Wall clock time and date at job start Sat Apr 11 2020 08:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48503 * 109.47294 * 269.99778 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99638 * 3 2 1 6 6 H 1.48496 * 109.47166 * 149.99470 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.52996 * 109.47059 * 179.72430 * 10 9 7 12 12 H 1.09008 * 109.47304 * 304.99667 * 11 10 9 13 13 C 1.53001 * 109.47238 * 64.99625 * 11 10 9 14 14 C 1.53003 * 109.47020 * 180.02562 * 13 11 10 15 15 C 1.53007 * 109.46963 * 299.99597 * 14 13 11 16 16 C 1.53001 * 109.46923 * 60.00343 * 15 14 13 17 17 C 1.52996 * 109.47238 * 300.00062 * 16 15 14 18 18 H 1.09000 * 109.47448 * 299.99641 * 17 16 15 19 19 N 1.46508 * 109.47348 * 180.02562 * 17 16 15 20 20 C 1.34771 * 120.00130 * 84.99802 * 19 17 16 21 21 O 1.21619 * 119.99790 * 0.02562 * 20 19 17 22 22 C 1.47410 * 120.00164 * 180.02562 * 20 19 17 23 23 C 1.36099 * 126.45076 * 180.02562 * 22 20 19 24 24 O 1.34255 * 106.94951 * 179.97438 * 23 22 20 25 25 C 1.34051 * 108.23126 * 359.97438 * 24 23 22 26 26 C 1.50700 * 125.38247 * 179.97438 * 25 24 23 27 27 C 1.52998 * 109.47199 * 269.97373 * 26 25 24 28 28 C 1.52995 * 117.49752 * 243.74779 * 27 26 25 29 29 C 1.53000 * 117.49805 * 175.08499 * 27 26 25 30 30 N 1.29939 * 109.24017 * 359.72070 * 25 24 23 31 31 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 32 32 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 33 33 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 34 34 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 35 35 H 1.09001 * 109.47309 * 300.00020 * 13 11 10 36 36 H 1.08995 * 109.46988 * 60.00458 * 13 11 10 37 37 H 1.08994 * 109.47663 * 59.99860 * 14 13 11 38 38 H 1.08997 * 109.47193 * 180.02562 * 14 13 11 39 39 H 1.09001 * 109.47204 * 179.97438 * 15 14 13 40 40 H 1.08994 * 109.47145 * 300.00580 * 15 14 13 41 41 H 1.09003 * 109.47318 * 59.99630 * 16 15 14 42 42 H 1.09001 * 109.47309 * 180.02562 * 16 15 14 43 43 H 0.96997 * 119.99338 * 264.99475 * 19 17 16 44 44 H 1.07991 * 126.52155 * 0.02562 * 23 22 20 45 45 H 1.08997 * 109.46622 * 29.97693 * 26 25 24 46 46 H 1.09000 * 109.46813 * 149.97355 * 26 25 24 47 47 H 1.08997 * 115.54763 * 29.41594 * 27 26 25 48 48 H 1.08993 * 117.50368 * 359.97438 * 28 27 26 49 49 H 1.09003 * 117.49845 * 145.02605 * 28 27 26 50 50 H 1.08993 * 117.49635 * 214.97752 * 29 27 26 51 51 H 1.09001 * 117.49823 * 0.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 6 1.0637 -4.8197 0.0127 12 1 0.3792 -4.7086 0.8538 13 6 0.2694 -4.8177 -1.2949 14 6 -0.7254 -5.9802 -1.2892 15 6 0.0350 -7.3014 -1.1563 16 6 0.8293 -7.3033 0.1513 17 6 1.8239 -6.1408 0.1457 18 1 2.5084 -6.2522 -0.6953 19 7 2.5850 -6.1430 1.3976 20 6 3.6843 -6.9135 1.5165 21 8 4.0448 -7.6067 0.5845 22 6 4.4497 -6.9162 2.7763 23 6 5.5727 -7.6389 3.0386 24 8 5.9423 -7.3455 4.2955 25 6 5.0666 -6.4618 4.7947 26 6 5.1167 -5.8711 6.1802 27 6 4.3191 -6.7554 7.1408 28 6 3.0790 -6.1457 7.7975 29 6 4.3437 -6.3868 8.6256 30 7 4.1707 -6.1910 3.8934 31 1 -0.4850 0.8401 -0.0004 32 1 0.3555 -2.3880 0.0005 33 1 2.6849 -3.7190 -0.8822 34 1 2.6842 -3.7101 0.8977 35 1 -0.2726 -3.8767 -1.3895 36 1 0.9538 -4.9289 -2.1359 37 1 -1.4097 -5.8688 -0.4482 38 1 -1.2909 -5.9791 -2.2209 39 1 -0.6737 -8.1296 -1.1517 40 1 0.7193 -7.4128 -1.9973 41 1 0.1449 -7.1917 0.9924 42 1 1.3713 -8.2443 0.2458 43 1 2.2976 -5.5898 2.1407 44 1 6.0720 -8.3183 2.3638 45 1 6.1528 -5.8146 6.5137 46 1 4.6850 -4.8703 6.1643 47 1 4.2843 -7.8145 6.8856 48 1 2.8315 -5.1146 7.5455 49 1 2.2284 -6.8039 7.9748 50 1 4.3245 -7.2035 9.3471 51 1 4.9277 -5.5141 8.9179 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268777377.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:23:38 Heat of formation + Delta-G solvation = -1.803891 kcal Electronic energy + Delta-G solvation = -30595.204838 eV Core-core repulsion = 26496.279835 eV Total energy + Delta-G solvation = -4098.925003 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -43.61960 -39.97725 -38.13559 -37.93562 -35.05024 -34.58127 -34.01408 -32.08648 -31.84993 -29.67013 -29.29396 -28.13572 -25.32388 -24.35003 -22.97637 -22.72729 -22.32763 -21.82696 -20.89947 -20.59938 -20.33792 -19.69777 -18.18428 -17.15134 -16.99862 -16.64540 -16.19562 -15.98466 -15.02032 -14.81920 -14.68642 -14.56567 -14.31018 -14.11637 -13.83983 -13.73226 -13.60647 -13.25157 -13.17955 -12.99688 -12.64209 -12.39334 -12.15169 -11.85815 -11.80464 -11.51554 -11.39989 -11.07780 -10.96116 -10.86518 -10.84377 -10.78086 -10.68624 -10.47870 -10.38719 -10.21372 -10.10954 -9.96471 -9.85982 -9.60425 -9.22663 -8.87960 -8.77993 -6.87365 -5.73430 -3.01209 0.94802 1.84775 2.32706 3.11374 3.28987 3.40629 3.45516 3.50708 3.52280 3.63074 4.32368 4.49071 4.50360 4.59952 4.66252 4.67206 4.85313 4.89415 4.96531 5.10517 5.12984 5.21572 5.28998 5.31088 5.38046 5.40109 5.46784 5.57504 5.60202 5.62244 5.67029 5.70963 5.75777 5.78401 5.80033 5.88711 5.93168 6.14911 6.18789 6.24241 6.28546 6.32260 6.43340 6.57732 6.60188 6.73827 6.84842 6.95191 7.26551 7.64766 7.73798 8.21288 8.45895 9.57083 10.15180 10.50431 11.49555 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.006942 B = 0.003144 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4032.705587 B = 8903.833684 C =11405.786533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.236 4.236 8 H 0.068 0.932 9 N -0.730 5.730 10 C 0.158 3.842 11 C -0.099 4.099 12 H 0.075 0.925 13 C -0.106 4.106 14 C -0.122 4.122 15 C -0.114 4.114 16 C -0.126 4.126 17 C 0.153 3.847 18 H 0.089 0.911 19 N -0.699 5.699 20 C 0.602 3.398 21 O -0.543 6.543 22 C -0.067 4.067 23 C 0.007 3.993 24 O -0.197 6.197 25 C 0.201 3.799 26 C 0.007 3.993 27 C -0.156 4.156 28 C -0.172 4.172 29 C -0.174 4.174 30 N -0.450 5.450 31 H 0.254 0.746 32 H 0.384 0.616 33 H 0.018 0.982 34 H 0.020 0.980 35 H 0.080 0.920 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.411 0.589 44 H 0.230 0.770 45 H 0.100 0.900 46 H 0.112 0.888 47 H 0.106 0.894 48 H 0.102 0.898 49 H 0.096 0.904 50 H 0.096 0.904 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.856 -19.110 12.188 23.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.367 4.367 8 H 0.086 0.914 9 N -0.374 5.374 10 C 0.031 3.969 11 C -0.119 4.119 12 H 0.094 0.906 13 C -0.145 4.145 14 C -0.159 4.159 15 C -0.152 4.152 16 C -0.165 4.165 17 C 0.049 3.951 18 H 0.107 0.893 19 N -0.348 5.348 20 C 0.387 3.613 21 O -0.421 6.421 22 C -0.187 4.187 23 C -0.066 4.066 24 O -0.083 6.083 25 C -0.008 4.008 26 C -0.031 4.031 27 C -0.175 4.175 28 C -0.208 4.208 29 C -0.211 4.211 30 N -0.180 5.180 31 H 0.064 0.936 32 H 0.218 0.782 33 H 0.036 0.964 34 H 0.037 0.963 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.247 0.753 44 H 0.246 0.754 45 H 0.118 0.882 46 H 0.130 0.870 47 H 0.124 0.876 48 H 0.120 0.880 49 H 0.114 0.886 50 H 0.115 0.885 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 6.745 -19.034 11.611 23.294 hybrid contribution 0.608 0.724 0.172 0.961 sum 7.353 -18.310 11.783 22.982 Atomic orbital electron populations 1.69658 1.05042 1.25539 1.58066 1.24710 0.95510 0.97575 1.03209 0.86206 0.78654 0.83956 0.77500 1.21779 1.21793 1.20842 1.19224 0.90989 0.84225 1.42276 0.91372 1.42352 1.05794 0.99867 1.89426 1.20665 0.93034 0.85333 0.97912 1.21590 0.97750 0.93281 0.99255 0.90626 1.21494 0.97643 0.98872 0.96446 1.21604 0.98095 0.94537 1.01683 1.21485 0.98744 0.97682 0.97305 1.21899 0.97851 0.98331 0.98388 1.21084 0.92706 0.95135 0.86195 0.89278 1.45913 1.26559 1.44676 1.17651 1.16717 0.80127 0.79987 0.84454 1.90806 1.69451 1.42800 1.39038 1.21874 0.99283 1.01727 0.95854 1.25261 0.96715 1.01014 0.83658 1.84382 1.48156 1.49873 1.25905 1.26129 0.85771 0.91072 0.97813 1.19729 1.02589 0.98546 0.82264 1.22128 1.01867 0.99785 0.93720 1.23119 0.91879 1.02588 1.03264 1.23031 1.01731 1.03638 0.92712 1.70816 1.25146 1.22421 0.99610 0.93591 0.78219 0.96443 0.96255 0.90177 0.92012 0.91999 0.92070 0.92151 0.91859 0.91822 0.91810 0.75279 0.75375 0.88220 0.87001 0.87564 0.87997 0.88600 0.88525 0.88315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.30 13.06 55.49 0.72 -27.58 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.71 29.55 -169.99 -5.02 17.68 16 4 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.73 -18.56 5.33 -59.91 -0.32 -18.88 16 10 C 0.16 3.27 5.57 -4.04 -0.02 3.25 16 11 C -0.10 -1.62 1.80 -90.62 -0.16 -1.79 16 12 H 0.08 1.26 8.14 -51.92 -0.42 0.84 16 13 C -0.11 -1.66 5.08 -26.73 -0.14 -1.80 16 14 C -0.12 -1.55 5.92 -26.73 -0.16 -1.70 16 15 C -0.11 -1.34 5.92 -26.73 -0.16 -1.50 16 16 C -0.13 -1.61 5.49 -26.73 -0.15 -1.76 16 17 C 0.15 2.25 1.90 -67.93 -0.13 2.12 16 18 H 0.09 1.44 7.57 -51.93 -0.39 1.05 16 19 N -0.70 -10.33 4.30 -54.88 -0.24 -10.57 16 20 C 0.60 9.21 7.78 -12.53 -0.10 9.11 16 21 O -0.54 -9.30 16.55 5.26 0.09 -9.21 16 22 C -0.07 -0.91 6.99 -83.02 -0.58 -1.49 16 23 C 0.01 0.08 11.95 29.96 0.36 0.44 16 24 O -0.20 -2.08 10.73 6.51 0.07 -2.01 16 25 C 0.20 2.19 7.51 -13.08 -0.10 2.09 16 26 C 0.01 0.05 6.12 -27.88 -0.17 -0.12 16 27 C -0.16 -1.09 5.72 -90.62 -0.52 -1.61 16 28 C -0.17 -1.19 10.18 -26.69 -0.27 -1.47 16 29 C -0.17 -0.98 10.26 -26.69 -0.27 -1.26 16 30 N -0.45 -6.02 11.06 -7.65 -0.08 -6.10 16 31 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.38 10.13 6.85 -40.82 -0.28 9.85 16 33 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.02 0.42 7.31 -51.93 -0.38 0.04 16 35 H 0.08 1.44 7.18 -51.93 -0.37 1.07 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.41 6.06 8.12 -40.82 -0.33 5.73 16 44 H 0.23 1.78 8.06 -52.49 -0.42 1.36 16 45 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.11 0.82 7.88 -51.93 -0.41 0.41 16 47 H 0.11 0.80 8.07 -51.93 -0.42 0.38 16 48 H 0.10 0.73 8.03 -51.93 -0.42 0.31 16 49 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 50 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 51 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 416.64 15.07 6.28 6.28 Total: -1.00 -33.19 416.64 -9.78 -42.98 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: -8.47 Total: 12.26 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -2.81 Total: -4.86 kcal Atomic # 7 Polarization: -63.21 SS G_CDS: 0.08 Total: -63.12 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.16 Total: -11.22 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -33.19 -9.78 -42.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268777377.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.173 kcal (2) G-P(sol) polarization free energy of solvation -33.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds