Wall clock time and date at job start Sat Apr 11 2020 08:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13610 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47100 * 29.55380 * 3 2 1 5 5 C 1.53002 * 109.47009 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.47261 * 179.97438 * 5 4 3 7 7 O 1.21278 * 119.99799 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00082 * 179.97438 * 6 5 4 9 9 C 1.46928 * 120.60249 * 179.97438 * 8 6 5 10 10 C 1.53261 * 108.73992 * 234.12339 * 9 8 6 11 11 C 1.52506 * 109.42409 * 306.20327 * 10 9 8 12 12 C 1.54205 * 109.96499 * 181.76745 * 11 10 9 13 13 C 1.54574 * 101.66346 * 143.24632 * 12 11 10 14 14 N 1.46817 * 105.48870 * 334.96213 * 13 12 11 15 15 C 1.46500 * 124.36211 * 196.90174 * 14 13 12 16 16 C 1.53006 * 109.46998 * 89.99797 * 15 14 13 17 17 C 1.50699 * 109.46866 * 180.02562 * 16 15 14 18 18 H 1.08003 * 119.99962 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00270 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00305 * 179.97438 * 19 17 16 21 21 Si 1.86805 * 119.99832 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.46901 * 89.99815 * 21 19 17 23 23 H 1.48488 * 109.47487 * 210.00255 * 21 19 17 24 24 H 1.48503 * 109.47026 * 330.00635 * 21 19 17 25 25 C 1.34565 * 111.27675 * 17.16565 * 14 13 12 26 26 O 1.21284 * 125.02159 * 179.08718 * 25 14 13 27 27 C 1.52504 * 110.83248 * 59.97195 * 11 10 9 28 28 C 1.46934 * 120.60214 * 359.97438 * 8 6 5 29 29 H 1.08997 * 109.47131 * 269.55037 * 3 2 1 30 30 H 1.09000 * 109.46758 * 149.55404 * 3 2 1 31 31 H 1.08997 * 109.47408 * 59.99827 * 4 3 2 32 32 H 1.09000 * 109.47335 * 299.99671 * 4 3 2 33 33 H 1.08997 * 109.47008 * 59.99789 * 5 4 3 34 34 H 1.09000 * 109.46972 * 300.00100 * 5 4 3 35 35 H 1.09006 * 109.58961 * 114.34538 * 9 8 6 36 36 H 1.08994 * 109.71316 * 353.97537 * 9 8 6 37 37 H 1.08996 * 109.48490 * 186.22247 * 10 9 8 38 38 H 1.09003 * 109.47919 * 66.18458 * 10 9 8 39 39 H 1.08994 * 110.99011 * 25.15122 * 12 11 10 40 40 H 1.09006 * 110.98845 * 261.33498 * 12 11 10 41 41 H 1.09001 * 110.24224 * 215.96439 * 13 12 11 42 42 H 1.08997 * 110.32066 * 94.00455 * 13 12 11 43 43 H 1.09000 * 109.47175 * 329.99929 * 15 14 13 44 44 H 1.09001 * 109.47297 * 209.99436 * 15 14 13 45 45 H 1.08993 * 109.46955 * 300.00226 * 16 15 14 46 46 H 1.09000 * 109.47050 * 60.00054 * 16 15 14 47 47 H 0.97002 * 120.00008 * 179.97438 * 20 19 17 48 48 H 1.09002 * 109.48485 * 60.00324 * 27 11 10 49 49 H 1.09002 * 109.48254 * 180.02562 * 27 11 10 50 50 H 1.09006 * 109.59295 * 245.64313 * 28 8 6 51 51 H 1.09001 * 109.59524 * 5.94262 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.2539 -0.7115 5 6 4.6486 -1.2529 -0.7120 6 6 5.1516 -2.4890 -1.4123 7 8 4.3638 -3.2914 -1.8666 8 7 6.4767 -2.7021 -1.5346 9 6 6.9816 -3.9029 -2.2142 10 6 7.9509 -4.6293 -1.2753 11 6 9.0280 -3.6566 -0.8069 12 6 10.0361 -4.3859 0.1041 13 6 11.3669 -3.7109 -0.2991 14 7 11.1590 -3.2202 -1.6671 15 6 12.2377 -2.8328 -2.5795 16 6 12.6801 -4.0511 -3.3926 17 6 13.7902 -3.6527 -4.3307 18 1 14.1444 -2.6325 -4.3458 19 6 14.3529 -4.5903 -5.1705 20 7 15.3213 -4.2425 -5.9895 21 14 13.7398 -6.3546 -5.1449 22 1 12.6322 -6.5079 -6.1221 23 1 14.8509 -7.2702 -5.5083 24 1 13.2485 -6.6883 -3.7838 25 6 9.8496 -3.1667 -1.9729 26 8 9.3971 -2.7834 -3.0309 27 6 8.4086 -2.4797 -0.0605 28 6 7.4428 -1.7378 -0.9906 29 1 2.9714 0.0089 1.0276 30 1 2.9709 0.8868 -0.5208 31 1 2.7553 -1.2622 -1.7391 32 1 2.7557 -2.1401 -0.1907 33 1 5.0123 -1.2445 0.3154 34 1 5.0112 -0.3668 -1.2330 35 1 7.5037 -3.6142 -3.1265 36 1 6.1498 -4.5622 -2.4622 37 1 8.4170 -5.4598 -1.8054 38 1 7.4045 -5.0096 -0.4121 39 1 10.0581 -5.4536 -0.1142 40 1 9.8113 -4.2085 1.1559 41 1 12.1795 -4.4370 -0.2784 42 1 11.5876 -2.8794 0.3703 43 1 13.0822 -2.4541 -2.0037 44 1 11.8806 -2.0554 -3.2550 45 1 13.0371 -4.8285 -2.7172 46 1 11.8356 -4.4298 -3.9684 47 1 15.7175 -4.9022 -6.5800 48 1 7.8648 -2.8468 0.8099 49 1 9.1963 -1.7994 0.2633 50 1 8.0012 -1.2797 -1.8070 51 1 6.9137 -0.9662 -0.4314 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269991556.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:24:34 Heat of formation + Delta-G solvation = -55.348937 kcal Electronic energy + Delta-G solvation = -30922.761559 eV Core-core repulsion = 26821.514669 eV Total energy + Delta-G solvation = -4101.246890 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.38060 -39.85848 -37.44823 -36.95207 -36.28818 -34.72942 -34.32781 -32.83978 -31.61336 -30.85942 -29.37683 -28.69146 -26.22436 -25.16888 -23.91808 -23.27049 -22.02039 -21.73094 -20.52575 -19.55948 -18.51428 -18.06814 -17.19297 -17.00033 -16.53763 -16.14176 -15.97936 -15.61895 -15.28831 -15.03406 -14.44075 -14.33189 -14.26196 -14.19463 -13.97690 -13.66051 -13.46595 -13.24488 -13.05925 -13.03560 -12.87870 -12.69723 -12.63154 -12.37325 -12.16440 -12.08208 -12.02432 -11.89751 -11.76488 -11.51408 -11.42940 -11.23737 -11.05052 -10.83857 -10.65698 -10.49530 -10.18512 -9.94643 -9.89148 -9.44403 -9.27203 -8.63326 -8.60587 -8.26058 -6.11786 -4.11235 2.32970 2.39586 2.45213 2.78994 2.82669 3.26971 3.33961 3.34732 3.36100 3.54492 4.10755 4.13754 4.27878 4.37544 4.39036 4.45402 4.56306 4.67783 4.78442 4.79976 4.88268 4.90268 4.97696 5.04904 5.10805 5.15335 5.22509 5.27939 5.33572 5.39296 5.51521 5.56405 5.56657 5.66096 5.71964 5.74973 5.77044 5.79924 5.87349 5.92292 6.13162 6.23312 6.36410 6.51935 6.72618 7.10827 7.16886 7.24725 7.25979 7.54558 7.68946 8.00298 8.40658 8.47965 8.90870 9.50007 11.01192 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021181 B = 0.002078 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.652940 B =13471.430313 C =13735.087635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C 0.207 3.793 3 C -0.027 4.027 4 C -0.103 4.103 5 C -0.140 4.140 6 C 0.512 3.488 7 O -0.546 6.546 8 N -0.602 5.602 9 C 0.101 3.899 10 C -0.109 4.109 11 C -0.095 4.095 12 C -0.125 4.125 13 C 0.100 3.900 14 N -0.612 5.612 15 C 0.136 3.864 16 C -0.023 4.023 17 C -0.523 4.523 18 H 0.074 0.926 19 C 0.071 3.929 20 N -0.900 5.900 21 Si 0.880 3.120 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.267 1.267 25 C 0.521 3.479 26 O -0.523 6.523 27 C -0.111 4.111 28 C 0.102 3.898 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.016 0.984 46 H 0.015 0.985 47 H 0.264 0.736 48 H 0.078 0.922 49 H 0.081 0.919 50 H 0.082 0.918 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.644 6.079 19.717 26.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.116 5.116 2 C -0.111 4.111 3 C -0.067 4.067 4 C -0.142 4.142 5 C -0.180 4.180 6 C 0.300 3.700 7 O -0.424 6.424 8 N -0.335 5.335 9 C -0.021 4.021 10 C -0.148 4.148 11 C -0.098 4.098 12 C -0.163 4.163 13 C -0.024 4.024 14 N -0.345 5.345 15 C 0.016 3.984 16 C -0.061 4.061 17 C -0.561 4.561 18 H 0.092 0.908 19 C -0.131 4.131 20 N -0.538 5.538 21 Si 0.708 3.292 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.192 1.192 25 C 0.307 3.693 26 O -0.399 6.399 27 C -0.149 4.149 28 C -0.021 4.021 29 H 0.128 0.872 30 H 0.129 0.871 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.114 0.886 36 H 0.107 0.893 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.107 0.893 41 H 0.098 0.902 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.095 0.905 45 H 0.034 0.966 46 H 0.034 0.966 47 H 0.074 0.926 48 H 0.097 0.903 49 H 0.099 0.901 50 H 0.100 0.900 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -18.787 5.826 18.713 27.149 hybrid contribution 0.650 -1.026 -0.038 1.215 sum -18.137 4.800 18.675 26.472 Atomic orbital electron populations 1.81259 1.13199 1.08448 1.08697 1.29200 0.95346 0.93309 0.93263 1.19345 0.81666 1.01310 1.04356 1.21290 0.93805 0.96618 1.02464 1.21680 0.96549 0.97418 1.02354 1.20575 0.81808 0.87757 0.79826 1.90707 1.54777 1.47464 1.49437 1.48017 1.05214 1.23379 1.56880 1.21855 0.97690 0.86275 0.96310 1.21709 0.95633 0.97269 1.00139 1.21044 0.95946 0.97108 0.95749 1.22715 0.93421 1.00424 0.99764 1.22070 0.98240 0.98675 0.83420 1.48635 1.06962 1.64411 1.14502 1.21593 0.86777 0.99166 0.90844 1.19877 0.96815 0.93986 0.95459 1.20949 1.17211 0.98159 1.19823 0.90812 1.24971 0.94535 0.98798 0.94809 1.69901 1.25482 1.34771 1.23645 0.86772 0.78572 0.84982 0.78899 1.20184 1.21304 1.19222 1.20419 0.83032 0.77988 0.87851 1.90663 1.74908 1.47993 1.26374 1.21730 0.98831 0.96432 0.97931 1.21837 0.91168 0.91175 0.97886 0.87194 0.87131 0.90128 0.90195 0.88367 0.88260 0.88550 0.89284 0.90294 0.90842 0.89824 0.89312 0.90158 0.91345 0.90999 0.90494 0.96566 0.96624 0.92600 0.90338 0.90093 0.89997 0.89489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -4.78 18.54 42.16 0.78 -4.00 16 2 C 0.21 1.46 15.43 -20.76 -0.32 1.14 16 3 C -0.03 -0.06 5.70 -29.52 -0.17 -0.23 16 4 C -0.10 -0.50 4.46 -26.73 -0.12 -0.62 16 5 C -0.14 -0.64 4.04 -27.88 -0.11 -0.75 16 6 C 0.51 5.03 7.70 -10.99 -0.08 4.94 16 7 O -0.55 -7.59 15.39 5.56 0.09 -7.50 16 8 N -0.60 -6.00 2.96 -172.69 -0.51 -6.52 16 9 C 0.10 1.22 6.00 -3.67 -0.02 1.19 16 10 C -0.11 -1.12 4.80 -26.85 -0.13 -1.25 16 11 C -0.09 -0.95 0.55 -155.48 -0.09 -1.04 16 12 C -0.13 -1.03 6.20 -25.27 -0.16 -1.19 16 13 C 0.10 1.05 7.35 -3.04 -0.02 1.02 16 14 N -0.61 -9.22 2.94 -172.46 -0.51 -9.73 16 15 C 0.14 2.55 5.88 -4.04 -0.02 2.53 16 16 C -0.02 -0.54 4.37 -27.88 -0.12 -0.66 16 17 C -0.52 -14.53 9.66 -34.44 -0.33 -14.86 16 18 H 0.07 2.17 7.99 -52.48 -0.42 1.75 16 19 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 20 N -0.90 -27.31 13.96 55.43 0.77 -26.53 16 21 Si 0.88 21.64 27.47 -169.99 -4.67 16.97 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 25 C 0.52 7.75 6.24 -11.02 -0.07 7.68 16 26 O -0.52 -9.64 13.72 5.55 0.08 -9.56 16 27 C -0.11 -0.79 4.77 -26.86 -0.13 -0.92 16 28 C 0.10 0.79 5.93 -3.68 -0.02 0.77 16 29 H 0.11 0.00 8.14 -51.93 -0.42 -0.43 16 30 H 0.11 0.04 8.14 -51.93 -0.42 -0.39 16 31 H 0.08 0.54 8.10 -51.93 -0.42 0.12 16 32 H 0.08 0.50 8.10 -51.93 -0.42 0.08 16 33 H 0.10 0.20 7.71 -51.93 -0.40 -0.21 16 34 H 0.10 0.28 7.93 -51.93 -0.41 -0.13 16 35 H 0.10 1.44 5.87 -51.93 -0.30 1.13 16 36 H 0.09 1.14 7.01 -51.93 -0.36 0.78 16 37 H 0.08 0.88 8.13 -51.93 -0.42 0.45 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.71 7.88 -51.93 -0.41 0.30 16 40 H 0.09 0.49 7.87 -51.93 -0.41 0.08 16 41 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.08 1.55 7.92 -51.93 -0.41 1.14 16 45 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 46 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 47 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 48 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.08 0.85 6.82 -51.93 -0.35 0.49 16 51 H 0.09 0.36 5.92 -51.93 -0.31 0.05 16 LS Contribution 405.74 15.07 6.11 6.11 Total: -1.00 -37.55 405.74 -8.24 -45.79 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -8.37 Total: -4.72 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -2.01 Total: -0.31 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: 0.54 Total: -46.78 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: 0.16 Total: -17.07 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -37.55 -8.24 -45.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269991556.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.557 kcal (2) G-P(sol) polarization free energy of solvation -37.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds