Wall clock time and date at job start Sat Apr 11 2020 08:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48503 * 109.47294 * 269.99778 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99638 * 3 2 1 6 6 H 1.48496 * 109.47166 * 149.99470 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.52996 * 109.47059 * 179.72430 * 10 9 7 12 12 H 1.09008 * 109.47304 * 304.99667 * 11 10 9 13 13 C 1.53001 * 109.47238 * 64.99625 * 11 10 9 14 14 C 1.53003 * 109.47020 * 180.02562 * 13 11 10 15 15 C 1.53007 * 109.46963 * 299.99597 * 14 13 11 16 16 C 1.53001 * 109.46923 * 60.00343 * 15 14 13 17 17 C 1.52996 * 109.47238 * 300.00062 * 16 15 14 18 18 H 1.09000 * 109.47448 * 299.99641 * 17 16 15 19 19 N 1.46508 * 109.47348 * 180.02562 * 17 16 15 20 20 C 1.34771 * 120.00130 * 84.99802 * 19 17 16 21 21 O 1.21619 * 119.99790 * 0.02562 * 20 19 17 22 22 C 1.47410 * 120.00164 * 180.02562 * 20 19 17 23 23 C 1.36099 * 126.45076 * 180.02562 * 22 20 19 24 24 O 1.34255 * 106.94951 * 179.97438 * 23 22 20 25 25 C 1.34051 * 108.23126 * 359.97438 * 24 23 22 26 26 C 1.50700 * 125.38247 * 179.97438 * 25 24 23 27 27 C 1.52998 * 109.47199 * 269.97373 * 26 25 24 28 28 C 1.52995 * 117.49752 * 243.74779 * 27 26 25 29 29 C 1.53000 * 117.49805 * 175.08499 * 27 26 25 30 30 N 1.29939 * 109.24017 * 359.72070 * 25 24 23 31 31 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 32 32 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 33 33 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 34 34 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 35 35 H 1.09001 * 109.47309 * 300.00020 * 13 11 10 36 36 H 1.08995 * 109.46988 * 60.00458 * 13 11 10 37 37 H 1.08994 * 109.47663 * 59.99860 * 14 13 11 38 38 H 1.08997 * 109.47193 * 180.02562 * 14 13 11 39 39 H 1.09001 * 109.47204 * 179.97438 * 15 14 13 40 40 H 1.08994 * 109.47145 * 300.00580 * 15 14 13 41 41 H 1.09003 * 109.47318 * 59.99630 * 16 15 14 42 42 H 1.09001 * 109.47309 * 180.02562 * 16 15 14 43 43 H 0.96997 * 119.99338 * 264.99475 * 19 17 16 44 44 H 1.07991 * 126.52155 * 0.02562 * 23 22 20 45 45 H 1.08997 * 109.46622 * 29.97693 * 26 25 24 46 46 H 1.09000 * 109.46813 * 149.97355 * 26 25 24 47 47 H 1.08997 * 115.54763 * 29.41594 * 27 26 25 48 48 H 1.08993 * 117.50368 * 359.97438 * 28 27 26 49 49 H 1.09003 * 117.49845 * 145.02605 * 28 27 26 50 50 H 1.08993 * 117.49635 * 214.97752 * 29 27 26 51 51 H 1.09001 * 117.49823 * 0.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 6 1.0637 -4.8197 0.0127 12 1 0.3792 -4.7086 0.8538 13 6 0.2694 -4.8177 -1.2949 14 6 -0.7254 -5.9802 -1.2892 15 6 0.0350 -7.3014 -1.1563 16 6 0.8293 -7.3033 0.1513 17 6 1.8239 -6.1408 0.1457 18 1 2.5084 -6.2522 -0.6953 19 7 2.5850 -6.1430 1.3976 20 6 3.6843 -6.9135 1.5165 21 8 4.0448 -7.6067 0.5845 22 6 4.4497 -6.9162 2.7763 23 6 5.5727 -7.6389 3.0386 24 8 5.9423 -7.3455 4.2955 25 6 5.0666 -6.4618 4.7947 26 6 5.1167 -5.8711 6.1802 27 6 4.3191 -6.7554 7.1408 28 6 3.0790 -6.1457 7.7975 29 6 4.3437 -6.3868 8.6256 30 7 4.1707 -6.1910 3.8934 31 1 -0.4850 0.8401 -0.0004 32 1 0.3555 -2.3880 0.0005 33 1 2.6849 -3.7190 -0.8822 34 1 2.6842 -3.7101 0.8977 35 1 -0.2726 -3.8767 -1.3895 36 1 0.9538 -4.9289 -2.1359 37 1 -1.4097 -5.8688 -0.4482 38 1 -1.2909 -5.9791 -2.2209 39 1 -0.6737 -8.1296 -1.1517 40 1 0.7193 -7.4128 -1.9973 41 1 0.1449 -7.1917 0.9924 42 1 1.3713 -8.2443 0.2458 43 1 2.2976 -5.5898 2.1407 44 1 6.0720 -8.3183 2.3638 45 1 6.1528 -5.8146 6.5137 46 1 4.6850 -4.8703 6.1643 47 1 4.2843 -7.8145 6.8856 48 1 2.8315 -5.1146 7.5455 49 1 2.2284 -6.8039 7.9748 50 1 4.3245 -7.2035 9.3471 51 1 4.9277 -5.5141 8.9179 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268777377.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:23:36 Heat of formation + Delta-G solvation = -23.741132 kcal Electronic energy + Delta-G solvation = -30596.156108 eV Core-core repulsion = 26496.279835 eV Total energy + Delta-G solvation = -4099.876273 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -44.50598 -41.20067 -39.37201 -38.48355 -36.44857 -35.99966 -35.17429 -33.70788 -32.85986 -31.24507 -30.57882 -28.93401 -27.04500 -25.44531 -24.74986 -23.31642 -23.22510 -22.76463 -22.01891 -21.71834 -21.37500 -20.81580 -19.44688 -18.95825 -17.87255 -17.59259 -17.37975 -16.74844 -16.68953 -16.06410 -15.95057 -15.54471 -15.47241 -15.17751 -15.15615 -14.92099 -14.75909 -14.59065 -14.52893 -14.09752 -13.79620 -13.67177 -13.34465 -12.98115 -12.78550 -12.75821 -12.69268 -12.34487 -12.30650 -12.22726 -12.11890 -11.96220 -11.90079 -11.87064 -11.64609 -11.41030 -11.30144 -11.21801 -11.09180 -10.92298 -10.89559 -10.21538 -9.95627 -9.00691 -7.96327 -5.24915 0.02930 0.89862 1.45419 1.47104 1.51002 1.55622 2.01832 2.18682 2.54271 2.75650 2.91657 3.36525 3.49262 3.63082 3.73902 3.76607 3.79925 3.91226 4.00662 4.08249 4.10467 4.23241 4.26184 4.35826 4.41808 4.44025 4.47044 4.49354 4.54898 4.58586 4.68103 4.73578 4.82080 4.85881 4.86592 4.99470 5.02500 5.08804 5.09301 5.13082 5.23251 5.26334 5.27333 5.29163 5.30467 5.41622 5.44807 5.47079 5.57620 6.25282 6.27219 6.55034 7.02669 7.32697 8.06826 8.33012 9.26869 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.006942 B = 0.003144 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4032.705587 B = 8903.833684 C =11405.786533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.070 4.070 3 Si 0.972 3.028 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.273 1.273 7 C -0.248 4.248 8 H 0.067 0.933 9 N -0.738 5.738 10 C 0.162 3.838 11 C -0.085 4.085 12 H 0.074 0.926 13 C -0.104 4.104 14 C -0.114 4.114 15 C -0.109 4.109 16 C -0.118 4.118 17 C 0.160 3.840 18 H 0.075 0.925 19 N -0.700 5.700 20 C 0.601 3.399 21 O -0.566 6.566 22 C -0.102 4.102 23 C 0.029 3.971 24 O -0.192 6.192 25 C 0.207 3.793 26 C 0.008 3.992 27 C -0.161 4.161 28 C -0.187 4.187 29 C -0.156 4.156 30 N -0.481 5.481 31 H 0.252 0.748 32 H 0.377 0.623 33 H 0.007 0.993 34 H 0.014 0.986 35 H 0.052 0.948 36 H 0.058 0.942 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.062 0.938 43 H 0.410 0.590 44 H 0.259 0.741 45 H 0.125 0.875 46 H 0.112 0.888 47 H 0.101 0.899 48 H 0.096 0.904 49 H 0.093 0.907 50 H 0.106 0.894 51 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.794 -20.156 13.193 25.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.263 4.263 3 Si 0.800 3.200 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.198 1.198 7 C -0.380 4.380 8 H 0.085 0.915 9 N -0.381 5.381 10 C 0.035 3.965 11 C -0.104 4.104 12 H 0.092 0.908 13 C -0.142 4.142 14 C -0.152 4.152 15 C -0.147 4.147 16 C -0.157 4.157 17 C 0.056 3.944 18 H 0.093 0.907 19 N -0.348 5.348 20 C 0.388 3.612 21 O -0.447 6.447 22 C -0.221 4.221 23 C -0.045 4.045 24 O -0.078 6.078 25 C -0.003 4.003 26 C -0.030 4.030 27 C -0.180 4.180 28 C -0.224 4.224 29 C -0.193 4.193 30 N -0.211 5.211 31 H 0.061 0.939 32 H 0.210 0.790 33 H 0.025 0.975 34 H 0.032 0.968 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.103 0.897 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.081 0.919 43 H 0.246 0.754 44 H 0.274 0.726 45 H 0.143 0.857 46 H 0.130 0.870 47 H 0.119 0.881 48 H 0.115 0.885 49 H 0.112 0.888 50 H 0.125 0.875 51 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 7.695 -20.100 12.620 24.950 hybrid contribution 0.372 1.026 -0.105 1.096 sum 8.068 -19.074 12.514 24.198 Atomic orbital electron populations 1.69805 1.06418 1.26118 1.59233 1.25511 0.96420 1.00852 1.03487 0.85174 0.77687 0.79633 0.77467 1.21393 1.21748 1.19777 1.19558 0.91219 0.85564 1.41639 0.91463 1.42484 1.05598 1.00751 1.89275 1.20722 0.93662 0.85248 0.96875 1.21427 0.96803 0.92414 0.99781 0.90755 1.21435 0.97972 0.99070 0.95713 1.21550 0.97379 0.93561 1.02674 1.21472 0.98942 0.97760 0.96491 1.21839 0.97389 0.96968 0.99480 1.20978 0.92699 0.94886 0.85848 0.90714 1.45927 1.26719 1.44686 1.17488 1.16940 0.79953 0.79433 0.84890 1.90778 1.70049 1.43809 1.40026 1.21769 1.00764 1.03906 0.95690 1.25789 0.95373 0.99678 0.83688 1.84424 1.47932 1.49729 1.25703 1.26780 0.84872 0.90277 0.98369 1.19937 1.04244 0.98253 0.80558 1.22075 1.01960 0.99319 0.94684 1.23160 0.92413 1.02292 1.04524 1.23119 1.00186 1.04191 0.91782 1.70776 1.26563 1.23514 1.00209 0.93883 0.79040 0.97468 0.96791 0.92963 0.92323 0.91600 0.90635 0.89709 0.91810 0.91113 0.91914 0.75361 0.72569 0.85720 0.87018 0.88129 0.88547 0.88802 0.87529 0.87099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.35 13.06 21.65 0.28 -59.07 16 2 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 3 Si 0.97 46.93 29.55 68.60 2.03 48.96 16 4 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 5 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 6 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 7 C -0.25 -14.32 9.99 84.03 0.84 -13.48 16 8 H 0.07 3.81 7.83 -2.91 -0.02 3.79 16 9 N -0.74 -38.55 5.33 -343.46 -1.83 -40.38 16 10 C 0.16 6.89 5.57 86.38 0.48 7.37 16 11 C -0.08 -2.82 1.80 -10.79 -0.02 -2.84 16 12 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 13 C -0.10 -3.27 5.08 30.60 0.16 -3.11 16 14 C -0.11 -2.74 5.92 30.60 0.18 -2.56 16 15 C -0.11 -2.32 5.92 30.60 0.18 -2.14 16 16 C -0.12 -2.88 5.49 30.59 0.17 -2.71 16 17 C 0.16 4.73 1.90 44.99 0.09 4.82 16 18 H 0.07 2.45 7.57 -2.39 -0.02 2.43 16 19 N -0.70 -21.01 4.30 -445.80 -1.92 -22.93 16 20 C 0.60 18.53 7.78 86.66 0.67 19.20 16 21 O -0.57 -19.41 16.55 -4.09 -0.07 -19.48 16 22 C -0.10 -2.76 6.99 40.41 0.28 -2.48 16 23 C 0.03 0.59 11.95 67.32 0.80 1.40 16 24 O -0.19 -3.75 10.73 0.39 0.00 -3.74 16 25 C 0.21 4.29 7.51 88.39 0.66 4.95 16 26 C 0.01 0.10 6.12 29.85 0.18 0.29 16 27 C -0.16 -2.05 5.72 -10.80 -0.06 -2.12 16 28 C -0.19 -2.47 10.18 30.62 0.31 -2.16 16 29 C -0.16 -1.45 10.26 30.62 0.31 -1.14 16 30 N -0.48 -12.81 11.06 -293.03 -3.24 -16.05 16 31 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 32 H 0.38 20.55 6.85 -92.71 -0.64 19.91 16 33 H 0.01 0.33 8.14 -2.38 -0.02 0.31 16 34 H 0.01 0.62 7.31 -2.39 -0.02 0.60 16 35 H 0.05 1.94 7.18 -2.39 -0.02 1.92 16 36 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.41 12.43 8.12 -92.71 -0.75 11.67 16 44 H 0.26 3.47 8.06 -2.92 -0.02 3.45 16 45 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.11 1.53 7.88 -2.39 -0.02 1.51 16 47 H 0.10 1.40 8.07 -2.39 -0.02 1.38 16 48 H 0.10 1.36 8.03 -2.39 -0.02 1.34 16 49 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 50 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 51 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -71.83 416.64 0.52 -71.31 By element: Atomic # 1 Polarization: 42.18 SS G_CDS: -0.45 Total: 41.73 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: 5.71 Total: -0.35 kcal Atomic # 7 Polarization: -131.72 SS G_CDS: -6.71 Total: -138.43 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -0.06 Total: -23.22 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.96 kcal Total: -71.83 0.52 -71.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268777377.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.566 kcal (2) G-P(sol) polarization free energy of solvation -71.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds