Wall clock time and date at job start Sat Apr 11 2020 08:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00079 * 2 1 4 4 H 1.48497 * 109.47089 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46812 * 299.99719 * 3 2 1 6 6 H 1.48494 * 109.47067 * 59.99525 * 3 2 1 7 7 C 1.37883 * 119.99795 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99565 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00209 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47231 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.47245 * 179.97438 * 10 9 7 12 12 C 1.34775 * 119.99941 * 180.02562 * 11 10 9 13 13 O 1.21274 * 120.00359 * 0.02562 * 12 11 10 14 14 C 1.50701 * 119.99765 * 180.02562 * 12 11 10 15 15 H 1.08999 * 115.55211 * 61.73502 * 14 12 11 16 16 C 1.53029 * 117.50065 * 207.42128 * 14 12 11 17 17 C 1.52818 * 117.50152 * 276.04801 * 14 12 11 18 18 C 1.53187 * 117.71240 * 144.89999 * 17 14 12 19 19 C 1.53354 * 108.76936 * 158.88834 * 18 17 14 20 20 N 1.46845 * 108.81385 * 51.31001 * 19 18 17 21 21 C 1.34771 * 120.38653 * 123.11983 * 20 19 18 22 22 O 1.21277 * 120.00188 * 179.97438 * 21 20 19 23 23 C 1.50703 * 120.00005 * 359.97153 * 21 20 19 24 24 H 1.09004 * 110.28770 * 317.87935 * 23 21 20 25 25 C 1.54685 * 110.31787 * 80.00244 * 23 21 20 26 26 C 1.54832 * 100.79674 * 142.85683 * 25 23 21 27 27 C 1.51260 * 103.78014 * 336.47157 * 26 25 23 28 28 N 1.27263 * 111.24472 * 15.92330 * 27 26 25 29 29 C 1.46849 * 119.23126 * 303.09573 * 20 19 18 30 30 C 1.53179 * 117.71355 * 0.14188 * 17 14 12 31 31 H 0.97000 * 120.00108 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.46921 * 59.99961 * 9 7 2 33 33 H 1.09003 * 109.47432 * 300.00511 * 9 7 2 34 34 H 1.09001 * 109.46780 * 60.00733 * 10 9 7 35 35 H 1.08996 * 109.47533 * 300.00326 * 10 9 7 36 36 H 0.97004 * 120.00059 * 0.02562 * 11 10 9 37 37 H 1.09004 * 117.50198 * 214.95381 * 16 14 12 38 38 H 1.09004 * 117.50550 * 0.02562 * 16 14 12 39 39 H 1.08996 * 109.58891 * 278.67867 * 18 17 14 40 40 H 1.09003 * 109.58573 * 39.11065 * 18 17 14 41 41 H 1.08994 * 109.58282 * 291.51213 * 19 18 17 42 42 H 1.08997 * 109.58146 * 171.10461 * 19 18 17 43 43 H 1.08998 * 111.15253 * 260.74058 * 25 23 21 44 44 H 1.08993 * 111.15679 * 24.93287 * 25 23 21 45 45 H 1.08999 * 110.56242 * 95.04169 * 26 25 23 46 46 H 1.08997 * 110.56190 * 217.89470 * 26 25 23 47 47 H 1.08005 * 124.37575 * 195.95298 * 27 26 25 48 48 H 1.08999 * 109.58138 * 297.11136 * 29 20 19 49 49 H 1.08997 * 109.58298 * 176.70543 * 29 20 19 50 50 H 1.09002 * 109.58871 * 320.89331 * 30 17 14 51 51 H 1.08998 * 109.59065 * 81.18323 * 30 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8903 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 7 1.5128 -4.9308 0.0045 12 6 2.1867 -6.0980 0.0062 13 8 3.3994 -6.0981 0.0067 14 6 1.4331 -7.4031 0.0074 15 1 0.7951 -7.5784 -0.8588 16 6 2.1229 -8.6168 0.6342 17 6 0.9560 -7.9412 1.3558 18 6 -0.3831 -8.6843 1.3928 19 6 -0.4223 -9.5685 2.6452 20 7 -0.0778 -8.7493 3.8142 21 6 -0.9266 -8.6586 4.8571 22 8 -0.6347 -7.9804 5.8192 23 6 -2.2383 -9.3998 4.8277 24 1 -2.6973 -9.3170 3.8425 25 6 -2.0236 -10.8865 5.1970 26 6 -3.3043 -11.1689 6.0200 27 6 -3.7262 -9.8016 6.5104 28 7 -3.1422 -8.8775 5.8588 29 6 1.2026 -8.0304 3.8339 30 6 1.2747 -7.1150 2.6056 31 1 -0.4850 0.8400 -0.0004 32 1 0.6241 -2.5575 -0.8880 33 1 0.6246 -2.5564 0.8919 34 1 2.8718 -3.6036 0.8928 35 1 2.8720 -3.6052 -0.8872 36 1 0.5427 -4.9309 0.0044 37 1 1.9383 -9.5906 0.1807 38 1 3.1216 -8.4712 1.0461 39 1 -1.2000 -7.9637 1.4284 40 1 -0.4804 -9.3065 0.5031 41 1 0.2984 -10.3796 2.5424 42 1 -1.4236 -9.9805 2.7702 43 1 -1.9835 -11.5116 4.3050 44 1 -1.1282 -11.0154 5.8050 45 1 -4.0778 -11.6041 5.3873 46 1 -3.0819 -11.8255 6.8611 47 1 -4.4315 -9.6316 7.3105 48 1 2.0240 -8.7464 3.8046 49 1 1.2707 -7.4303 4.7412 50 1 2.2774 -6.6959 2.5208 51 1 0.5486 -6.3082 2.7054 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271516570.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:25:03 Heat of formation + Delta-G solvation = -29.195999 kcal Electronic energy + Delta-G solvation = -30542.845508 eV Core-core repulsion = 26442.732695 eV Total energy + Delta-G solvation = -4100.112814 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.08942 -40.10337 -38.81979 -37.70474 -35.53717 -34.78807 -32.81219 -32.02511 -30.96801 -30.37490 -29.63687 -29.07509 -25.42185 -24.43533 -23.91869 -23.31445 -22.39860 -21.06772 -20.90186 -19.96160 -19.43098 -18.56849 -17.75270 -16.91180 -16.53454 -16.33536 -16.12665 -15.47320 -15.21150 -15.15433 -15.09195 -14.56638 -14.38048 -14.21910 -14.05511 -13.81540 -13.56878 -13.30936 -13.12880 -12.75091 -12.71606 -12.53832 -12.33254 -12.22537 -12.21221 -12.12264 -11.83541 -11.49108 -11.19846 -11.04868 -10.99475 -10.64006 -10.63108 -10.37473 -10.31335 -10.14114 -10.04105 -9.77676 -9.67371 -9.45213 -9.17475 -8.85528 -8.54406 -8.35406 -6.08763 -4.11607 1.74785 2.32723 2.67962 2.86104 3.29108 3.36390 3.40592 3.46154 3.69437 3.76191 3.92792 4.08302 4.24967 4.35186 4.41289 4.44874 4.48228 4.55900 4.67118 4.73244 4.80033 4.91671 4.97913 5.03601 5.15790 5.18842 5.24800 5.26429 5.28359 5.34898 5.36389 5.43646 5.53912 5.59409 5.61035 5.79750 5.82828 5.88087 5.99959 6.06974 6.27313 6.33986 6.34283 6.73160 6.91783 7.05933 7.20726 7.52150 7.61783 7.89380 7.94879 8.02105 8.28180 8.65152 8.94600 9.53312 11.02870 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011967 B = 0.002235 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.182944 B =12523.525467 C =14129.750086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.521 4.521 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.122 3.878 11 N -0.716 5.716 12 C 0.535 3.465 13 O -0.550 6.550 14 C -0.176 4.176 15 H 0.126 0.874 16 C -0.138 4.138 17 C -0.104 4.104 18 C -0.099 4.099 19 C 0.110 3.890 20 N -0.609 5.609 21 C 0.528 3.472 22 O -0.520 6.520 23 C 0.021 3.979 24 H 0.116 0.884 25 C -0.141 4.141 26 C -0.151 4.151 27 C 0.130 3.870 28 N -0.468 5.468 29 C 0.119 3.881 30 C -0.102 4.102 31 H 0.262 0.738 32 H 0.022 0.978 33 H 0.022 0.978 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.398 0.602 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.081 0.919 45 H 0.094 0.906 46 H 0.090 0.910 47 H 0.178 0.822 48 H 0.070 0.930 49 H 0.095 0.905 50 H 0.082 0.918 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.205 -29.907 7.397 31.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.560 4.560 8 H 0.078 0.922 9 C -0.025 4.025 10 C -0.001 4.001 11 N -0.365 5.365 12 C 0.320 3.680 13 O -0.429 6.429 14 C -0.197 4.197 15 H 0.144 0.856 16 C -0.175 4.175 17 C -0.105 4.105 18 C -0.138 4.138 19 C -0.013 4.013 20 N -0.344 5.344 21 C 0.315 3.685 22 O -0.394 6.394 23 C -0.091 4.091 24 H 0.133 0.867 25 C -0.180 4.180 26 C -0.190 4.190 27 C -0.085 4.085 28 N -0.173 5.173 29 C -0.003 4.003 30 C -0.140 4.140 31 H 0.071 0.929 32 H 0.040 0.960 33 H 0.041 0.959 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.231 0.769 37 H 0.119 0.881 38 H 0.123 0.877 39 H 0.095 0.905 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.102 0.898 43 H 0.109 0.891 44 H 0.100 0.900 45 H 0.112 0.888 46 H 0.108 0.892 47 H 0.195 0.805 48 H 0.088 0.912 49 H 0.114 0.886 50 H 0.100 0.900 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.140 -28.318 7.756 30.216 hybrid contribution -0.050 0.156 -0.477 0.505 sum -7.190 -28.161 7.279 29.962 Atomic orbital electron populations 1.69965 1.06088 1.26777 1.50415 1.25005 0.94899 0.99440 0.94996 0.86458 0.80160 0.83347 0.77624 1.19584 1.20936 1.20903 1.21084 0.93258 0.90376 1.51258 0.92218 1.19320 0.94181 0.91134 0.97827 1.21730 0.96054 0.81562 1.00719 1.46300 1.10558 1.06385 1.73257 1.19544 0.87503 0.84520 0.76396 1.90672 1.13916 1.87672 1.50651 1.22412 1.04558 0.94380 0.98365 0.85606 1.23080 0.97501 0.95241 1.01696 1.21464 0.95642 1.01380 0.91988 1.21591 0.95790 0.98656 0.97721 1.21770 1.01386 0.93323 0.84818 1.48010 1.19619 1.49059 1.17727 1.20094 0.84708 0.81246 0.82493 1.90722 1.75639 1.39790 1.33290 1.22976 0.93455 0.93363 0.99354 0.86688 1.23059 0.99198 0.94365 1.01363 1.22575 0.97291 0.98392 1.00733 1.26811 0.95350 0.90513 0.95841 1.72824 1.06108 1.33990 1.04426 1.21568 0.84022 0.95216 0.99522 1.21583 1.03272 0.97309 0.91818 0.92887 0.95987 0.95945 0.92610 0.92596 0.76864 0.88109 0.87700 0.90472 0.90048 0.90701 0.89774 0.89114 0.90038 0.88811 0.89173 0.80545 0.91166 0.88634 0.89970 0.90415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.71 29.54 -169.99 -5.02 16.68 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 8 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 9 C 0.01 0.32 5.09 -27.89 -0.14 0.18 16 10 C 0.12 2.61 5.61 -4.04 -0.02 2.59 16 11 N -0.72 -12.51 5.56 -60.30 -0.33 -12.84 16 12 C 0.54 8.89 6.09 -10.99 -0.07 8.82 16 13 O -0.55 -11.26 16.61 5.56 0.09 -11.17 16 14 C -0.18 -2.04 5.90 -91.85 -0.54 -2.58 16 15 H 0.13 1.21 8.14 -51.93 -0.42 0.79 16 16 C -0.14 -1.34 9.46 -26.75 -0.25 -1.60 16 17 C -0.10 -1.01 1.94 -154.45 -0.30 -1.31 16 18 C -0.10 -0.69 5.83 -26.45 -0.15 -0.84 16 19 C 0.11 0.68 6.19 -3.67 -0.02 0.65 16 20 N -0.61 -5.96 2.92 -172.70 -0.50 -6.46 16 21 C 0.53 6.40 6.90 -10.99 -0.08 6.33 16 22 O -0.52 -8.78 15.93 5.56 0.09 -8.69 16 23 C 0.02 0.19 2.97 -68.07 -0.20 -0.01 16 24 H 0.12 0.83 6.76 -51.93 -0.35 0.48 16 25 C -0.14 -0.78 6.38 -24.88 -0.16 -0.93 16 26 C -0.15 -0.61 6.90 -26.64 -0.18 -0.79 16 27 C 0.13 0.84 12.06 -13.90 -0.17 0.67 16 28 N -0.47 -5.04 10.60 -52.32 -0.55 -5.59 16 29 C 0.12 1.29 6.44 -3.67 -0.02 1.27 16 30 C -0.10 -1.20 5.24 -26.45 -0.14 -1.34 16 31 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.40 6.17 8.47 -40.82 -0.35 5.83 16 37 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.10 1.20 7.93 -51.93 -0.41 0.79 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.40 8.10 -51.93 -0.42 -0.02 16 41 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.08 0.35 5.00 -51.93 -0.26 0.09 16 43 H 0.09 0.28 7.76 -51.93 -0.40 -0.12 16 44 H 0.08 0.55 7.90 -51.93 -0.41 0.14 16 45 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 46 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 47 H 0.18 0.62 8.06 -52.48 -0.42 0.20 16 48 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.10 1.24 6.96 -51.93 -0.36 0.88 16 50 H 0.08 1.12 7.36 -51.93 -0.38 0.74 16 51 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 411.39 15.07 6.20 6.20 Total: -1.00 -37.27 411.39 -10.55 -47.82 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -8.38 Total: 2.09 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -2.86 Total: -2.29 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: -0.66 Total: -50.64 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: 0.18 Total: -19.86 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -37.27 -10.55 -47.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271516570.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.622 kcal (2) G-P(sol) polarization free energy of solvation -37.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds