Wall clock time and date at job start Sat Apr 11 2020 08:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 120.00320 * 2 1 4 4 H 1.48491 * 109.47217 * 270.00280 * 3 2 1 5 5 H 1.48503 * 109.46839 * 30.00124 * 3 2 1 6 6 H 1.48501 * 109.47099 * 149.99708 * 3 2 1 7 7 C 1.38815 * 119.99814 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99538 * 0.02562 * 7 2 1 9 9 N 1.36935 * 119.99844 * 180.02562 * 7 2 1 10 10 C 1.46499 * 119.99658 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47181 * 179.97438 * 10 9 7 12 12 H 1.09003 * 109.47420 * 295.00137 * 11 10 9 13 13 N 1.46504 * 109.47153 * 54.99945 * 11 10 9 14 14 C 1.34777 * 120.00368 * 235.26606 * 13 11 10 15 15 O 1.21275 * 119.99819 * 5.02690 * 14 13 11 16 16 C 1.50694 * 120.00057 * 185.02678 * 14 13 11 17 17 C 1.52998 * 109.47052 * 180.02562 * 16 14 13 18 18 C 1.50706 * 109.46878 * 180.02562 * 17 16 14 19 19 C 1.38828 * 120.35815 * 89.99959 * 18 17 16 20 20 C 1.38379 * 118.48099 * 179.97438 * 19 18 17 21 21 C 1.38915 * 119.11638 * 0.02562 * 20 19 18 22 22 O 1.35673 * 119.68472 * 180.02562 * 21 20 19 23 23 N 1.32246 * 120.62721 * 0.02562 * 21 20 19 24 24 C 1.31960 * 121.65051 * 359.68108 * 23 21 20 25 25 C 1.53004 * 109.47506 * 175.00165 * 11 10 9 26 26 C 1.54270 * 110.02680 * 295.37752 * 25 11 10 27 27 C 1.54888 * 104.19301 * 217.10175 * 26 25 11 28 28 C 1.54896 * 102.74921 * 37.94416 * 27 26 25 29 29 C 1.53872 * 110.03206 * 178.21252 * 25 11 10 30 30 H 0.97002 * 119.99699 * 359.97438 * 1 2 3 31 31 H 0.96996 * 120.00206 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.47271 * 299.99894 * 10 9 7 33 33 H 1.09007 * 109.47193 * 60.00143 * 10 9 7 34 34 H 0.97003 * 119.99573 * 55.26534 * 13 11 10 35 35 H 1.09010 * 109.47245 * 300.00327 * 16 14 13 36 36 H 1.08999 * 109.47310 * 59.99656 * 16 14 13 37 37 H 1.09005 * 109.46825 * 299.99780 * 17 16 14 38 38 H 1.08993 * 109.47259 * 59.99839 * 17 16 14 39 39 H 1.07999 * 120.75843 * 359.97438 * 19 18 17 40 40 H 1.08002 * 120.43851 * 179.97438 * 20 19 18 41 41 H 0.96700 * 114.00029 * 89.99717 * 22 21 20 42 42 H 1.08009 * 119.58578 * 180.30978 * 24 23 21 43 43 H 1.08997 * 110.01516 * 56.81196 * 25 11 10 44 44 H 1.09000 * 110.49245 * 335.77978 * 26 25 11 45 45 H 1.08996 * 110.48711 * 98.42967 * 26 25 11 46 46 H 1.09002 * 110.75870 * 279.62997 * 27 26 25 47 47 H 1.09006 * 110.91516 * 156.33270 * 27 26 25 48 48 H 1.08996 * 110.48453 * 203.37521 * 28 27 26 49 49 H 1.09004 * 110.59778 * 80.78968 * 28 27 26 50 50 H 1.09001 * 110.02689 * 238.56724 * 29 25 11 51 51 H 1.09002 * 110.03630 * 359.97438 * 29 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1375 -0.0014 9 7 3.3796 -1.2022 0.0000 10 6 4.1120 -2.4710 0.0000 11 6 5.6162 -2.1915 0.0000 12 1 5.8942 -1.6981 -0.9314 13 7 5.9516 -1.3234 1.1314 14 6 6.6021 -0.1620 0.9202 15 8 6.8291 0.2086 -0.2120 16 6 7.0473 0.6760 2.0908 17 6 7.7552 1.9321 1.5789 18 6 8.2010 2.7698 2.7497 19 6 9.4551 2.5774 3.3130 20 6 9.8248 3.3686 4.3864 21 6 8.9338 4.3226 4.8615 22 8 9.2845 5.1049 5.9130 23 7 7.7469 4.4754 4.2987 24 6 7.3683 3.7399 3.2705 25 6 6.3802 -3.5112 0.1257 26 6 6.0851 -4.1645 1.4917 27 6 7.4352 -4.7985 1.9091 28 6 8.4689 -3.7523 1.4230 29 6 7.8958 -3.2490 0.0821 30 1 -0.4850 0.8401 0.0004 31 1 3.8646 -0.3622 0.0004 32 1 3.8483 -3.0428 0.8898 33 1 3.8490 -3.0424 -0.8903 34 1 5.7055 -1.5845 2.0327 35 1 6.1784 0.9646 2.6824 36 1 7.7334 0.0989 2.7108 37 1 8.6240 1.6437 0.9872 38 1 7.0688 2.5090 0.9593 39 1 10.1269 1.8274 2.9225 40 1 10.7929 3.2455 4.8491 41 1 9.7269 5.9271 5.6612 42 1 6.3931 3.8963 2.8333 43 1 6.0945 -4.1860 -0.6812 44 1 5.7772 -3.4109 2.2165 45 1 5.3185 -4.9325 1.3895 46 1 7.5858 -5.7533 1.4053 47 1 7.4895 -4.9214 2.9908 48 1 9.4418 -4.2195 1.2708 49 1 8.5482 -2.9316 2.1360 50 1 8.3458 -3.7973 -0.7456 51 1 8.0871 -2.1817 -0.0291 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270432433.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:24:41 Heat of formation + Delta-G solvation = -74.962411 kcal Electronic energy + Delta-G solvation = -30994.142644 eV Core-core repulsion = 26892.045250 eV Total energy + Delta-G solvation = -4102.097394 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.57821 -41.17741 -39.21800 -38.22342 -36.94730 -35.17959 -35.06294 -33.39414 -33.05990 -31.56329 -30.08961 -29.57636 -27.97524 -26.02483 -24.74248 -24.66347 -23.08944 -22.66021 -21.69716 -20.92661 -20.39420 -19.80081 -19.70154 -18.25355 -17.98033 -17.16566 -17.01180 -16.88545 -16.57489 -16.17570 -16.10060 -15.58042 -15.55398 -15.26810 -14.90908 -14.82767 -14.37700 -14.29214 -14.14689 -14.11051 -13.89313 -13.77146 -13.38959 -13.15423 -13.02335 -12.88283 -12.87820 -12.59615 -12.17284 -12.04359 -11.94650 -11.87850 -11.83079 -11.74511 -11.50850 -11.41762 -11.34228 -11.07670 -10.91474 -10.76371 -10.42011 -9.93100 -9.76865 -9.31000 -8.06356 -5.37707 -0.04405 0.23224 1.30306 1.35606 1.40544 1.71535 2.26665 2.42909 2.52838 2.82271 3.26054 3.45098 3.60677 3.72498 3.74103 3.83947 3.88430 3.96544 3.98998 4.01995 4.17705 4.24151 4.28386 4.39666 4.49567 4.54970 4.62596 4.64616 4.72407 4.73230 4.80016 4.88891 4.90829 4.92094 4.93252 5.00032 5.08632 5.14459 5.16469 5.19070 5.30787 5.33136 5.41939 5.50107 5.56917 5.58055 5.66158 5.74232 6.18222 6.61427 6.62274 6.92316 7.05144 7.33487 7.82722 8.00242 9.15192 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007316 B = 0.003640 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3826.215528 B = 7689.617966 C =10776.415278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.058 4.058 3 Si 0.947 3.053 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.256 1.256 7 C -0.228 4.228 8 H 0.062 0.938 9 N -0.755 5.755 10 C 0.143 3.857 11 C 0.146 3.854 12 H 0.075 0.925 13 N -0.705 5.705 14 C 0.510 3.490 15 O -0.583 6.583 16 C -0.131 4.131 17 C -0.053 4.053 18 C -0.137 4.137 19 C -0.049 4.049 20 C -0.176 4.176 21 C 0.286 3.714 22 O -0.496 6.496 23 N -0.537 5.537 24 C 0.110 3.890 25 C -0.092 4.092 26 C -0.118 4.118 27 C -0.117 4.117 28 C -0.115 4.115 29 C -0.114 4.114 30 H 0.257 0.743 31 H 0.363 0.637 32 H 0.043 0.957 33 H 0.031 0.969 34 H 0.410 0.590 35 H 0.096 0.904 36 H 0.126 0.874 37 H 0.091 0.909 38 H 0.065 0.935 39 H 0.171 0.829 40 H 0.168 0.832 41 H 0.418 0.582 42 H 0.157 0.843 43 H 0.084 0.916 44 H 0.065 0.935 45 H 0.066 0.934 46 H 0.069 0.931 47 H 0.074 0.926 48 H 0.070 0.930 49 H 0.066 0.934 50 H 0.064 0.936 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.203 -1.762 9.418 29.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.250 4.250 3 Si 0.775 3.225 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.181 1.181 7 C -0.359 4.359 8 H 0.080 0.920 9 N -0.400 5.400 10 C 0.017 3.983 11 C 0.040 3.960 12 H 0.094 0.906 13 N -0.356 5.356 14 C 0.298 3.702 15 O -0.463 6.463 16 C -0.171 4.171 17 C -0.092 4.092 18 C -0.139 4.139 19 C -0.074 4.074 20 C -0.197 4.197 21 C 0.108 3.892 22 O -0.306 6.306 23 N -0.256 5.256 24 C -0.046 4.046 25 C -0.112 4.112 26 C -0.156 4.156 27 C -0.155 4.155 28 C -0.153 4.153 29 C -0.152 4.152 30 H 0.066 0.934 31 H 0.196 0.804 32 H 0.061 0.939 33 H 0.049 0.951 34 H 0.247 0.753 35 H 0.114 0.886 36 H 0.144 0.856 37 H 0.109 0.891 38 H 0.084 0.916 39 H 0.188 0.812 40 H 0.186 0.814 41 H 0.279 0.721 42 H 0.175 0.825 43 H 0.102 0.898 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.088 0.912 47 H 0.093 0.907 48 H 0.089 0.911 49 H 0.084 0.916 50 H 0.083 0.917 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 27.415 -1.401 9.344 28.997 hybrid contribution -0.027 1.041 -0.487 1.150 sum 27.388 -0.360 8.856 28.786 Atomic orbital electron populations 1.69855 1.06828 1.26489 1.59971 1.25357 0.95956 1.00629 1.03052 0.85535 0.78581 0.80705 0.77669 1.21685 1.21846 1.18121 1.19064 0.82670 0.93480 1.40665 0.91955 1.42678 1.02399 1.04138 1.90824 1.21209 0.90202 0.87604 0.99334 1.21138 0.92847 0.91521 0.90451 0.90634 1.45888 1.57938 1.20814 1.10985 1.21140 0.76787 0.81173 0.91106 1.90684 1.58135 1.71492 1.26004 1.21697 1.03032 0.96236 0.96127 1.20147 1.01383 0.93718 0.93916 1.20870 0.95914 0.98087 0.99069 1.21791 0.95004 0.97416 0.93212 1.22362 1.01763 0.97697 0.97850 1.19541 0.89001 0.93070 0.87631 1.84734 1.79957 1.37259 1.28641 1.67132 1.18910 1.29023 1.10519 1.22600 0.99950 0.91356 0.90697 1.22055 0.95318 0.94315 0.99543 1.22417 0.98210 0.99547 0.95439 1.22458 0.93689 0.98235 1.01102 1.22297 0.98547 0.98542 0.95914 1.22101 0.93843 1.00561 0.98689 0.93366 0.80427 0.93937 0.95097 0.75330 0.88591 0.85562 0.89069 0.91625 0.81150 0.81444 0.72126 0.82550 0.89760 0.91598 0.91511 0.91196 0.90724 0.91087 0.91573 0.91693 0.93213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.61 13.97 21.65 0.30 -63.31 16 2 C -0.06 -3.50 5.50 84.86 0.47 -3.03 16 3 Si 0.95 47.74 27.74 68.60 1.90 49.64 16 4 H -0.29 -14.82 7.11 99.48 0.71 -14.11 16 5 H -0.29 -14.67 7.11 99.48 0.71 -13.97 16 6 H -0.26 -11.80 6.52 99.48 0.65 -11.15 16 7 C -0.23 -13.08 10.47 84.03 0.88 -12.20 16 8 H 0.06 3.86 8.06 -2.91 -0.02 3.84 16 9 N -0.75 -35.52 5.24 -343.44 -1.80 -37.31 16 10 C 0.14 5.19 5.85 86.38 0.51 5.70 16 11 C 0.15 4.16 2.03 44.99 0.09 4.25 16 12 H 0.08 2.58 6.91 -2.39 -0.02 2.57 16 13 N -0.70 -17.85 3.67 -442.53 -1.62 -19.48 16 14 C 0.51 13.73 7.00 87.65 0.61 14.35 16 15 O -0.58 -20.33 15.30 -3.02 -0.05 -20.38 16 16 C -0.13 -2.48 5.68 29.85 0.17 -2.31 16 17 C -0.05 -1.01 4.66 29.85 0.14 -0.87 16 18 C -0.14 -2.41 5.15 -19.77 -0.10 -2.51 16 19 C -0.05 -0.63 9.85 22.44 0.22 -0.41 16 20 C -0.18 -2.41 10.04 22.47 0.23 -2.18 16 21 C 0.29 5.64 7.74 84.79 0.66 6.29 16 22 O -0.50 -8.39 13.56 -89.90 -1.22 -9.60 16 23 N -0.54 -13.20 10.39 -308.96 -3.21 -16.41 16 24 C 0.11 2.42 10.85 84.63 0.92 3.34 16 25 C -0.09 -1.95 2.80 -10.07 -0.03 -1.98 16 26 C -0.12 -2.12 5.18 31.67 0.16 -1.95 16 27 C -0.12 -1.63 6.91 31.89 0.22 -1.41 16 28 C -0.12 -1.64 6.83 31.67 0.22 -1.43 16 29 C -0.11 -2.14 6.21 31.32 0.19 -1.95 16 30 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 31 H 0.36 17.13 5.17 -92.71 -0.48 16.65 16 32 H 0.04 1.47 7.24 -2.39 -0.02 1.45 16 33 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 34 H 0.41 8.74 7.15 -92.71 -0.66 8.08 16 35 H 0.10 1.87 8.14 -2.38 -0.02 1.85 16 36 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.09 1.62 8.05 -2.38 -0.02 1.60 16 38 H 0.07 1.54 8.05 -2.39 -0.02 1.52 16 39 H 0.17 1.14 8.06 -2.91 -0.02 1.11 16 40 H 0.17 1.30 8.06 -2.91 -0.02 1.28 16 41 H 0.42 2.77 9.06 -74.06 -0.67 2.10 16 42 H 0.16 3.35 8.06 -2.91 -0.02 3.32 16 43 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.07 1.19 6.04 -2.39 -0.01 1.17 16 45 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 47 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 48 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 49 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 50 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 51 H 0.05 1.12 6.70 -2.39 -0.02 1.11 16 Total: -1.00 -80.22 409.70 -1.05 -81.27 By element: Atomic # 1 Polarization: 34.78 SS G_CDS: -0.91 Total: 33.87 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: 5.55 Total: 1.70 kcal Atomic # 7 Polarization: -130.18 SS G_CDS: -6.33 Total: -136.50 kcal Atomic # 8 Polarization: -28.72 SS G_CDS: -1.27 Total: -29.98 kcal Atomic # 14 Polarization: 47.74 SS G_CDS: 1.90 Total: 49.64 kcal Total: -80.22 -1.05 -81.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270432433.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.307 kcal (2) G-P(sol) polarization free energy of solvation -80.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds