Wall clock time and date at job start Sat Apr 11 2020 08:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13610 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47100 * 29.55380 * 3 2 1 5 5 C 1.53002 * 109.47009 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.47261 * 179.97438 * 5 4 3 7 7 O 1.21278 * 119.99799 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00082 * 179.97438 * 6 5 4 9 9 C 1.46928 * 120.60249 * 179.97438 * 8 6 5 10 10 C 1.53261 * 108.73992 * 234.12339 * 9 8 6 11 11 C 1.52506 * 109.42409 * 306.20327 * 10 9 8 12 12 C 1.54205 * 109.96499 * 181.76745 * 11 10 9 13 13 C 1.54574 * 101.66346 * 143.24632 * 12 11 10 14 14 N 1.46817 * 105.48870 * 334.96213 * 13 12 11 15 15 C 1.46500 * 124.36211 * 196.90174 * 14 13 12 16 16 C 1.53006 * 109.46998 * 89.99797 * 15 14 13 17 17 C 1.50699 * 109.46866 * 180.02562 * 16 15 14 18 18 H 1.08003 * 119.99962 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00270 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00305 * 179.97438 * 19 17 16 21 21 Si 1.86805 * 119.99832 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.46901 * 89.99815 * 21 19 17 23 23 H 1.48488 * 109.47487 * 210.00255 * 21 19 17 24 24 H 1.48503 * 109.47026 * 330.00635 * 21 19 17 25 25 C 1.34565 * 111.27675 * 17.16565 * 14 13 12 26 26 O 1.21284 * 125.02159 * 179.08718 * 25 14 13 27 27 C 1.52504 * 110.83248 * 59.97195 * 11 10 9 28 28 C 1.46934 * 120.60214 * 359.97438 * 8 6 5 29 29 H 1.08997 * 109.47131 * 269.55037 * 3 2 1 30 30 H 1.09000 * 109.46758 * 149.55404 * 3 2 1 31 31 H 1.08997 * 109.47408 * 59.99827 * 4 3 2 32 32 H 1.09000 * 109.47335 * 299.99671 * 4 3 2 33 33 H 1.08997 * 109.47008 * 59.99789 * 5 4 3 34 34 H 1.09000 * 109.46972 * 300.00100 * 5 4 3 35 35 H 1.09006 * 109.58961 * 114.34538 * 9 8 6 36 36 H 1.08994 * 109.71316 * 353.97537 * 9 8 6 37 37 H 1.08996 * 109.48490 * 186.22247 * 10 9 8 38 38 H 1.09003 * 109.47919 * 66.18458 * 10 9 8 39 39 H 1.08994 * 110.99011 * 25.15122 * 12 11 10 40 40 H 1.09006 * 110.98845 * 261.33498 * 12 11 10 41 41 H 1.09001 * 110.24224 * 215.96439 * 13 12 11 42 42 H 1.08997 * 110.32066 * 94.00455 * 13 12 11 43 43 H 1.09000 * 109.47175 * 329.99929 * 15 14 13 44 44 H 1.09001 * 109.47297 * 209.99436 * 15 14 13 45 45 H 1.08993 * 109.46955 * 300.00226 * 16 15 14 46 46 H 1.09000 * 109.47050 * 60.00054 * 16 15 14 47 47 H 0.97002 * 120.00008 * 179.97438 * 20 19 17 48 48 H 1.09002 * 109.48485 * 60.00324 * 27 11 10 49 49 H 1.09002 * 109.48254 * 180.02562 * 27 11 10 50 50 H 1.09006 * 109.59295 * 245.64313 * 28 8 6 51 51 H 1.09001 * 109.59524 * 5.94262 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.2539 -0.7115 5 6 4.6486 -1.2529 -0.7120 6 6 5.1516 -2.4890 -1.4123 7 8 4.3638 -3.2914 -1.8666 8 7 6.4767 -2.7021 -1.5346 9 6 6.9816 -3.9029 -2.2142 10 6 7.9509 -4.6293 -1.2753 11 6 9.0280 -3.6566 -0.8069 12 6 10.0361 -4.3859 0.1041 13 6 11.3669 -3.7109 -0.2991 14 7 11.1590 -3.2202 -1.6671 15 6 12.2377 -2.8328 -2.5795 16 6 12.6801 -4.0511 -3.3926 17 6 13.7902 -3.6527 -4.3307 18 1 14.1444 -2.6325 -4.3458 19 6 14.3529 -4.5903 -5.1705 20 7 15.3213 -4.2425 -5.9895 21 14 13.7398 -6.3546 -5.1449 22 1 12.6322 -6.5079 -6.1221 23 1 14.8509 -7.2702 -5.5083 24 1 13.2485 -6.6883 -3.7838 25 6 9.8496 -3.1667 -1.9729 26 8 9.3971 -2.7834 -3.0309 27 6 8.4086 -2.4797 -0.0605 28 6 7.4428 -1.7378 -0.9906 29 1 2.9714 0.0089 1.0276 30 1 2.9709 0.8868 -0.5208 31 1 2.7553 -1.2622 -1.7391 32 1 2.7557 -2.1401 -0.1907 33 1 5.0123 -1.2445 0.3154 34 1 5.0112 -0.3668 -1.2330 35 1 7.5037 -3.6142 -3.1265 36 1 6.1498 -4.5622 -2.4622 37 1 8.4170 -5.4598 -1.8054 38 1 7.4045 -5.0096 -0.4121 39 1 10.0581 -5.4536 -0.1142 40 1 9.8113 -4.2085 1.1559 41 1 12.1795 -4.4370 -0.2784 42 1 11.5876 -2.8794 0.3703 43 1 13.0822 -2.4541 -2.0037 44 1 11.8806 -2.0554 -3.2550 45 1 13.0371 -4.8285 -2.7172 46 1 11.8356 -4.4298 -3.9684 47 1 15.7175 -4.9022 -6.5800 48 1 7.8648 -2.8468 0.8099 49 1 9.1963 -1.7994 0.2633 50 1 8.0012 -1.2797 -1.8070 51 1 6.9137 -0.9662 -0.4314 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269991556.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:24:33 Heat of formation + Delta-G solvation = -80.987829 kcal Electronic energy + Delta-G solvation = -30923.873344 eV Core-core repulsion = 26821.514669 eV Total energy + Delta-G solvation = -4102.358676 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.27795 -40.67319 -38.11542 -37.76010 -37.45690 -35.77561 -35.21745 -34.46353 -32.62041 -32.05609 -30.23768 -29.42075 -27.30663 -26.56769 -24.57671 -23.95615 -23.20241 -22.64578 -21.76155 -20.37154 -19.45104 -19.03809 -18.67960 -17.76489 -17.27803 -17.02319 -16.77729 -16.63064 -16.37660 -16.01462 -15.84306 -15.26710 -15.01402 -14.90296 -14.80522 -14.64129 -14.59789 -14.40957 -14.32477 -14.03369 -13.80649 -13.64071 -13.47293 -13.34971 -13.20052 -13.01544 -12.85304 -12.55438 -12.47985 -12.41670 -12.27935 -12.16754 -12.09451 -12.01513 -11.77642 -11.53474 -11.52108 -11.50636 -11.41219 -10.83223 -10.72241 -10.43905 -9.51044 -9.47837 -8.35036 -6.39525 1.29635 1.31644 1.41943 1.68730 1.75395 1.80469 1.90263 2.13883 2.22813 2.29848 3.00311 3.18126 3.31086 3.49100 3.65812 3.73640 4.01618 4.06032 4.13731 4.19012 4.22817 4.30866 4.36558 4.44639 4.45803 4.55319 4.61142 4.63919 4.73059 4.77242 4.78293 4.81341 4.82128 4.87000 4.90204 4.93713 5.05511 5.08963 5.13048 5.16880 5.25790 5.26648 5.29381 5.34396 5.42197 5.50561 5.60791 5.78686 6.19384 6.38300 6.57762 6.67395 6.69822 7.24808 7.29114 7.33147 8.81115 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021181 B = 0.002078 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.652940 B =13471.430313 C =13735.087635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C 0.234 3.766 3 C -0.017 4.017 4 C -0.100 4.100 5 C -0.129 4.129 6 C 0.502 3.498 7 O -0.599 6.599 8 N -0.603 5.603 9 C 0.101 3.899 10 C -0.103 4.103 11 C -0.086 4.086 12 C -0.113 4.113 13 C 0.091 3.909 14 N -0.621 5.621 15 C 0.148 3.852 16 C -0.013 4.013 17 C -0.532 4.532 18 H 0.041 0.959 19 C 0.011 3.989 20 N -0.944 5.944 21 Si 0.945 3.055 22 H -0.279 1.279 23 H -0.277 1.277 24 H -0.246 1.246 25 C 0.507 3.493 26 O -0.571 6.571 27 C -0.107 4.107 28 C 0.098 3.902 29 H 0.151 0.849 30 H 0.144 0.856 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.143 0.857 34 H 0.126 0.874 35 H 0.057 0.943 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.100 0.900 39 H 0.080 0.920 40 H 0.134 0.866 41 H 0.076 0.924 42 H 0.100 0.900 43 H 0.088 0.912 44 H 0.051 0.949 45 H 0.027 0.973 46 H -0.005 1.005 47 H 0.268 0.732 48 H 0.115 0.885 49 H 0.098 0.902 50 H 0.048 0.952 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.888 6.394 24.508 30.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.197 5.197 2 C -0.082 4.082 3 C -0.056 4.056 4 C -0.139 4.139 5 C -0.169 4.169 6 C 0.293 3.707 7 O -0.480 6.480 8 N -0.334 5.334 9 C -0.022 4.022 10 C -0.141 4.141 11 C -0.090 4.090 12 C -0.150 4.150 13 C -0.031 4.031 14 N -0.353 5.353 15 C 0.026 3.974 16 C -0.052 4.052 17 C -0.570 4.570 18 H 0.059 0.941 19 C -0.187 4.187 20 N -0.585 5.585 21 Si 0.769 3.231 22 H -0.205 1.205 23 H -0.202 1.202 24 H -0.170 1.170 25 C 0.296 3.704 26 O -0.451 6.451 27 C -0.145 4.145 28 C -0.024 4.024 29 H 0.169 0.831 30 H 0.161 0.839 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.161 0.839 34 H 0.144 0.856 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.118 0.882 39 H 0.099 0.901 40 H 0.152 0.848 41 H 0.095 0.905 42 H 0.118 0.882 43 H 0.106 0.894 44 H 0.069 0.931 45 H 0.045 0.955 46 H 0.014 0.986 47 H 0.076 0.924 48 H 0.133 0.867 49 H 0.117 0.883 50 H 0.066 0.934 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -19.013 6.154 23.566 30.899 hybrid contribution 0.798 -1.060 -1.645 2.113 sum -18.215 5.094 21.921 28.953 Atomic orbital electron populations 1.81281 1.15855 1.11060 1.11535 1.30141 0.96252 0.90981 0.90867 1.19657 0.78201 1.00965 1.06825 1.21188 0.94451 0.97318 1.00963 1.21768 0.95660 0.95082 1.04341 1.21641 0.81112 0.88775 0.79171 1.90689 1.55968 1.49674 1.51713 1.48129 1.05980 1.22901 1.56434 1.21563 0.97122 0.87498 0.96008 1.21666 0.95416 0.96687 1.00342 1.21078 0.95438 0.98389 0.94072 1.22796 0.90842 0.99728 1.01641 1.22443 0.99604 0.99940 0.81078 1.48706 1.06165 1.64538 1.15867 1.21100 0.88567 0.96425 0.91264 1.19731 0.94372 0.96082 0.95002 1.21307 1.18181 0.96823 1.20737 0.94088 1.25895 0.94699 1.03592 0.94468 1.70038 1.27092 1.36491 1.24835 0.85737 0.78038 0.79484 0.79826 1.20497 1.20229 1.16979 1.21445 0.83419 0.76974 0.88606 1.90645 1.75785 1.49792 1.28835 1.21846 0.99237 0.95274 0.98140 1.22057 0.91222 0.91711 0.97431 0.83096 0.83881 0.92981 0.91979 0.83930 0.85608 0.92512 0.91157 0.91956 0.88152 0.90090 0.84764 0.90513 0.88204 0.89405 0.93066 0.95473 0.98626 0.92352 0.86680 0.88337 0.93402 0.84630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -11.34 18.54 20.01 0.37 -10.97 16 2 C 0.23 2.92 15.43 89.44 1.38 4.30 16 3 C -0.02 -0.01 5.70 28.79 0.16 0.16 16 4 C -0.10 -0.72 4.46 30.60 0.14 -0.59 16 5 C -0.13 -0.60 4.04 29.85 0.12 -0.48 16 6 C 0.50 9.02 7.70 87.66 0.67 9.69 16 7 O -0.60 -16.99 15.39 -3.02 -0.05 -17.04 16 8 N -0.60 -11.06 2.96 -818.65 -2.43 -13.48 16 9 C 0.10 2.53 6.00 86.39 0.52 3.05 16 10 C -0.10 -1.97 4.80 30.52 0.15 -1.82 16 11 C -0.09 -1.47 0.55 -52.81 -0.03 -1.50 16 12 C -0.11 -1.31 6.20 31.54 0.20 -1.12 16 13 C 0.09 1.57 7.35 86.85 0.64 2.21 16 14 N -0.62 -17.93 2.94 -818.05 -2.40 -20.33 16 15 C 0.15 5.63 5.88 86.38 0.51 6.14 16 16 C -0.01 -0.63 4.37 29.85 0.13 -0.50 16 17 C -0.53 -30.54 9.66 25.60 0.25 -30.29 16 18 H 0.04 2.54 7.99 -2.91 -0.02 2.52 16 19 C 0.01 0.66 5.47 84.65 0.46 1.12 16 20 N -0.94 -59.02 13.96 21.45 0.30 -58.72 16 21 Si 0.95 45.00 27.47 68.60 1.88 46.88 16 22 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 23 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 24 H -0.25 -10.77 6.54 99.48 0.65 -10.12 16 25 C 0.51 14.83 6.24 87.73 0.55 15.38 16 26 O -0.57 -22.13 13.72 -3.04 -0.04 -22.18 16 27 C -0.11 -0.97 4.77 30.51 0.15 -0.82 16 28 C 0.10 1.17 5.93 86.38 0.51 1.68 16 29 H 0.15 -1.00 8.14 -2.39 -0.02 -1.02 16 30 H 0.14 -0.71 8.14 -2.39 -0.02 -0.73 16 31 H 0.05 0.68 8.10 -2.39 -0.02 0.66 16 32 H 0.06 0.68 8.10 -2.39 -0.02 0.67 16 33 H 0.14 -0.51 7.71 -2.39 -0.02 -0.53 16 34 H 0.13 0.02 7.93 -2.39 -0.02 0.00 16 35 H 0.06 1.86 5.87 -2.38 -0.01 1.85 16 36 H 0.07 1.95 7.01 -2.39 -0.02 1.94 16 37 H 0.06 1.37 8.13 -2.39 -0.02 1.35 16 38 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.08 1.03 7.88 -2.39 -0.02 1.01 16 40 H 0.13 0.45 7.87 -2.38 -0.02 0.43 16 41 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 44 H 0.05 2.17 7.92 -2.39 -0.02 2.15 16 45 H 0.03 1.21 7.20 -2.39 -0.02 1.19 16 46 H 0.00 -0.24 7.57 -2.39 -0.02 -0.26 16 47 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 48 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 49 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 50 H 0.05 0.93 6.82 -2.38 -0.02 0.92 16 51 H 0.14 0.26 5.92 -2.39 -0.01 0.25 16 Total: -1.00 -93.91 405.74 5.00 -88.91 By element: Atomic # 1 Polarization: -0.54 SS G_CDS: 0.87 Total: 0.33 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: 6.50 Total: 6.60 kcal Atomic # 7 Polarization: -99.34 SS G_CDS: -4.16 Total: -103.50 kcal Atomic # 8 Polarization: -39.12 SS G_CDS: -0.09 Total: -39.21 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.88 Total: 46.88 kcal Total: -93.91 5.00 -88.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269991556.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.922 kcal (2) G-P(sol) polarization free energy of solvation -93.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds