Wall clock time and date at job start Sat Apr 11 2020 08:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86795 * 119.99758 * 2 1 4 4 H 1.48502 * 109.47332 * 270.00316 * 3 2 1 5 5 H 1.48502 * 109.47330 * 30.00190 * 3 2 1 6 6 H 1.48501 * 109.47066 * 150.00022 * 3 2 1 7 7 C 1.37868 * 120.00041 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00319 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00023 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47312 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47149 * 180.02562 * 10 9 7 12 12 C 1.46948 * 124.35162 * 90.00420 * 11 10 9 13 13 C 1.53708 * 105.31438 * 196.31093 * 12 11 10 14 14 C 1.53824 * 102.61067 * 335.42904 * 13 12 11 15 15 C 1.34509 * 124.35396 * 270.00299 * 11 10 9 16 16 O 1.21278 * 124.94015 * 359.63204 * 15 11 10 17 17 C 1.52268 * 110.80937 * 217.11073 * 13 12 11 18 18 C 1.53219 * 109.34639 * 289.15139 * 17 13 12 19 19 C 1.53036 * 109.46903 * 300.11217 * 18 17 13 20 20 C 1.52773 * 109.57633 * 61.78508 * 19 18 17 21 21 N 1.45959 * 110.78707 * 93.71132 * 13 12 11 22 22 C 1.34777 * 120.65421 * 252.05085 * 21 13 12 23 23 O 1.21281 * 120.00157 * 5.12210 * 22 21 13 24 24 C 1.50703 * 120.00037 * 185.12059 * 22 21 13 25 25 H 1.08996 * 110.28937 * 317.87576 * 24 22 21 26 26 C 1.54682 * 110.32333 * 80.00413 * 24 22 21 27 27 C 1.54825 * 100.79877 * 142.85513 * 26 24 22 28 28 C 1.51263 * 103.78244 * 336.46820 * 27 26 24 29 29 N 1.27264 * 111.24302 * 15.92542 * 28 27 26 30 30 H 0.97000 * 120.00010 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.47062 * 60.00056 * 9 7 2 32 32 H 1.08998 * 109.47613 * 300.00343 * 9 7 2 33 33 H 1.09002 * 109.46855 * 60.00121 * 10 9 7 34 34 H 1.08999 * 109.47170 * 300.00224 * 10 9 7 35 35 H 1.09001 * 110.27566 * 77.34682 * 12 11 10 36 36 H 1.09009 * 110.27039 * 315.26970 * 12 11 10 37 37 H 1.09006 * 110.51407 * 142.61685 * 14 13 12 38 38 H 1.08994 * 110.51777 * 265.34112 * 14 13 12 39 39 H 1.08994 * 109.49180 * 49.11707 * 17 13 12 40 40 H 1.08996 * 109.48896 * 169.19563 * 17 13 12 41 41 H 1.08998 * 109.46947 * 60.11178 * 18 17 13 42 42 H 1.09002 * 109.46765 * 180.10687 * 18 17 13 43 43 H 1.09004 * 109.46437 * 181.92020 * 19 18 17 44 44 H 1.08997 * 109.46550 * 301.90511 * 19 18 17 45 45 H 1.08997 * 109.53887 * 185.15059 * 20 19 18 46 46 H 1.08995 * 109.45068 * 64.79099 * 20 19 18 47 47 H 1.08997 * 111.15592 * 24.96906 * 26 24 22 48 48 H 1.09005 * 111.18905 * 260.75464 * 26 24 22 49 49 H 1.08997 * 110.56615 * 95.04447 * 27 26 24 50 50 H 1.09008 * 110.56438 * 217.89925 * 27 26 24 51 51 H 1.08000 * 124.37496 * 195.89288 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 7 5.4866 -2.6364 -0.0009 12 6 6.3158 -2.6364 1.2123 13 6 7.7195 -2.2200 0.7446 14 6 7.7137 -2.6268 -0.7388 15 6 6.2457 -2.6364 -1.1114 16 8 5.8170 -2.6428 -2.2458 17 6 8.7929 -2.9818 1.5102 18 6 8.8378 -2.4793 2.9569 19 6 9.1625 -0.9838 2.9676 20 6 8.0627 -0.2160 2.2362 21 7 7.9064 -0.7793 0.8858 22 6 7.9408 0.0188 -0.1998 23 8 7.7236 -0.4438 -1.2996 24 6 8.2492 1.4860 -0.0469 25 1 7.7254 1.8943 0.8174 26 6 9.7740 1.7022 0.0977 27 6 9.9572 3.0178 -0.6978 28 6 8.7688 3.0416 -1.6334 29 7 7.8744 2.2150 -1.2639 30 1 -0.4850 0.8400 0.0004 31 1 3.8753 -0.6803 0.8889 32 1 3.8746 -0.6799 -0.8911 33 1 3.6580 -3.1505 -0.8908 34 1 3.6586 -3.1501 0.8892 35 1 6.3440 -3.6340 1.6505 36 1 5.9291 -1.9167 1.9340 37 1 8.2551 -1.8945 -1.3379 38 1 8.1462 -3.6194 -0.8644 39 1 8.5591 -4.0464 1.5020 40 1 9.7616 -2.8182 1.0381 41 1 7.8693 -2.6442 3.4290 42 1 9.6069 -3.0222 3.5063 43 1 9.2280 -0.6337 3.9977 44 1 10.1151 -0.8154 2.4654 45 1 8.3386 0.8360 2.1641 46 1 7.1256 -0.3141 2.7842 47 1 10.3323 0.8852 -0.3594 48 1 10.0563 1.8318 1.1426 49 1 9.9340 3.8769 -0.0275 50 1 10.8890 2.9969 -1.2631 51 1 8.6894 3.6781 -2.5023 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271517143.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:25:09 Heat of formation + Delta-G solvation = -38.257457 kcal Electronic energy + Delta-G solvation = -33350.465266 eV Core-core repulsion = 29249.959518 eV Total energy + Delta-G solvation = -4100.505748 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.78620 -40.88733 -39.55199 -38.54209 -37.07214 -35.70972 -34.36874 -33.89203 -31.91594 -31.36535 -30.12323 -29.35071 -28.12090 -26.64070 -25.08956 -23.94402 -23.12409 -22.64243 -22.07349 -20.82846 -20.21489 -19.41481 -19.13880 -18.52346 -17.74139 -17.36465 -16.93402 -16.76400 -16.38734 -16.12040 -15.99994 -15.62995 -15.30941 -15.14659 -15.01252 -14.85994 -14.72425 -14.63343 -14.13615 -14.05938 -13.90458 -13.77505 -13.52230 -13.28334 -13.12551 -13.08511 -12.95911 -12.73686 -12.59147 -12.44176 -12.23193 -12.10360 -11.91644 -11.88143 -11.63245 -11.56378 -11.48949 -10.98088 -10.92061 -10.72592 -10.52492 -9.92773 -9.82784 -9.49003 -8.43547 -6.47471 1.16769 1.19482 1.23710 1.32743 1.34144 1.74423 1.88166 2.13484 2.21461 2.90806 3.13280 3.25167 3.40280 3.44608 3.59712 3.67454 3.82571 3.95090 3.98843 4.02272 4.12220 4.21668 4.25333 4.30372 4.32937 4.39734 4.50580 4.52677 4.55983 4.57092 4.67536 4.71270 4.81407 4.91731 4.96334 4.98166 5.03883 5.04629 5.06884 5.11603 5.16656 5.24543 5.29227 5.38297 5.39335 5.52190 5.64606 5.71978 6.11194 6.25315 6.27124 6.57398 6.72616 7.12434 7.16825 7.26098 8.72746 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008845 B = 0.004935 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3164.965171 B = 5672.897838 C = 7142.684153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.020 3.980 3 Si 0.944 3.056 4 H -0.288 1.288 5 H -0.263 1.263 6 H -0.260 1.260 7 C -0.532 4.532 8 H 0.046 0.954 9 C -0.004 4.004 10 C 0.148 3.852 11 N -0.624 5.624 12 C 0.089 3.911 13 C 0.171 3.829 14 C -0.182 4.182 15 C 0.515 3.485 16 O -0.596 6.596 17 C -0.104 4.104 18 C -0.121 4.121 19 C -0.124 4.124 20 C 0.092 3.908 21 N -0.594 5.594 22 C 0.515 3.485 23 O -0.549 6.549 24 C 0.018 3.982 25 H 0.116 0.884 26 C -0.126 4.126 27 C -0.141 4.141 28 C 0.140 3.860 29 N -0.548 5.548 30 H 0.270 0.730 31 H 0.021 0.979 32 H -0.022 1.022 33 H 0.047 0.953 34 H 0.095 0.905 35 H 0.112 0.888 36 H 0.080 0.920 37 H 0.152 0.848 38 H 0.115 0.885 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.069 0.931 42 H 0.093 0.907 43 H 0.102 0.898 44 H 0.077 0.923 45 H 0.101 0.899 46 H 0.069 0.931 47 H 0.072 0.928 48 H 0.123 0.877 49 H 0.118 0.882 50 H 0.112 0.888 51 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.803 2.987 13.257 35.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.178 4.178 3 Si 0.768 3.232 4 H -0.214 1.214 5 H -0.187 1.187 6 H -0.184 1.184 7 C -0.571 4.571 8 H 0.064 0.936 9 C -0.042 4.042 10 C 0.026 3.974 11 N -0.357 5.357 12 C -0.034 4.034 13 C 0.085 3.915 14 C -0.221 4.221 15 C 0.305 3.695 16 O -0.477 6.477 17 C -0.142 4.142 18 C -0.158 4.158 19 C -0.162 4.162 20 C -0.029 4.029 21 N -0.327 5.327 22 C 0.304 3.696 23 O -0.428 6.428 24 C -0.094 4.094 25 H 0.133 0.867 26 C -0.165 4.165 27 C -0.180 4.180 28 C -0.073 4.073 29 N -0.256 5.256 30 H 0.079 0.921 31 H 0.039 0.961 32 H -0.003 1.003 33 H 0.065 0.935 34 H 0.113 0.887 35 H 0.130 0.870 36 H 0.098 0.902 37 H 0.168 0.832 38 H 0.133 0.867 39 H 0.115 0.885 40 H 0.101 0.899 41 H 0.087 0.913 42 H 0.112 0.888 43 H 0.120 0.880 44 H 0.096 0.904 45 H 0.119 0.881 46 H 0.087 0.913 47 H 0.091 0.909 48 H 0.142 0.858 49 H 0.136 0.864 50 H 0.130 0.870 51 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 31.252 2.390 12.002 33.563 hybrid contribution -0.417 0.836 -0.448 1.036 sum 30.835 3.226 11.554 33.087 Atomic orbital electron populations 1.70014 1.07614 1.28291 1.51816 1.25757 0.95550 1.02618 0.93893 0.85778 0.79258 0.79715 0.78406 1.21395 1.18730 1.18422 1.21241 0.90825 0.93864 1.51137 0.93565 1.19620 0.94797 0.94900 0.94880 1.21134 0.77347 0.97113 1.01794 1.48645 1.06223 1.72818 1.08013 1.22800 0.90045 1.03712 0.86795 1.20867 0.95046 0.81003 0.94549 1.23567 0.93686 1.06388 0.98435 1.21586 0.90816 0.73274 0.83818 1.90605 1.80045 1.53125 1.23943 1.21740 0.96690 0.99732 0.96060 1.21612 1.03463 0.95949 0.94770 1.21812 0.97589 0.95119 1.01653 1.22167 1.00806 0.99437 0.80523 1.47823 1.71365 1.06202 1.07271 1.20877 0.75743 0.88978 0.83964 1.90518 1.49677 1.73951 1.28684 1.23061 0.99241 0.91376 0.95772 0.86674 1.23066 0.90644 0.98625 1.04147 1.22625 0.99225 0.98271 0.97889 1.27418 0.90675 0.92014 0.97205 1.72897 1.32832 1.08733 1.11142 0.92053 0.96109 1.00313 0.93487 0.88651 0.87026 0.90216 0.83159 0.86718 0.88502 0.89867 0.91271 0.88809 0.87995 0.90386 0.88134 0.91259 0.90918 0.85845 0.86390 0.87011 0.78890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.45 13.96 21.45 0.30 -61.15 16 2 C 0.02 1.28 5.47 84.65 0.46 1.75 16 3 Si 0.94 50.08 27.47 68.60 1.88 51.96 16 4 H -0.29 -15.79 7.11 99.48 0.71 -15.09 16 5 H -0.26 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.26 -13.24 6.54 99.48 0.65 -12.59 16 7 C -0.53 -33.60 9.66 25.60 0.25 -33.36 16 8 H 0.05 3.09 7.99 -2.91 -0.02 3.07 16 9 C 0.00 -0.20 4.37 29.85 0.13 -0.07 16 10 C 0.15 6.95 5.88 86.38 0.51 7.46 16 11 N -0.62 -25.01 2.94 -818.66 -2.41 -27.42 16 12 C 0.09 2.36 5.92 86.53 0.51 2.87 16 13 C 0.17 3.83 0.87 3.98 0.00 3.83 16 14 C -0.18 -5.71 5.38 30.37 0.16 -5.55 16 15 C 0.51 22.90 6.82 87.94 0.60 23.50 16 16 O -0.60 -33.67 17.59 -3.02 -0.05 -33.72 16 17 C -0.10 -1.20 4.69 30.43 0.14 -1.06 16 18 C -0.12 -0.83 5.79 30.68 0.18 -0.65 16 19 C -0.12 -0.75 6.04 30.53 0.18 -0.57 16 20 C 0.09 1.21 5.96 86.18 0.51 1.72 16 21 N -0.59 -13.35 2.70 -773.32 -2.08 -15.44 16 22 C 0.51 15.66 6.74 87.66 0.59 16.25 16 23 O -0.55 -22.75 11.37 -3.03 -0.03 -22.78 16 24 C 0.02 0.43 2.97 44.77 0.13 0.57 16 25 H 0.12 2.50 6.77 -2.39 -0.02 2.48 16 26 C -0.13 -1.56 6.47 31.79 0.21 -1.35 16 27 C -0.14 -1.35 6.90 30.65 0.21 -1.14 16 28 C 0.14 2.58 12.06 88.95 1.07 3.65 16 29 N -0.55 -16.54 10.60 -317.96 -3.37 -19.91 16 30 H 0.27 16.41 8.31 -92.71 -0.77 15.64 16 31 H 0.02 1.10 7.20 -2.39 -0.02 1.08 16 32 H -0.02 -1.36 7.57 -2.39 -0.02 -1.38 16 33 H 0.05 2.44 7.93 -2.39 -0.02 2.42 16 34 H 0.10 3.91 8.14 -2.39 -0.02 3.89 16 35 H 0.11 2.16 7.73 -2.39 -0.02 2.14 16 36 H 0.08 2.10 7.14 -2.38 -0.02 2.08 16 37 H 0.15 5.50 4.51 -93.38 -0.42 5.08 16 38 H 0.11 2.87 7.87 -2.39 -0.02 2.85 16 39 H 0.10 0.89 7.94 -2.39 -0.02 0.87 16 40 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.07 0.54 7.65 -2.39 -0.02 0.52 16 42 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 43 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 44 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 45 H 0.10 1.00 5.08 -2.39 -0.01 0.99 16 46 H 0.07 1.02 7.43 -2.39 -0.02 1.01 16 47 H 0.07 1.04 7.90 -2.39 -0.02 1.02 16 48 H 0.12 0.65 7.74 -2.38 -0.02 0.63 16 49 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 50 H 0.11 0.64 8.14 -2.38 -0.02 0.62 16 51 H 0.19 2.48 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -101.13 391.16 0.56 -100.58 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: 0.46 Total: 10.03 kcal Atomic # 6 Polarization: 11.99 SS G_CDS: 5.86 Total: 17.85 kcal Atomic # 7 Polarization: -116.35 SS G_CDS: -7.56 Total: -123.91 kcal Atomic # 8 Polarization: -56.42 SS G_CDS: -0.09 Total: -56.51 kcal Atomic # 14 Polarization: 50.08 SS G_CDS: 1.88 Total: 51.96 kcal Total: -101.13 0.56 -100.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271517143.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.318 kcal (2) G-P(sol) polarization free energy of solvation -101.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds