.22 16 27 C -0.12 -2.09 6.45 31.32 0.20 -1.89 16 28 N -0.49 -16.32 11.06 -293.03 -3.24 -19.56 16 29 C 0.13 5.65 3.29 86.36 0.28 5.94 16 30 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 31 H 0.05 2.12 7.93 -2.39 -0.02 2.10 16 32 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.09 2.07 8.14 -2.39 -0.02 2.06 16 35 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 38 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 39 H 0.41 15.31 7.43 -92.70 -0.69 14.62 16 40 H 0.27 3.94 8.06 -2.91 -0.02 3.92 16 41 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 42 H 0.07 1.10 7.72 -2.39 -0.02 1.08 16 43 H 0.08 1.17 8.14 -2.39 -0.02 1.16 16 44 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.09 0.73 8.14 -2.39 -0.02 0.72 16 46 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 49 H 0.06 1.13 7.67 -2.39 -0.02 1.11 16 50 H 0.02 1.01 7.07 -2.39 -0.02 0.99 16 51 H 0.04 2.17 3.71 -2.38 -0.01 2.16 16 Total: -1.00 -74.39 400.36 0.43 -73.96 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: 0.15 Total: 25.65 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: 6.03 Total: 12.32 kcal Atomic # 7 Polarization: -130.34 SS G_CDS: -7.36 Total: -137.70 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -0.06 Total: -24.54 kcal Atomic # 14 Polarization: 48.64 SS G_CDS: 1.67 Total: 50.31 kcal Total: -74.39 0.43 -73.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000558998038.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.884 kcal (2) G-P(sol) polarization free energy of solvation -74.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds